|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13691#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1348 fasta sequence
[CGCGAGCTTCACCTGAATCCGATCCGATCACCCTTAGCAACCCAGATGTTCCTCACCGACAAGTACCACGCGCTTCTCCCTTTCCACGCCAGCGGCGGCGGCGTGAAGGATCACCGGCGGAGGCCGGGCAAGGCGGTGCCCGGGGCGGCGGGTGGTGGTCCCGGGTCCGCCCGGTTCGGCGCCGCGCTGTCCGCGAGGCTCGGGAGTTTGCTGCCGCTGCCGGCGTCGCCGTTGGCTGCGTTGGCGCGGCTCGCGGATCTCCTCGCGCTTGCCCTCGCTGACGCTGTTCCCGCGTTGGCTGGTGAGGGGGACGCGGCCGCCGTCGCCGCGCACCTCGACGCCGGGGTCGCGCTGCTCGACGCCTGCAACGGGATCACCGCGCGCCTCGACCGGCTCCGCCGCCGCCGCCTGCTGTCCCGGTTCGCGCTCCACCTCCTCTCGTCGTCGTCACCACCGCTGCCTTCCTCGGTCCGCCGCGCGCGCGCCGCGCTCGCCGACCGTGACGAGCGGGCCCCGGCGTCGCCTCCCCCGCCGCTCCCTTCTCTCCCGTTCGACCAGCCCCGCGACCGCGTCTCCGGCGCCGCGACCGTCCTCCTCGCCGTCGACGCCGTCTCCTCGCTCGCAGCGGCGGCCGCGTCCGCCGTCCTCTGCGGCGACGCCCTCCACCAGATCGCCTTCCCCCTGGTCTCCGGCGAATTCCCGTGGACCGAGGCCTTCAACGCCGTGTCCATCCAGCTCGCCGCCCTCGCCACCAAACCCAGCGAGGTGGACGCCGTCGACGAGGCCGTCGGCAAGCTCAAATCCGTGCTCGACAACGGCGACGGCGACCTCGACGAGGCGGCGCTGCGGGCGGCGGTGCAGGAGGTGGAGAGGCGGACGGAGGAGCTGACGGCGCCGTTGGACCGGCTGTCCGACGCCGTCAACGGCGTGTTCCGGGCGGCGCTGTGCCTCCGCAACGCGGAGCTCGGGAGCATCATGGTGGGACCCGCCGAAAAGACGCCGTGTAAATAGCCGTTTCCACCGTGTGTCGTCCGTAGCCATACTGGTATGTCACTGTATAAATACAAGTATAATTCTGGAAGTAGTACAGTTCTACAGGTACAGGGCAACATGGGGTGGTGTCTCAGCCAAATGCAGTGGTTTGGTGCTTTTTCTACCAGCTGTTACTACTATCTGTGTGTCAAGGTTGCCACATATGAGAACACAGTGCAATTCGCACCCTTTTGCAGATGTGGAATCCAGTAAAAACTTGGGAAAACCGTGGCAACTGTTCACCTACCTATGTAATTTTGCGGCTTCATACATACTGTATGTATACCATGAGGAACTTTGTGAAGAAAATCTCTCT]
[+] EMBL AK071276 [CGCGAGCTTCACCTGAATCCGATCCGATCACCCTTAGCAACCCAGATGTTCCTCACCGACAAGTACCACGCGCTTCTCCCTTTCCACGCCAGCGGCGGCGGCGTGAAGGATCACCGGCGGAGGCCGGGCAAGGCGGTGCCCGGGGCGGCGGGTGGTGGTCCCGGGTCCGCCCGGTTCGGCGCCGCGCTGTCCGCGAGGCTCGGGAGTTTGCTGCCGCTGCCGGCGTCGCCGTTGGCTGCGTTGGCGCGGCTCGCGGATCTCCTCGCGCTTGCCCTCGCTGACGCTGTTCCCGCGTTGGCTGGTGAGGGGGACGCGGCCGCCGTCGCCGCGCACCTCGACGCCGGGGTCGCGCTGCTCGACGCCTGCAACGGGATCACCGCGCGCCTCGACCGGCTCCGCCGCCGCCGCCTGCTGTCCCGGTTCGCGCTCCACCTCCTCTCGTCGTCGTCACCACCGCTGCCTTCCTCGGTCCGCCGCGCGCGCGCCGCGCTCGCCGACCGTGACGAGCGGGCCCCGGCGTCGCCTCCCCCGCCGCTCCCTTCTCTCCCGTTCGACCAGCCCCGCGACCGCGTCTCCGGCGCCGCGACCGTCCTCCTCGCCGTCGACGCCGTCTCCTCGCTCGCAGCGGCGGCCGCGTCCGCCGTCCTCTGCGGCGACGCCCTCCACCAGATTGCCTTCCCCCTGGTCTCCGGCGAATTCCCGTGGACCGAGGCCTTCAACGCCGTGTCCATCCAGCTCGCCGCCCTCGCCACCAAACCCAGCGAGGTGGACGCCGTCGACGAGGCCGTCGGCAAGCTCAAATCCGTGCTCGACAACGGCGACGGCGACCTCGACGAGGCGGCGCTGCGGGCGGCGGTGCAGGAGGTGGAGAGGCGGACGGAGGAGCTGACGGCGCCGTTGGACCGGCTGTCCGACGCCGTCAACGGCGTGTTCCGGGCGGCGCTGTGCCTCCGCAACGCGGAGCTCGGGAGCATCATGGTGGGACCCGCCGAAAAGACGCCGTGTAAATAGCCGTTTCCACCGTGTGTCGTCCGTAGCCATACTGGTATGTCACTGTATAAATACAAGTATAATTCTGGAAGTAGTACAGTTCTACAGGTACAGGGCAACATGGGGTGGTGTCTCAGCCAAATGCAGTGGTTTGGTGCTTTTTCTACCAGCTGTTACTACTATCTGTGTGTCAAGGTTGCCACATATGAGAACACAGTGCAATTCGCACCCTTTTGCAGATGTGGAATCCAGTAAAAACTTGGGAAAACCGTGGCAACTGTTCACCTACCTATGTAATTTTGCGGCTTCATACATACTGTATGTATACCATGAGGAACTTTGTGAAGAAAATCTCT ]
[+] EMBL AK119671 [ GCGAGCTTCACCTGAATCCGATCCGATCACCCTTAGCAACCCAGATGTTCCTCACCGACAAGTACCACGCGCTTCTCCCTTTCCACGCCAGCGGCGGCGGCGTGAAGGATCACCGGCGGAGGCCGGGCAAGGCGGTGCCCGGGGCGGCGGGTGGTGGTCCCGGGTCCGCCCGGTTCGGCGCCGCGCTGTCCGCGAGGCTCGGGAGTTTGCTGCCGCTGCCGGCGTCGCCGTTGGCTGCGTTGGCGCGGCTCGCGGATCTCCTCGCGCTTGCCCTCGCTGGCGCTGTTCCCGCGTTGGCTGGTGAGGGGGACGCGGCCGCCGTCGCCGCGCACCTCGACGCCGGGGTCGCGCTGCTCGACGCCTGCAACGGGATCACCGCGCGCCTCGACCGGCTCCGCCGCCGCCGCCTGCTGTCCCGGTTCGCGCTCCACCTCCTCTCGTCGTCGTCACCACCGCTGCCTTCCTCGGTCCGCCGCGCGCGCGCCGCGCTCGCCGACCGTGACGAGCGGGCCCCGGCGTCGCCTCCCCCGCCGCTCCCTTCTCTCCCGTTCGACCAGCCCCGCGACCGCGTCTCCGGCGCCGCGACCGTCCTCCTCGCCGTCGACGCCGTCTCCTCGCTCGCAGCGGCGGCCGCGTCCGCCGTCCTCTGCGGCGACGCCCTCCACCAGATCGCCTTCCCCCTGGTCTCCGGCGAATTCCCGTGGACCGAGGCCTTCAACGCCGTGTCCATCCAGCTCGCCGCCCTCGCCACCAAACCCAGCGAGGTGGACGCCGTCGACGAGGCCGTCGGCAAGCTCAAATCCGTGCTCGACAACGGCGACGGCGACCTCGACGAGGCGGCGCTGCGGGCGGCGGTGCAGGAGGTGGAGAGGCGGACGGAGGAGCTGACGGCGCCGTTGGACCGGCTGTCCGACGCCGTCAACGGCGTGTTCCGGGCGGCGCTGTGCCTCCGCAACGCGGAGCTCGGGAGCATCATGGTGGGACCCGCCGAAAAGACGCCGTGTAAATAGCCGTTTCCACCGTGTGTCGTCCGTAGCCATACTGGTATGTCACTGTATAAATACAAGTATAATTCTGGAAGTAGTACAGTTCTACAGGTACAGGGCAACATGGGGTGGTGTCTCAGCCAAATGCAGTGGTTTGGTGCTTTTTCTACCAGCTGTTACTACTATCTGTGTGTCAAGGTTGCCACATATGAGAACACAGTGCAATTCGCACCCTTTTGCAGATGTGGAATCCAGTAAAAACTTGGGAAAACCGTGGCAACTGTTCACCTACCTATGTAATTTTGCGGCTTCATACATACTGTATGTATACCATGAGGAACTTTGTGAAGAAAATCTCTCT]
[+] EMBL CB657783 [ GGCGGGTGGTGGTCCCGGGTCCGCCCGGTTCGGCGCCGCGCTGTCCGCGAGGCTCGGGAGTTTGCTGCCGCTGCCGGCGTCGCCGTTGGCTGCGTTGGCGCGGCTCGCGGATCTCCTCGCGCTTGCCCTCGCTGACGCTGTTCCCGCGTTGGCTGGTGAGGGGGACGCGGCCGCCGTCGCCGCGCACCTCGACGCCGGGGTCGCGCTGCTCGACGCCTGCAACGGGATCACCGCGCGCCTCGACCGGCTCCGCCGCCGCCGCCTGCTGTCCCGGTTCGCGCTCCACCTCCTCTCGTCGTCGTCACCACCGCTGCCTTCCTCGGTCCGCCGCGCGCGCGCCGCGCTCTCCGACCGTGACGAGCGGGCCCCGGCGTCGCCTCCCCCGCCGCTCCCTTCTCTCCCGTTCGACCAGCCCCGCGACCGCGTCTCCGGCGCCGCGACCGTCCTCCTCGCCGTCGACGCCGTCTCCTCGCTCGCAGCGGCGGCCGCGTCCGCCGTCCTCTGCGGCGACGCCCTCCACCAGATCCCCTTCCCCCTGGTCTCCGGCGAATTCCCGTGGACCGAGGCCTTCAACGCCGTGTCCATCCAGCTC ]
[+] EMBL CB667396 [ GCGCCGCGCTGTCCGCGAGGCTCGGGAGTTTGCTGCCGCTGCCGGCGTCGCCGTTGGCTGCGTTGGCGCGGCTCGCGGATCTCCTCGCGCTTGCCCTCGCTGACGCTGTTCCCGCGTTGGCTGGTGAGGGGGACGCGGCCGCCGTCGCCGCGCACCTCGACGCCGGGGTCGCGCTGCTCGACGCCTGCAACGGGATCACCGCGCGCCTCGACCGGCTCCGCCGCCGCCGCCTGCTGTCCCGGTTCGCGCTCCACCTCCTCTCGTCGTCGTCACCACCGCTGCCTTCCTCAGTCCGCCGCGCGCGCGCCGCGCTCGCCGACCGTGACGAGCGGGCCCCGGCGTCCCCTCCCCCGCCGCTCCCTTCTCTCCCGTTCGACCAGCCCCGCGACCGCGTCTCCGGCGCCGCGACCGTGCTCCTCGCCGTCCACGGCGTCTCCTCGCTCGTAGTGGCGGCCGCGTCCGCCGT ]
consensusID : consensus_13691#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1227 fasta sequence
[TTCCTCGAGCACTGTTGGCCTACTGGGTCTCCGCCGCGAGCTTCACCTGAATCCGATCCGATCACCCTTAGCAACCCAGATGTTCCTCACCGACAAGTACCACGCGCTTCTCCCTTTCCACGCCAGCGGCGGCGGCGTGAAGGATCACCGGCGGAGGCCGGGCAAGGCGGTGCCCGGGGCGGCGGGTGGTGGTCCCGGGTCCGCCCGGTTCGGCGCCGCGCTGTCCGCGAGGCTCGGGAGTTTGCTGCCGCTGCCGGCGTCGCCGTTGGCTGCGTTGGCGCGGCTCGCGGATCTCCTCGCGCTTGCCCTCGCTGACGCTGTTCCCGCGTTGGCTGGTGAGGGGGACGCGGCCGCCGTCGCCTCCCCCGCCGCTCCCTTCTCTCCCGTTCGACCAGCCCCGCGACCGCGTCTCCGGCGCCGCGACCGTCCTCCTCGCCGTCGACGCCGTCTCCTCGCTCGCAGCGGCGGCCGCGTCCGCCGTCCTCTGCGGCGACGCCCTCCACCAGATCGCCTTCCCCCTGGTCTCCGGCGAATTCCCGTGGACCGAGGCCTTCAACGCCGTGTCCATCCAGCTCGCCGCCCTCGCCACCAAACCCAGCGAGGTGGACGCCGTCGACGAGGCCGTCGGCAAGCTCAAATCCGTGCTCGACAACGGCGACGGCGACCTCGACGAGGCGGCGCTGCGGGCGGCGGTGCAGGAGGTGGAGAGGCGGACGGAGGAGCTGACGGCGCCGTTGGACCGGCTGTC-CGACGCCGTCAACGGCGTGTTCCGGGCGGCGCTGTGCCTCCGCAACGCGGAGCTCGGGAGCATCATGGTGGGACCCGCCGAAAAGACGCCGTGTAAATAGCCGTTTCCACCGTGTGTCGTCCGTAGCCATACTGGTATGTCACTGTATAAATACAAGTATAATTCTGGAAGTAGTACAGTTCTACAGGTACAGGGCAACATGGGGTGGTGTCTCAGCCAAATGCAGTGGTTTGGTGCTTTTTCTACCAGCTGTTACTACTATCTGTGTGTCAAGGTTGCCACATATGAGAACACAGTGCAATTCGCACCCTTTTGCAGATGTGGAATCCAGTAAAAACTTGGGAAAACCGTGGCAACTGTTCACCTACCTATGTAATTTTGCGGCTTCATACATACTGTATGTATACCATGAGGAACTTTG-GAAAAAAAAGAAAAAAAAAGGCCACATGTGCTCGAGCTGCAGGTCGCGGCCGCTAGAC]
[+] EMBL AK109377 [TTCCTCGAGCACTGTTGGCCTACTGGGTCTCCGCCGCGAGCTTCACCTGAATCCGATCCGATCACCCTTAGCAACCCAGATGTTCCTCACCGACAAGTACCACGCGCTTCTCCCTTTCCACGCCAGCGGCGGCGGCGTGAAGGATCACCGGCGGAGGCCGGGCAAGGCGGTGCCCGGGGCGGCGGGTGGTGGTCCCGGGTCCGCCCGGTTCGGCGCCGCGCTGTCCGCGAGGCTCGGGAGTTTGCTGCCGCTGCCGGCGTCGCCGTTGGCTGCGTTGGCGCGGCTCGCGGATCTCCTCGCGCTTGCCCTCGCTGACGCTGTTCCCGCGTTGGCTGGTGAGGGGGACGCGGCCGCCGTCGCCTCCCCCGCCGCTCCCTTCTCTCCCGTTCGACCAGCCCCGCGACCGCGTCTCCGGCGCCGCGACCGTCCTCCTCGCCGTCGACGCCGTCTCCTCGCTCGCAGCGGCGGCCGCGTCCGCCGTCCTCTGCGGCGACACCCTCCACCAGATCGCCTTCCCCCTGGTCTCCGGCGAATTCCCGTGGACCGAGGCCTTCAACGCCGTGTCCATCCAGCTCGCCGCCCTCGCCACCAAACCCAGCGAGGTGGACGCCGTCGACGAGGCCGTCGGCAAGCTCAAATCCGTGCTCGACAACGGCGACGGCGACCTCGACGAGGCGGCGCTGCGGGCGGCGGTGCAGGAGGTGGAGAGGCGGACGGAGGAGCTGACGGCGCCGTTGGACCGGCTGTC CGACGCCGTCAACGGCGTGTTCCGGGCGGCGCTGTGCCTCCGCAACGCGGAGCTCGGGAGCATCATGGTGGGACCCGCCGAAAAGACGCCGTGTAAATAGCCGTTTCCACCGTGTGTCGTCCGTAGCCATACTGGTATGTCACTGTATAAATACAAGTATAATTCTGGAAGTAGTACAGTTCTACAGGTACAGGGCAACATGGGGTGGTGTCTCAGCCAAATGCAGTGGTTTGGTGCTTTTTCTACCAGCTGTTACTACTATCTGTGTGTCAAGGTTGCCACATATGAGAACACAGTGCAATTCGCACCCTTTTGCAGATGTGGAATCCAGTAAAAACTTGGGAAAACCGTGGCAACTGTTCACCTACCTATGTAATTTTGCGGCTTCATACATACTGTATGTATACCATGAGGAACTTTGTGAAAAAAAAAAAAAAAAAAGGCCACATGTGCTCGAGCTGCAGGTCGCGGCCGCTAGAC]
[-] EMBL CB671364 [ CGCGTCCGCCGTCCTCTGCGGCGACGCCCTCCACCAGATCGCCTTCCCCCTGGTCTCCGGCGAATTCCCGTGGACCGAGGCCTTCAACGCCGTGTCCATCCAGCTCGCCGCCCTCGCCACCAAACCCAGCGAGGTGGACGCCGTCGACGAGGCCGTCGGCAAGCTCAAATCCGTGCTCGACAACGGCGACGGCGACCTCGACGAGGCGGCGCTGCGGGCGGCGGTGCAGGAGGTGGAGAGGCGGACGGAGGAGCTGACGGCGCCGTTGGACCGGCTGTC CGACGCCGTCAACGGCGTGTTCCGGGCGGCGCTGTGCCTCCGCAACGCGGAGCTCGGGAGCATCATGGTGGGACCCGCCGAAAAGACGCCGTGTAAATAGCCGTTTCCACCGTGTGTCGTCCGTAGCCATACTGGTATGTCACTGTATAAATACAAGTATAATTTTGGAAGTAGTACAGTTCTACAGGTACAGGGCAACATGGGGTGGTGTCTCAGCCAAATGCAGTGGTTTGGTGCTTTTTCTACCAGCTGTTACTACTATCTGTGTGTCAAGGTTGCCACATATGAGAACACAGTGCAATTCGCACCCTTTTGCAGATGTGGAATCCA ]
[-] EMBL CB658584 [ CGCCGTCCTCTGCGGCGACGCCCTCCACCAGATCGCCTTCCCCCTGGTCTCCGGCGAATTCCCGTGGACCGAGGCCTTCAACGCCGTGTCCATCCAGCTCGCCGCCCTCGCCACCAAACCCAGCGAGGTGGACGCCGTCGACGAGGCCGTCGGCAAGCTCAAATCCGTGCTCGACAACGGCGACGGCGACCTCGACGAGGCGGCGCTGCGGGCGGCGGTGCAGGAGGTGGAGAGGCGGACGGAGGAGCTGACGGCGCCGTTGGACCGGCTGTC CGACGCCGTCAACGGCGTGTTCCGGGCGGCGCTGTGCCTCCGCAACGCGGAGCTCGGGAGCATCATGGTGGGACCCGCCGAAAAGACGCCGTGTAAATAGCCGTTTCCACCGTGTGTCGTCCGTAGCCATACTGGTATGTCACTGTATAAATACAAGTATAATTCTGGAAGTAGTACAGTTCTACAGGTACAGGGCAACATGGGGTGGTGTCTCAGCCAAATGCAGTGGTTTGGTGCTTTTTCTACCAGCTGTTACTACTATCTGTGTGTCAAGGTTGCCACATATGAGAACACAGTGCAATTCGCACCCTTTTGCAGATGTGGAATCCAGTAAAAACTTGGGAAAACCGTGGCAACTGTTCACCTACCTATGTAATTTTGCGGCTTCATACATACTGTATGTATACCATGAGGAACTTTG GA ]
[-] EMBL CB667397 [ CCGTCCTCTGCGGCGACGCCCTCCACCAGATCGCCTTCCCCCTGGTCTCCGGCGAATTCCCGTGGACCGAGGCCTTCAACGCCGTGTCCATCCAGCTCGCCGCCCTCGCCACCAAACCCAGCGAGGTGGACGCCGTCGACGAGGCCGTCGGCAAGCTCAAATCCGTGCTCGACAACGGCGACGGCGACCTCGACGAGGCGGCGCTGCGGGCGGCGGTGCAGGAGGTGGAGAGGCGGACGGAGGAGCTGACGGCGCCGTTGGACCGGCTGTC CGACGCCGTCAACGGCGTGTTCCGGGCGGCGCTGTGCCTCCGCAACGCGGAGCTCGGGAGCATCATGGTGGGACCCGCCGAAAAGACGCCGTGTAAATAGCCGTTTCCACCGTGTGTCGTCCGTAGCCATACTGGTATGTCACTGTATAAATACAAGTATAATTCTGGAAGTAGTACAGTTCTACAGGTACAGGGCAACATGGGGTGGTGTCTCAGCCAAATGCAGTGGTTTGGTGCTTTTTCTACCAGCTGTTACTACTATCTGTGTGTCAAGGTTGCCACATATGAGAACACAGTGCAATTCGCACCCTTTTGCAGATGTGGAATCCAGTAAAAACTTGGGAAAACCGTGGCAACTGTTCACCTACCTATGTAATTTTGCGGCTTCATGCATACTGTATGTATACCATGAGGAACTTTG GAAAAAAAAGA ]
[-] EMBL CB666444 [ CAGATCGCCTTCCCCCTGGTCTCCGGCGAATTCCCGTGGACCGAGGCCTTCAACGCCGTGTCCATCCAGCTCGCCGCCCTCGCCACCAAACCCAGCGAGGTGGACGCCGTCGACGAGGCCGTCGGCAAGCTCAAATCCGTGCTCGACAACGGCGACGGCGACCTCGACGAGGCGGCGCTGCGGGCGGCGGTGCAGGAGGTGGAGAGGCGGACGGAGGAGCTGACGGCGCCGTTGGACCGGCTGTC CGACGCCGTCAACGGCGTGTTCCGGGCGGCGCTGTGCCTCCGCAACGCGGAGCTCGGGAGCATCATGGTGGGACCCGCCGAAAAGACGCCGTGTAAATAGCCGTTTCCACCGTGTGTCGTCCGTAGCCATACTGGTATGTCACTGTATAAATACAAGTATAATTCTGGAAGTAGTACAGTTCTACAGGTACAGGGCAACATGGGGTGGTGTCTCAGCCAAATGCAGTGGTTTGGTGCTTTTTTTACCAGCTGTTACTACTATCTGTGTGTCAAGGTTGCCACATATGAGAACACAGTGCAATTCGCACCCTTTTGCAGATGTGGAATCCAGTAAAAACTTGGGAAAACCGTGGCAACTGTTCACCTACCTATGTAATTTTGCGGCTTAAGACATACTGTATGTATACCATGAGGAACTTTG GAATAAAAAGA ]
[-] EMBL CB657784 [ CTTCCCCCTGGTCTCCGGCGAATTCCCGTGGACCGAGGCCTTCAACGCCGTGTCCATCCAGCTCGCCGCCCTCGCCACCAAACCCAGCGAGGTGGACGCCGTCGACGAGGCCGTCGGCAAGCTCAAATCCGTGCTCGACAACGGCGACGGCGACCTCGACGAGGCGGCGCTGCGGGCGGCGGTGCAGGAGGTGGAGAGGCGGACGGAGGAGCTGACGGCGCCGTTGGACCGGCTGTC CGACGCCGTCAACGGCGTGTTCCGGGCGGCGCTGTGCCTCCGCAACGCGGAGCTCGGGAGCATCATGGTGGGACCCGCCGAAAAGACGCCGTGTAAATAGCCGTTTCCACCGTGTGTCGTCCGTAGCCATACTGGTATGTCACTGTATAAATACAAGTATAATTCTGGAAGTAGTACAGTTCTACAGGTACAGGGCAACATGGGGTGGTGTCTCAGCCAAATGCAGTGGTTTGGTGCTTTTTCTACCAGCTGTTACTACTATCTGTGTGTCAAGGTTGCCACATATGAGAACACAGTGCAATTCGCACCCTTTTGGAGATGTGGAATCCA ]
[+] EMBL BU667288 [ CCGGCGAATTCCCGTGGACCGAGGCCTTCAACGCCGTGTCCATCCAGCTCGCCGCCCTCGCCACCAAACCCAGCGAGGTGGACGCCGTCGACGAGGCCGTCGGCAAGCTCAAATCCGTGCTCGACAACGGCGACGG GACCTCGAC ]
[-] EMBL CB671363 [ CTCGCCGCCCTCGCCACCAAACTCAGCGAGGTGGACGCCGTCGACGAGGCCGTCGGCAAGCTCAAATCCGTGCTCGACAACGGCGACGGCGACCTCGACGAGGCGGCGCTGCGGGCGGCGGTGCATGAGGTGGAGAGGCGGACGGAGGAGCTGACGGCGCCGTTGGACCGGCT TCTCGACGCTGTCAACGGCGTGTTCCGGGCGGCGCTGTGCCTCCGCAACGCGGAGCTCGGGAGCATCATGGTGGGACCCCCCGAAAAGACGCCGTGTAAATAGCCGTTTCCGCCGTTTGTGGTCCGTAGCCATCCTGGTATGTCCCTGTATAAATGCAAGTATAATTTTGGGAGT ]
consensusID : consensus_13691#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 575 fasta sequence
[CGATCACCCTTAGCAACCCAGATGTTCCTCACCGACAAGTACCACGCGCTTCTCCCTTTCCACGCCAGCGGCGGCGGCGTGAAGGATCACCGGCGGAGGCCGGGCAAGGCGGTGCCCGGGGCGGCGGGTGGTGGTCCCGGGTCCGCCCGGTTCGGCGCCGCGCTGTCCGCGAGGCTCGGGAGTTTGCTGCCGCTGCCGGCGTCGCCGTTGGCTGCGTTGGCGCGGCTCGCGGATCTCCTCGCGCTTGCCCTCGCTGACGCTGTTCCCGCGTTGGCTGGTGAGGGGGACGCAGCCGCCTACTCCGCGCGCCTCTACTCCGGGGTCGCGCTGCTCAAGCCCTGCAACTGGATCACCGCGCGGCTCAACCGGCTCCGCAACCGCCGCCTGATGGCCCGGGACACGCTCCACATCCGCTCGTCGACCTCATCACCGCTGCTTTCCTCCGCCTGCAGCGCGCGCGCCACGCTCGCCTACCGTAAGTAGCGGGCCCCGGTGTCGACTCCCGATTTGATCTTGTCTATCGCCTTCGACAAGGCCCCCAACTCCCTGGGCTGGGCGGCGACGGCCCTCATCTG]
[+] EMBL CB666443 [CGATCACCCTTAGCAACCCAGATGTTCCTCACCGACAAGTACCACGCGCTTCTCCCTTTCCACGCCAGCGGCGGCGGCGTGAAGGATCACCGGCGGAGGCCGGGCAAGGCGGTGCCCGGGGCGGCGGGTGGTGGTCCCGGGTCCGCCCGGTTCGGCGCCGCGCTGTCCGCGAGGCTCGGGAGTTTGCTGCCGCTGCCGGCGTCGCCGTTGGCTGCGTTGGCGCGGCTCGCGGATCTCCTCGCGCTTGCCCTCGCTGACGCTGTTCCCGCGTTGGCTGGTGAGGGGGACGCAGCCGCCTACTCCGCGCGCCTCTACTCCGGGGTCGCGCTGCTCAAGCCCTGCAACTGGATCACCGCGCGGCTCAACCGGCTCCGCAACCGCCGCCTGATGGCCCGGGACACGCTCCACATCCGCTCGTCGACCTCATCACCGCTGCTTTCCTCCGCCTGCAGCGCGCGCGCCACGCTCGCCTACCGTAAGTAGCGGGCCCCGGTGTCGACTCCCGATTTGATCTTGTCTATCGCCTTCGACAAGGCCCCCAACTCCCTGGGCTGGGCGGCGACGGCCCTCATCTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13691#0 ----------------------------------CGCGAGCTTCACCTGAATCCGATCCG 26
consensus_13691#1 TTCCTCGAGCACTGTTGGCCTACTGGGTCTCCGCCGCGAGCTTCACCTGAATCCGATCCG 60
consensus_13691#2 ----------------------------------------------------------CG 2
**
consensus_13691#0 ATCACCCTTAGCAACCCAGATGTTCCTCACCGACAAGTACCACGCGCTTCTCCCTTTCCA 86
consensus_13691#1 ATCACCCTTAGCAACCCAGATGTTCCTCACCGACAAGTACCACGCGCTTCTCCCTTTCCA 120
consensus_13691#2 ATCACCCTTAGCAACCCAGATGTTCCTCACCGACAAGTACCACGCGCTTCTCCCTTTCCA 62
************************************************************
consensus_13691#0 CGCCAGCGGCGGCGGCGTGAAGGATCACCGGCGGAGGCCGGGCAAGGCGGTGCCCGGGGC 146
consensus_13691#1 CGCCAGCGGCGGCGGCGTGAAGGATCACCGGCGGAGGCCGGGCAAGGCGGTGCCCGGGGC 180
consensus_13691#2 CGCCAGCGGCGGCGGCGTGAAGGATCACCGGCGGAGGCCGGGCAAGGCGGTGCCCGGGGC 122
************************************************************
consensus_13691#0 GGCGGGTGGTGGTCCCGGGTCCGCCCGGTTCGGCGCCGCGCTGTCCGCGAGGCTCGGGAG 206
consensus_13691#1 GGCGGGTGGTGGTCCCGGGTCCGCCCGGTTCGGCGCCGCGCTGTCCGCGAGGCTCGGGAG 240
consensus_13691#2 GGCGGGTGGTGGTCCCGGGTCCGCCCGGTTCGGCGCCGCGCTGTCCGCGAGGCTCGGGAG 182
************************************************************
consensus_13691#0 TTTGCTGCCGCTGCCGGCGTCGCCGTTGGCTGCGTTGGCGCGGCTCGCGGATCTCCTCGC 266
consensus_13691#1 TTTGCTGCCGCTGCCGGCGTCGCCGTTGGCTGCGTTGGCGCGGCTCGCGGATCTCCTCGC 300
consensus_13691#2 TTTGCTGCCGCTGCCGGCGTCGCCGTTGGCTGCGTTGGCGCGGCTCGCGGATCTCCTCGC 242
************************************************************
consensus_13691#0 GCTTGCCCTCGCTGACGCTGTTCCCGCGTTGGCTGGTGAGGGGGACGCGGCCGCCGTCGC 326
consensus_13691#1 GCTTGCCCTCGCTGACGCTGTTCCCGCGTTGGCTGGTGAGGGGGACGCGGCCGCCGTCGC 360
consensus_13691#2 GCTTGCCCTCGCTGACGCTGTTCCCGCGTTGGCTGGTGAGGGGGACGCAGCCGCCTACTC 302
************************************************ ****** * *
consensus_13691#0 CGCGCACCTCGACGCCGGGGTCGCGCTGCTCGACGCCTGCAACGGGATCACCGCGCGCCT 386
consensus_13691#1 C----------------------------------------------------------- 361
consensus_13691#2 CG---------------------------------------------------------- 304
*
consensus_13691#0 CGACCGGCTCCGCCGCCGCCGCCTGCTGTCCCGGTTCGCGCTCCACCTCCTCTCGTCGTC 446
consensus_13691#1 ------------------------------------------------------------
consensus_13691#2 ------------------------------------------------------------
consensus_13691#0 GTCACCACCGCTGCCTTCCTCGGTCCGCCGCGCGCGCGCCGCGCTCGCCGACCGTGACGA 506
consensus_13691#1 ------------------------------------------------------------
consensus_13691#2 ------------------------------------------------------------
consensus_13691#0 GCGGGCCCCGGCGTCGCCTCCCCCGCCGCTCCCTTCTCTCCCGTTCGACCAGCCCCGCGA 566
consensus_13691#1 ------------------TCCCCCGCCGCTCCCTTCTCTCCCGTTCGACCAGCCCCGCGA 403
consensus_13691#2 ------------------CGCGCCTCTACTCCGGGGT--CGCGCTGCTCAAGCCCTGCAA 344
* ** * **** * * ** * * ***** ** *
consensus_13691#0 CCGCGTCTCCG-GCGCCGCGACCGTCCTCCTCGCCGTCGACGCCGTCTCCTCGCTCGCAG 625
consensus_13691#1 CCGCGTCTCCG-GCGCCGCGACCGTCCTCCTCGCCGTCGACGCCGTCTCCTCGCTCGCAG 462
consensus_13691#2 CTGGATCACCGCGCGGCTCAACCGGCT------CCGCAACCGCCGCCTGATGGCCCG--- 395
* * ** *** *** * * **** * *** ***** ** * ** **
consensus_13691#0 CGGCGGCCGCGTCCGCCGTCCTCTGCGGCGACGCCCTCCACCAGATCGCCTTCCCCCTGG 685
consensus_13691#1 CGGCGGCCGCGTCCGCCGTCCTCTGCGGCGACGCCCTCCACCAGATCGCCTTCCCCCTGG 522
consensus_13691#2 ----GGACACGCTCCACATCCGCT-CGTCGAC-CTCATCACC--GCTGCTTTCCTCC--G 445
** * ** * * *** ** ** **** * * **** ** **** ** *
consensus_13691#0 TCTCCGGCGAATTCCCGTGGACCGAGGCCTTCAACGCCGTGTCCATCCAGCTCGCCGCCC 745
consensus_13691#1 TCTCCGGCGAATTCCCGTGGACCGAGGCCTTCAACGCCGTGTCCATCCAGCTCGCCGCCC 582
consensus_13691#2 CCTGCAGCG------CGCGCGCCACGCTCGCCTAC--CGTAAGTAGCGGGCCC-CGGTGT 496
** * *** ** * ** * * * ** *** * * ** * * *
consensus_13691#0 TCGCCACCAAACCCAGCGAGGTGGACGCCGTCGACGAGGCCGTCGGCAAGCTCAAATCCG 805
consensus_13691#1 TCGCCACCAAACCCAGCGAGGTGGACGCCGTCGACGAGGCCGTCGGCAAGCTCAAATCCG 642
consensus_13691#2 CGACTCCCGATTTGATCTTGTCTATCGCCTTCGACAAGGCCCCC----AACTC---CCTG 549
* ** * * * * **** ***** ***** * * *** * *
consensus_13691#0 TGCTCGACAACGGCGACGGCGACCTCGACGAGGCGGCGCTGCGGGCGGCGGTGCAGGAGG 865
consensus_13691#1 TGCTCGACAACGGCGACGGCGACCTCGACGAGGCGGCGCTGCGGGCGGCGGTGCAGGAGG 702
consensus_13691#2 GGCTGGGCGGCGACGGCCCTCATCTG---------------------------------- 575
*** * * ** ** * * **
consensus_13691#0 TGGAGAGGCGGACGGAGGAGCTGACGGCGCCGTTGGACCGGCTGTCCGACGCCGTCAACG 925
consensus_13691#1 TGGAGAGGCGGACGGAGGAGCTGACGGCGCCGTTGGACCGGCTGTCCGACGCCGTCAACG 762
consensus_13691#2 ------------------------------------------------------------
consensus_13691#0 GCGTGTTCCGGGCGGCGCTGTGCCTCCGCAACGCGGAGCTCGGGAGCATCATGGTGGGAC 985
consensus_13691#1 GCGTGTTCCGGGCGGCGCTGTGCCTCCGCAACGCGGAGCTCGGGAGCATCATGGTGGGAC 822
consensus_13691#2 ------------------------------------------------------------
consensus_13691#0 CCGCCGAAAAGACGCCGTGTAAATAGCCGTTTCCACCGTGTGTCGTCCGTAGCCATACTG 1045
consensus_13691#1 CCGCCGAAAAGACGCCGTGTAAATAGCCGTTTCCACCGTGTGTCGTCCGTAGCCATACTG 882
consensus_13691#2 ------------------------------------------------------------
consensus_13691#0 GTATGTCACTGTATAAATACAAGTATAATTCTGGAAGTAGTACAGTTCTACAGGTACAGG 1105
consensus_13691#1 GTATGTCACTGTATAAATACAAGTATAATTCTGGAAGTAGTACAGTTCTACAGGTACAGG 942
consensus_13691#2 ------------------------------------------------------------
consensus_13691#0 GCAACATGGGGTGGTGTCTCAGCCAAATGCAGTGGTTTGGTGCTTTTTCTACCAGCTGTT 1165
consensus_13691#1 GCAACATGGGGTGGTGTCTCAGCCAAATGCAGTGGTTTGGTGCTTTTTCTACCAGCTGTT 1002
consensus_13691#2 ------------------------------------------------------------
consensus_13691#0 ACTACTATCTGTGTGTCAAGGTTGCCACATATGAGAACACAGTGCAATTCGCACCCTTTT 1225
consensus_13691#1 ACTACTATCTGTGTGTCAAGGTTGCCACATATGAGAACACAGTGCAATTCGCACCCTTTT 1062
consensus_13691#2 ------------------------------------------------------------
consensus_13691#0 GCAGATGTGGAATCCAGTAAAAACTTGGGAAAACCGTGGCAACTGTTCACCTACCTATGT 1285
consensus_13691#1 GCAGATGTGGAATCCAGTAAAAACTTGGGAAAACCGTGGCAACTGTTCACCTACCTATGT 1122
consensus_13691#2 ------------------------------------------------------------
consensus_13691#0 AATTTTGCGGCTTCATACATACTGTATGTATACCATGAGGAACTTTGTGAAGAAAATCTC 1345
consensus_13691#1 AATTTTGCGGCTTCATACATACTGTATGTATACCATGAGGAACTTTGGAAAAAAAAGAAA 1182
consensus_13691#2 ------------------------------------------------------------
consensus_13691#0 TCT------------------------------------------ 1348
consensus_13691#1 AAAAAAGGCCACATGTGCTCGAGCTGCAGGTCGCGGCCGCTAGAC 1227
consensus_13691#2 ---------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||