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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13809#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 1676 fasta sequence
[CGACC--ATGGAGGC-GAGCGCGACGGCGAGGAGCAGCGCCGCCCCCTCCTCTCCTCCTCCTCTCCGCCGCCACCGTCGCCAGCGGCGGAACATCAGCATCAGCACCAGCAGCAGTACCAGTACCTGGGCCGCAGCAGCTCGTCGGCGCTGCGCGGCGGCGGTGGCGGAGGAGGAGGAGGAGCGGGCTGGGGCGTGGGGCCGGAGGTCAGCGCCGCGGAGGTCAGGTCCGCCGCGTCGATCTCCTCCGCCAGCTACTACCCACCGCCGCCGGCTCTCCACCACGACGTCTACCCGCCGGACATCCACTCCCCGTCCCCATCGCCAGCTGCCCCTACTGCTCCGCACCCTCACGGAGGATTAGCAATTGTTCCTCAAGGGCCGTACCCGTATGGCGGCGAATACC-AGCCTTCTCATGATGGCAGAAGGGATGTACTGGATGAGGTAGAGATCCGGCAGCTCCTTATTGATCATGTTGGGCATCGGTGCTGCTGGGGAAGTAGGCCTGCTCGCACATGGAAAATTACCTCTATTGAGGATTGCAATGTATATGTTGGAACTTTGGAAACTTTCATCGAGGAAAGGGACACTGTAACTAACAAGGAACCCTATGATGGTGGGAAAATAGATGGAAGAGACAAGGGTCCTGTGCTTGCAGTGTGGGAACTTGATCTGAGGTCTGAGTTTCCTCTACTGTTTGTACCAGAAAAAGAAGTAATGGTCAAGATCCCTCACTCAGAAGTAATTGAAAAATGCTTAGATTGCGAGAGTCGTGGAGAGATACCATGTCCTATTTGCAATGCTGGTCAGGAGCACGGATTTTACAAGGCAAATCAGATGACCCGTTGCAGTGCATGTCATGGGAGGGGTTTACTTGCTCACCAAGATGGATCTGATACAGTATGTGGAATGTGCAGTGGTAAAGGAATGTTGCCTTGTATAGCATGTGGATCGCGTGGCCTAGTAACATGCAAGACATGTAGTGGCTATGGTTCCCTTCTCGCAAAAAGCACTGCTCATGTTCGATGGAAGACACTGTCAGCAAGAAAAGTGAGCGCAACTAGGGGAGCTGCCTCTGTGCCTGACGAAGTATTCCACAGAGCCCAGGGGATTCAGCTATGCAACATACAGGCGTACCAGTGCACTCCTGCATTCTTCGCCGATTCGTACCAGCTCAACCAGTTCTCCTCAGAAGTCGTAGCTAGCCGGCTTCCAGTTCCACCGTCCGCGAGGGTCATTTCCGAGAGGCACATCATCTCCGTCGTGCCTGTGATCCGTGTCACAATGGCTCATCGCAAGCAATGTTTCAGCTTCTACGTCGTCGGCTACAATAGGGATGTTTTCATAAGAGATTATCCTTCGAAATTCTGCTGGGGCCTCTGCTGTTGCTTTGAGTGGCTGCGGAACTAGTTATTTCTTGCCATGTGACAAAAATCGAGTGTGCAGTATTTTATAGTATTACATACGGAGTAAGGCTTGTGTATAATTATAGCAAAACCGAAGATTAAAGAGGGTTGAATGAATAAGCATAACCCTGTGTGTTATGCATTTTTTACATTACAGAAGCTGTATCCTCGTATTCTATTACTAGGGCTTCGTCCATGTAGATCATATCTGTAACAACTGCTCGGGCATGAATCAAATCAGTTGTGAAGACTTTCCCTTAAAAAAAAAAAAAAAA]
[+] EMBL CB685247 [CGACCCTATGGAGGCGGAGCGCGACGGCGAGGAGCAGCGCCGCCCCCTCCTCTCCTCCTCCTCTCCGCCGCCACCGTCGCCAGCGGCGGAACATCAGCATCAGCACCAGCAGCAGTACCAGTACCTGGGCCGCAGCAGCTCGTCGGCGCTGCGCGGCGGCGGTGGCGGAGGAGGAGGAGGAGCGGGCTGGGGCGTGGGGCCGGAGGTCAGCGCCGCGGAGGTCAAGTCCGCCGCGTCGATCTCCTCCGCCAGCTACTACCCACGGCCGCCGGCTCTCCACCACGACGTCTACCCGCCGGACATCCACTCCCCGTCCCCATCGACGGCTGCCCCTACTGCTCCGCACCCTCACGGAGGATTAACAATTG ]
[+] EMBL AU068155 [ GACC ATGGAGGC GGANGCGACGGCGAGGAGCAGCGCCGCCCCCTCCTNTCCTCCTCCTCTCCGCCGCCACCGTCGCCAGCGG GGAACATCAGCATCAGCACCAGCAGCAGTACCAGTACCTGGGCCGCAGCAGCTCGTCGGCGCTGCGCGGCGGCGGTGGCGGAGGAGGAGGAGGAGCGGGCTGGGGCGTGGGGCCGGAGGTCAGCGCCGCGGAGGTCAGGTCCGCCGCGTCGATCTCCTCCGCCAGCTACTACCCA ]
[+] EMBL AK101705 [ GAGCGCGACGGCGAGGAGCAGCGCCGCCCCCTCCTCTCCTCCTCCTCTCCGCCGCCACCGTCGCCAGCGGCGGAACATCAGCATCAGCACCAGCAGCAGTACCAGTACCTGGGCCGCAGCAGCTCGTCGGCGCTGCGCGGCGGCGGTGGCGGAGGAGGAGGAGGAGCGGGCTGGGGCGTGGGGCCGGAGGTCAGCGCCGCGGAGGTCAGGTCCGCCGCGTCGATCTCCTCCGCCAGCTACTACCCACCGCCGCCGGCTCTCCACCACGACGTCTACCCGCCGGACATCCACTCCCCGTCCCCATCGCCAGCTGCCCCTACTGCTCCGCACCCTCACGGAGGATTAGCAATTGTTCCTCAAGGGCCGTACCCGTATGGCGGCGAATACC AGCCTTCTCATGATGGCAGAAGGGATGTACTGGATGAGGTAGAGATCCGGCAGCTCCTTATTGATCATGTTGGGCATCGGTGCTGCTGGGGAAGTAGGCCTGCTCGCACATGGAAAATTACCTCTATTGAGGATTGCAATGTATATGTTGGAACTTTGGAAACTTTCATCGAGGAAAGGGACACTGTAACTAACAAGGAACCCTATGATGGTGGGAAAATAGATGGAAGAGACAAGGGTCCTGTGCTTGCAGTGTGGGAACTTGATCTGAGGTCTGAGTTTCCTCTACTGTTTGTACCAGAAAAAGAAGTAATGGTCAAGATCCCTCACTCAGAAGTAATTGAAAAATGCTTAGATTGCGAGAGTCGTGGAGAGATACCATGTCCTATTTGCAATGCTGGTCAGGAGCACGGATTTTACAAGGCAAATCAGATGACCCGTTGCAGTGCATGTCATGGGAGGGGTTTACTTGCTCACCAAGATGGATCTGATACAGTATGTGGAATGTGCAGTGGTAAAGGAATGTTGCCTTGTATAGCATGTGGATCGCGTGGCCTAGTAACATGCAAGACATGTAGTGGCTATGGTTCCCTTCTCGCAAAAAGCACTGCTCATGTTCGATGGAAGACACTGTCAGCAAGAAAAGTGAGCGCAACTAGGGGAGCTGCCTCTGTGCCTGACGAAGTATTCCACAGAGCCCAGGGGATTCAGCTATGCAACATACAGGCGTACCAGTGCACTCCTGCATTCTTCGCCGATTCGTACCAGCTCAACCAGTTCTCCTCAGAAGTCGTAGCTAGCCGGCTTCCAGTTCCACCGTCCGCGAGGGTCATTTCCGAGAGGCACATCATCTCCGTCGTGCCTGTGATCCGTGTCACAATGGCTCATCGCAAGCAATGTTTCAGCTTCTACGTCGTCGGCTACAATAGGGATGTTTTCATAAGAGATTATCCTTCGAAATTCTGCTGGGGCCTCTGCTGTTGCTTTGAGTGGCTGCGGAACTAGTTATTTCTTGCCATGTGACAAAAATCGAGTGTGCAGTATTTTATAGTATTACATACGGAGTAAGGCTTGTGTATAATTATAGCAAAACCGAAGATTAAAGAGGGTTGAATGAATAAGCATAACCCTGTGTGTTATGCATTTTTTACATTACAGAAGCTGTATCCTCGTATTCTATTACTAGGGCTTCGTCCATGTAGATCATATCTGTAACAACTGCTCGGGCATGAATCAAATCAGTTGTGAAG ]
[+] EMBL AK060608 [ GAGCGCGACGGCGAGGAGCAGCGCCGCCCCCTCCTCTCCTCCTCCTCTCCGCCGCCACCGTCGCCAGCGGCGGAACATCAGCATCAACACCAGCAGCAGTACCAGTACCTGGGCCGCAGCAGCTCGTCGGCGCTGCGCGGCGGCGGTGGCGGAGGAGGAGGAGGAGCGGGCTGGGGCGTGGGGCCGGAGGTCAGCGCCGCGGAGGTCAGGTCCGCCGCGTCGATCTCCTCCGCCAGCTACTACCCACCGCCGCCGGCTCTCCACCACGGCGTCTACCCGCCGGACATCCACTCCCCGTCCCCATCGCCAGCTGCCCCTACTGCTCCGCACCCTCACGGAGGATTAGCAATTGTTCCTCAAGGGCCGTACCCGTATGGCGGCGAATACC AGCCTTCTCATGATGGCAGAAGGGATGTACTGGATGAGGTAGAGATCCGGCAGCTCCTTATTGATCATGTTGGGCATCGGTGCTGCTGGGGAAGTAGGCCTGCTCGCACATGGAAAATTACCTCTATTGAGGATTGCAATGTATATGTTGGAACTTTGGAAACTTTCATCGAGGAAAGGGACACTGTAACTAACAAGGAACCCTATGATGGTGGGAAAATAGATGGAAGAGACAAGGGTCCTGTGCTTGCAGTGTGGGAACTTGATCTGAGGTCTGAGTTTCCTCTACTGTTTGTACCAGAAAAAGAAGTAATGGTCAAGATCCCTCACTCAGAAGTAATTGAAAAATGCTTAGATTGCGAGAGTCGTGGAGAGATACCATGTCCTATTTGCAATGCTGGTCAGGAGCACGGATTTTACAAGGCAAATCAGATGACCCGTTGCAGTGCATGTCATGGGAGGGGTTTACTTGCTCACCAAGATGGATCTGATACAGTATGTGGAATGTGCAGTGGTAAAGGAATGTTGCCTTGTATAGCATGTGGATCGCGTGGCCTAGTAACATGCAAGACATGTAGTGGCTATGGTTCCCTTCTCGCAAAAAGCACTGCTCATGTTCGATGGAAGACACTGTCAGCAAGAAAAGTGAGCGCAACTAGGGGAGCTGCCTCTGTGCCTGACGAAGTATTCCACAGAGCCCAGGGGATTCAGCTATGCAACATACAGGCGTACCAGTGCACTCCTGCATTCTTCGCCGATTCGTACCAGCTCAACCAGTTCTCCTCAGAAGTCGTAGCTAGCCGGCTTCCAGTTCCACCGTCCGCGAGGGTCATTTCCGAGAGGCACATCATCTCCGTCGTGCCTGTGATCCGTGTCACAATGGCTCATCGCAAGCAATGTTTCAGCTTCTACGTCGTCGGCTACAATAGGGATGTTTTCATAAGAGATTATCCTTCGAAATTCTGCTGGGGCCTCTGCTGTTGCTTTGAGTGGCTGCGGAACTAGTTATTTCTTGCCATGTGACAAAAATCGAGTGTGCAGTATTTTATAGTATTACATACGGAGTAAGGCTTGTGTATAATTATAGCAAAACCGAAGATTAAAGAGGGTTGAATGAATAAGCATAACCCTGTGTGTTA ]
[+] EMBL CB659151 [ ACGGCGAGGAGCAGCGCCGCCCCCTCCTCTCCTCCTCCTCTCCGCCGCCACCGTCGCCAGCGGCGGAACATCAGCATCAGCACCAGCAGCAGTACCAGTACCTGGGCCGCAGCAGCTCGTCGGCGCTGCGCGGCGGCGGTGGCGGAGGAGGAGGAGGAGCGGGCTGGGGCGTGGGGCCGGAGGTCAGCGCCGCGGAGGTCAGGTCCGCCGCGTCGATCTCCTCCGCCAGCTACTACCCACCGCCGCCGGCTCTCCACCACGACGTCTACCCGCCGGACATCCACTCCCCGTCCCCATCGCCAGCTGCCCCTACTGCTCCGCACCCTCACGGAGGATTAGCAATTGTTCCTCAAGGGCCGTACCCGTATGGCGGCGAATACC AGCCTTCTCATGATGGCAGAAGGGATGTACTGGATGAGGTAGAGATCCGGCAGCTCCTTATTGATCATGTTGGGCATCGGTGCTGCTGGGGAAGTAGGCCTGCTCGCACATGGAAAATTACCTCTATTGAGGATTGCAATGTATATGTTGGAACTTTGGAAACTTTCATCGAGGAAAGGGACACTGTAACTAACAAGGAACCCTATGATGGTGGGAAAATAGATGGAAGAGACAAGGGTCCTGTGCTTGCAGTGTGGGAACTTGATCTGAGGTCTGAGTTTCCTCTACTGTTTGTACCAGAAAAAGAAGTAATGGTCAAGATCCCTCACTCAGAAGTAATTGAAAAATGCTTAGATTGCGAGAGTCGTGGAGAGATACCA ]
[+] EMBL BP184518 [ CCCTCCTCTCCTCCTCCTCTCCGCCGCCACCGTCGCCAGCGGCGGAACATCAGCATCAGCACCAGCAGCAGTACCAGTACCTGGGCCGCAGCAGCTCGTCGGCGCTGCGCGGCGGCGGTGGCGGAGGAGGAGGAGGAGCGGGCTGGGGCGTGGGGCCGGAGGTCAGCGCCGCGGAGGTCAGGTCCGCCGCGTCGATCTCCTCCGCCAGCTACTACCCACCGCCGCCGGCTCTCCACCACGACGTCTACCCGCCGGACATCCACTCCCCGTCCCCATCGCCAGCTGCCCCTACTGCTCCGCACCCTCACGGAGGATTAGCAATTGTTCCTCAAGGGCCGTACCCGTATGGCGGCGAATACCAAGCCTTCTCATGATGGCAGAAGGGATGTACTGGATGAGGTAGAGATCCGGCAGCTCCTTATTGATCATGTTGGGCATCGGTGCTGCTGGGGAAGTAGGCCTGCTCGCACATGGAAAATTACCTCTATTGAGGATTGCAATGTATATG TGGAACTTTGGAAACTTTCATCGAGGAA ]
[+] EMBL CA999700 [ C AGCCTTCTCATGATGGCAGAAGGGATGTACTGGATGAGGTAGAGATCCGGCAGCTCCTTATTGATCATGTTGGGCATCGGTGCTGCTGGGGAAGTAGGCCTGCTCGCACATGGAAAATTACCTCTATTGAGGATTGCAATGTATATGTTGGAACTTTGGAAACTTTCATCGAGGAAAGGGACACTGTAACTAACAAGGAACCCTATGATGGTGGGAAAATAGATGGAAGAGACAAGGGTCCTGTGCTTGCAGTGTGGG ]
[+] EMBL BP184519 [ TCATGGGAGGGGTTTACTTGCTCACCAAGATGGATCTGATACAGTATGTGGAATGTGCAGTGGTAAAGGAATGTTGCCTTGTATAGCATGTGGATCGCGTGGCCTAGTAACATGCAAGACATGTAGTGGCTATGGTTCCCTTCTCGCAAAAAGCACTGCTCATGTTCGATGGAAGACACTGTCAGCAAGAAAAGTGAGCGCAACTAGGGGAGCTGCCTCTGTGCCTGACGAAGTATTCCACAGAGCCCAGGGGATTCAGCTATGCAACATACAGGCGTACCAGTGCACTCCTGCATTCTTCGCCGATTCGTACCAGCTCAACCAGTTCTCCTCAGAAGTCGTAGCTAGCCGGCTTCCAGTTCCACCGTCCGCGAGGGTCATTTCCGAGAGGCACATCATCTCCGTCGTGCCTGTGATCCGTGTCACAATGGCTCATCGCAAGCAATGTTTCAGCTTCTACGTCGTCGGCTACAATAGGGATGTTTTCATAAGAGATTATCCTTCGAAATTCTGCTGGGGCCTCTGCTGTTGCTTTGAGTGGCTGCGGAACTAGTTATTTCTTGCCATGTGACAAAAATCGAGTGTGCAGTATTTTATAGTATTACATACGGAGTAAGGCTTGTGTATAATTATAGCAAAACCGAAGATTAAAGAGGGTTGAATGAATAAGCATAACCCTGTGTGTTATGCATTTTTTACATTACAAAAa ]
[-] EMBL CB659152 [ TGGAATGTGCAGTGGTAAAGGAATGTTGCCTTGTATAGCATGTGGATCGCGTGGCCTAGTAACATGCAAGACATGTAGTGGCTATGGTTCCCTTCTCGCAAAAAGCACTGCTCATGTTCGATGGAAGACACTGTCAGCAAAAAAAGTGAGCGCAACTAGGGGAGCTGCCTCTGTGCCTGACGAAGTATTCCACAGAGCCCAGGGGATTCAGCTATGCAACATACAGGCGTACCAGTGCACTCCTGCATTCTTCGCCGATTCGTACCAGCTCAACCAGTTCTCCTCAGAAGTCGTAGCTAGCCGGCTTCCAGTTCCACCGTCCGCGAGGGTCATTTCCGAGAGGCACATCATCTCCGTCGTGCCTGTGATCCGTGTCACAATGGCTCATCGCAAGCAATGTTTCAGCTTCTACGTCGTCGGCTACAATAGGGATGTTTTCATAAGAGATTATCCTTCGAAATTCTGCTGGGGCCTCTGCTGTTGCTTTGAGTGGCTGCGGAACTAGTTATTTCTTGCCATGTGACAAAAATCGAGTGTGCAGTATTTTATAGTATTACATACGGAGTAAGGCTTGTGTATAATTATAGCAAAACCGAAGATTAAAGAGGGTTGAATGAATAAGCATAACCCTGTGTGTTATGCATTTTTTACATTACAGAAGCTGTATCCTCGTATTCTATTACTAGGGCTTCGTCCATGTAGATCATATCTGTAACAACTGCTCGGGAAGGAATCAAATCAGTTGTGAAGACTTTCCCTTAAc ]
[-] EMBL CB685248 [ TGGATCGCGTGGCCTAGTAACATGCAAGACATGTAGTGGCTATGGTTCCCTTCTCGCAAAAAGCACTGCTCATGTTCGATGGAAGACACTGTCAGCAAGAAAAGTGAGCGCAACTAGGGGAGCTGCCTCTGTGCCTGACGAAGTATTCCACAGAGCCCAGGGGATTCAGCTATGCAACATACAGGCGTACCAGTGCACTCCTGCATTCTTCGCCGATTCGTACCAGCTCAACCAGTTCTCCTCAGAAGTCGTAGCTAGCCGGCTTCCAGTTCCACCGTCCGCGAGGGTCATTTCCGAGAGGCACATCATCTCCGTCGTGCCTGTGATCCGTGTCACAATGGCTCATCGCAAGCAATGTTTCAGCTTCTACGTCGTCGGCTACAATAGGGATGTTTTCATAAGAGATTATCCTTCGAAATTCTGCTGGGGCCTCTGCTGTTGCTTTGAGTGGCTGCGGAACTAGTTATTTCTTGCCATGTGACAAAAATCGAGTGTGCAGTATTTTATAGTATTACATACGGAGTAAGGCTTGTGTATAATTATAGCAAAACCGAAGATTAAAGAGGGTGGAATGAATAAGCATAACCCTGTGTGTTATGCATTTTTTACATTACAGAAGCTGTATCCTCGTATTCTATTACTAGGGCTTCGTCCATGTAGATCATATCTGTAACAACTGCTCGGGAAGGAATCAAATCAGTCGTa ]
[+] EMBL BQ907889 [ AGCTA CCGGCTTCCAGTTCCACCGTCCGCGAGGGTCATTTCCGAGAGGCACATCATCTCCGTCGTGCCTGTGATTCGTGTCACAATGGCTCATCGCAAGCAATGTTTCAGCTTCTACGTCGTCGGCTACAATAGGGATGTTTTCATAAGAGATTATCCTTCGAAATTCTGCTGGGGCCTCTGCTGTTGCTTTGAGTGGCTGCGGAACTAGTTATTTCTTGCCATGTGACAAAAATCGAGTGTGCAGTATTTGATAGTATTACATACGGAGTAAGGCT TGTATAATTATAGC AAACCGAAGATTAAAGAGGGTTGAATAAATAAGCATAACCCTGTGTGTTATGCATTTTTTACATTACAGAA CTGTATCCTCGTATTCTATTACTAGGGCTTCGTCCATGTAGATCATATCGGTAACAACTGCTCGGGCATGAATCAAATCAGTTGTGAAGACTTTCCCTTAAAAAAA ]
[+] EMBL AU068154 [ TGGCTCATCGCAAGCAATGTTTCAGCTTCTACGTCGTCGGCTACAATNGGGATGTTTNCATAAGAGATTNTCCTTCGAAATTCTGCTGGGGCCTCTGCTGTTGCTTTGAGTGGCTGCGGAACTAGTTATTTCTTGCCATGTGACAAAAATCGAGTGTGCAGTATTTTATAGTATTNCATACGGAGTAAGGCTTGTGTATAATTATAGCAAAACCGAAGATTAAAGAGGGTTGAATGAATAAGCATAACCCTGTGTGTTATGCATTTTTTACATTACAGAAGCTGTATCCTCGTATTCTATTACTAGGGCTTCGTCCATGTAGATCATATCTGTAACAACTGCTCGGGCATGAATCAAATCAGTTGTGAAGACTTTCCCTTAAAAAAAAAAAAAAAA]
consensusID : consensus_13809#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1114 fasta sequence
[GAGCGCGACGGCGAGGAGCAGCGCCGCCCCCTCCTCTCCTCCTCCTCTCCGCCGCCACCGTCGCCAGGTAGGCGTACTGCCACCGCCTTCGCCGTCCGCCCTCGTTCTCTCCCCGATCCCCCATTTCAGGCTCCGTCTCGTGATCGTCTCACCCTGCCTGCCTCGTTTCGTCGAATTCCGTTCCCTGCAGCGGCGGAACATCAGCATCAGCACCAGCAGCAGTACCAGTACCTGGGCCGCAGCAGCTCGTCGGCGCTGCGCGGCGGCGGTGGCGGAGGAGGAGGAGGAGCGGGCTGGGGCGTGGGGCCGGAGGCCAGCGCCGCGGAGGTCAGGTCCGCCGCGTCGATCTCCTCCGCCAGCTACTACCCACCGCCGCCGGCTCTCCACCACGACGTCTACCCGCCGGACATCCACTCCCCGTCCCCATCGCCAGCTGCCCCTACTGCTCCGCACCCTCACGGAGGATTAGCAATTGTTCCTCAAGGGCCGTACCCGTATGGCGGCGAATACCAGCCTTCTCATGATGGCAGAAGGTGAGCACTTCCAATCGAAATCGGGTATTTGCTGATTAGCTGTTATGATCCTGCTGCCGCAAGATCATATAACTAAAATGGGTAGTATGAAGTGTGAACGTGGTAAGAAATTGGGGACCGAAGACGAACATAAGAGAGAGGCGCTGTGTCCATTAAAACGCGTGAGATATCCACCCTACTTGAATCCCAGTTGCTCCTATATGTCCCCTTCTGAACTTGTTTGCGCCTCCTTTTCCCATGCCAGGTACTTGTAAAGGTTCTTAAGAGTAGCCAGCTAGTTGGCAAGCAGTAGCCAGATTATCTCTCATATTTAGCAAGCGGAATGTGCAATATTTTGATTTGGTGTTGCAGTGGCCAGTTGGATAATATTGCGAAACGATATGTCTGCACAAATGGCACAGTCAGGCCAGAAAGATTTTGACAATTTGCTAGCTAATGTAGTGCCAATTACACATACTCAGATTGTAAGTAGGGCCAATTCAGTCATCTTTCTGATTGTAGCCTGATGCATGCCACCTCCTTTTACCAGTTATTGTTGAATAGGTAGTATTCACATGATGGTCAAATAGTGCAGTGATCTT]
[+] EMBL AK111481 [GAGCGCGACGGCGAGGAGCAGCGCCGCCCCCTCCTCTCCTCCTCCTCTCCGCCGCCACCGTCGCCAGGTAGGCGTACTGCCACCGCCTTCGCCGTCCGCCCTCGTTCTCTCCCCGATCCCCCATTTCAGGCTCCGTCTCGTGATCGTCTCACCCTGCCTGCCTCGTTTCGTCGAATTCCGTTCCCTGCAGCGGCGGAACATCAGCATCAGCACCAGCAGCAGTACCAGTACCTGGGCCGCAGCAGCTCGTCGGCGCTGCGCGGCGGCGGTGGCGGAGGAGGAGGAGGAGCGGGCTGGGGCGTGGGGCCGGAGGCCAGCGCCGCGGAGGTCAGGTCCGCCGCGTCGATCTCCTCCGCCAGCTACTACCCACCGCCGCCGGCTCTCCACCACGACGTCTACCCGCCGGACATCCACTCCCCGTCCCCATCGCCAGCTGCCCCTACTGCTCCGCACCCTCACGGAGGATTAGCAATTGTTCCTCAAGGGCCGTACCCGTATGGCGGCGAATACCAGCCTTCTCATGATGGCAGAAGGTGAGCACTTCCAATCGAAATCGGGTATTTGCTGATTAGCTGTTATGATCCTGCTGCCGCAAGATCATATAACTAAAATGGGTAGTATGAAGTGTGAACGTGGTAAGAAATTGGGGACCGAAGACGAACATAAGAGAGAGGCGCTGTGTCCATTAAAACGCGTGAGATATCCACCCTACTTGAATCCCAGTTGCTCCTATATGTCCCCTTCTGAACTTGTTTGCGCCTCCTTTTCCCATGCCAGGTACTTGTAAAGGTTCTTAAGAGTAGCCAGCTAGTTGGCAAGCAGTAGCCAGATTATCTCTCATATTTAGCAAGCGGAATGTGCAATATTTTGATTTGGTGTTGCAGTGGCCAGTTGGATAATATTGCGAAACGATATGTCTGCACAAATGGCACAGTCAGGCCAGAAAGATTTTGACAATTTGCTAGCTAATGTAGTGCCAATTACACATACTCAGATTGTAAGTAGGGCCAATTCAGTCATCTTTCTGATTGTAGCCTGATGCATGCCACCTCCTTTTACCAGTTATTGTTGAATAGGTAGTATTCACATGATGGTCAAATAGTGCAGTGATCTT]
consensusID : consensus_13809#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 660 fasta sequence
[ACTCCGGTAGGGGGAAGAAGGGCCGGGGCGGCCGTGAAGGGTAGCGGGTTCGGGAAGCCTCTTTAGGTGGACCAAAACGGGGGGGGTAACGCGTCGGCAACGAGGGGACCAGGGCACCCTGCATTTTGTGCGGATTTGTACCAGCTCAGCCCGTTTCCTCAGAAGTCGTAACTAGGCGGGTTCCAGTTCACACGTCCGGGAGGGTCATTTTCCAGAGGCCCATCATTTCCGTCATGCCTGTGATCCGTGTCCCAATGGCTCATGGCAAGCAATGTTTCAACTTTTACGTCGTCGGGTACAATAGGGATGTTTTCATAAGAGATTGTCCTTCGAAATTCCACTGGGGCCTCTGCTGTTGCTTTGAGTGGCTTCGGAACTAGTTATTTCTTGCCATGTGACAAAAATGGAGTGTGCAGTATTTGATAGTTTTACATACGGAGTAAGGCTTGTATAATTATAGCAAAACCGAAGATTAAAGAGGGTTGAATAAATAAGCATAACCCTGTGTGTTATGCATTTTTTACATTACAAAAGCCGTATCCTCGTATTCTATTACTAGGGCTTGGTCCATGTAGATTGTATTTGTAACAACTGCTCGGGCATGAATCAAATCAGTTGTGAAGACTTTCCCTTCCAAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CA762176 [ACTCCGGTAGGGGGAAGAAGGGCCGGGGCGGCCGTGAAGGGTAGCGGGTTCGGGAAGCCTCTTTAGGTGGACCAAAACGGGGGGGGTAACGCGTCGGCAACGAGGGGACCAGGGCACCCTGCATTTTGTGCGGATTTGTACCAGCTCAGCCCGTTTCCTCAGAAGTCGTAACTAGGCGGGTTCCAGTTCACACGTCCGGGAGGGTCATTTTCCAGAGGCCCATCATTTCCGTCATGCCTGTGATCCGTGTCCCAATGGCTCATGGCAAGCAATGTTTCAACTTTTACGTCGTCGGGTACAATAGGGATGTTTTCATAAGAGATTGTCCTTCGAAATTCCACTGGGGCCTCTGCTGTTGCTTTGAGTGGCTTCGGAACTAGTTATTTCTTGCCATGTGACAAAAATGGAGTGTGCAGTATTTGATAGTTTTACATACGGAGTAAGGCTTGTATAATTATAGCAAAACCGAAGATTAAAGAGGGTTGAATAAATAAGCATAACCCTGTGTGTTATGCATTTTTTACATTACAAAAGCCGTATCCTCGTATTCTATTACTAGGGCTTGGTCCATGTAGATTGTATTTGTAACAACTGCTCGGGCATGAATCAAATCAGTTGTGAAGACTTTCCCTTCCAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13809#0 CGACCATGGAGGCGAGCGCGACGGCGAGGAGCAGCGCCGCCCCCTCCTCTCCTCCTCCTC 60
consensus_13809#2 ------------------------------------------------------------
consensus_13809#1 ------------------------------------------------------------
consensus_13809#0 TCCGCCGCCACCGTCGCCAGCGGCGGAACATCAGCATCAGCACCAGCAGCAGTACCAGTA 120
consensus_13809#2 ------------------------------------------------------------
consensus_13809#1 ------------------------------------------------------------
consensus_13809#0 CCTGGGCCGCAGCAGCTCGTCGGCGCTGCGCGGCGGCGGTGGCGGAGGAGGAGGAGGAGC 180
consensus_13809#2 ------------------------------------------------------------
consensus_13809#1 ------------------------------------------------------------
consensus_13809#0 GGGCTGGGGCGTGGGGCCGGAGGTCAGCGCCGCGGAGGTCAGGTCCGCCGCGTCGATCTC 240
consensus_13809#2 ------------------------------------------------------------
consensus_13809#1 ------------------------------------------------------------
consensus_13809#0 CTCCGCCAGCTACTACCCACCGCCGCCGGCTCTCCACCACGACGTCTACCCGCCGGACAT 300
consensus_13809#2 ------------------------------------------------------------
consensus_13809#1 ------------------------------------------------------------
consensus_13809#0 CCACTCCCCGTCCCCATCGCCAGCTGCCCCTACTGCTCCGCACCCTCACGGAGGATTAGC 360
consensus_13809#2 ------------------------------------------------------------
consensus_13809#1 ------------------------------------------------------------
consensus_13809#0 AATTGTTCCTCAAGGGCCGTACCCGTATGGCGGCGAATACCAGCCTTCTCATGATGGCAG 420
consensus_13809#2 ------------------------------------------------------------
consensus_13809#1 ------------------------------------------------------------
consensus_13809#0 AAGGGATGTACTGGATGAGGTAGAGATCCGGCAGCTCCTTATTGATCATGTTGGGCATCG 480
consensus_13809#2 ------------------------------------------------------------
consensus_13809#1 ------------------------------------------------------------
consensus_13809#0 GTGCTGCTGGGGAAGTAGGCCTGCTCGCACATGGAAAATTACCTCTATTGAGGATTGCAA 540
consensus_13809#2 ------------------------------------------------------------
consensus_13809#1 ------------------------------------------------------------
consensus_13809#0 TGTATATGTTGGAACTTTGGAAACTTTCATCGAGGAAAGGGACACTGTAACTAACAAGGA 600
consensus_13809#2 ------------------------------------------------------------
consensus_13809#1 ----------------------------------------------------GAGCGCGA 8
consensus_13809#0 ACCCTATGATGGTGGGAAAATAGATGGAAGAGACAAGGGTCCTGTGCTTGCAGTGTGGGA 660
consensus_13809#2 ------------------------------------------------------------
consensus_13809#1 CGGCGAGGAGCAGCGCCGCCCCCTCCTCTCCTCCTCCTCTCCGCCGCCACCGTCGCCAGG 68
consensus_13809#0 ACTTGATCTGAGGTCTGAGTTTCCTCTACTGTTTGTACCAGAAAAAGAAGTAATGGTCAA 720
consensus_13809#2 ------------------------------------------------------------
consensus_13809#1 TAGGCGTACTGCCACCGCCTTCGCCGTCCGCCCTCGTTCTCTCCCCGATCCCCCATTTCA 128
consensus_13809#0 GATCCCTCACTCAGAAGTAATTGAAAAATGCTTAGATTGCGAGAGTCGTGGAGAGATACC 780
consensus_13809#2 ------------------------------------------------------------
consensus_13809#1 GGCTCCGTCTCGTGATCGTCTCACCCTGCCTGCCTCGTTTCGTCGAATTCCGTTCCCTGC 188
consensus_13809#0 ATGTCCTATTTGCAATGCTGGTCAGGAGCACGGATTTTACAAGGCAAATCAGATGACCCG 840
consensus_13809#2 ------------------------------------------------------------
consensus_13809#1 AGCGGCGGAACATCAGCATCAGCACCAGCAGCAGTACCAGTACCTGGGCCGCAGCAGCTC 248
consensus_13809#0 TTGCAGTGCATGTCATGGGAGGGGTTTACTTGCTCACCAAGATGGATCTGATACAGTATG 900
consensus_13809#2 ------------------------------------------------------------
consensus_13809#1 GTCGGCGCTGCGCGGCGGCGGTGGCGGAGGAGGAGGAGGAGCGGGCTGGGGCGTGGGGCC 308
consensus_13809#0 TGGAATGTGCAGTGGTAAAGGAATGTTGCCTTGTATAGCATGTGGATCGCGTGGCCTAGT 960
consensus_13809#2 ------------------------------------------------------------
consensus_13809#1 GGAGGCCAGCGCCGCGGAGGTCAGGTCCGCCGCGTCGATCTCCTCCGCCAGCTACTACCC 368
consensus_13809#0 AACATGCAAGACATGTAGTGGCTATGGTTCCCTTCTCGCAAAAAGCACTGCTCATGTTCG 1020
consensus_13809#2 ----------------------------------------------ACTCCGGTAGGGGG 14
consensus_13809#1 ACCGCCGCCGGCTCTCCACCACGACGTCTACCCGCCGGACATCCACTCCCCGTCCCCATC 428
* *
consensus_13809#0 ATGGAAGACACTGTCAGCAAGAAAAGTGAGCGC--AACTAGGGGAGCTGCCTCTGTGCCT 1078
consensus_13809#2 AAGAAGGGCCGGGGCGGCCGTGAAGGGTAGCG---GGTTCGGGAAGCCTCTTT------- 64
consensus_13809#1 GCCAGCTGCCCCTACTGCTCCGCACCCTCACGGAGGATTAGCAATTGTTCCTCAAGGGCC 488
* * ** * ** * * * *
consensus_13809#0 GACGAAGTA-TTCCACAGAGCCCAGGGGATTCAGCTATGCAACATACAGGCGTACCAGTG 1137
consensus_13809#2 ----AGGTG-GACCAAAA----CGGGGGGGGTAACGCGTCGGCA-ACGAGGGGACCAGGG 114
consensus_13809#1 GTACCCGTATGGCGGCGAATACCAGCCTTCTCATGATGGCAGAAGGTGAGCACTTCCAAT 548
** * * * * * * * *
consensus_13809#0 CACTCCTGCATTCTTCGCCGATTCGTACCAGCTCAACCAGTTCTCCTCAGAAGTCGTAGC 1197
consensus_13809#2 CAC-CCTGCATTTTGTGCGGATTTGTACCAGCTCAGCCCGTT-TCCTCAGAAGTCGTAAC 172
consensus_13809#1 CGAAATCGGGTATT-TGCTGATTAGCTGTTA-TGATCCTGCTGCCGCAAGATCATATAAC 606
* * * * ** **** * * * ** * * * *** ** *
consensus_13809#0 TAGCCGGCTTCCAGTTCCACCGTCCGCGAGGGTCATTTCCGAGAGGCACATCATCTCCGT 1257
consensus_13809#2 TAGGCGGGTTCCAGTTCACACGTCCGGGAGGGTCATTTTCCAGAGGCCCATCATTTCCGT 232
consensus_13809#1 TAAAATGGGT--AGTATGAAGTGTGAACGTGGTAAGAAATTGGGGACCGAAGACGAACAT 664
** * * *** *** * * * * * * * *
consensus_13809#0 CGTGCCTGTGATCCGTGTCACAATGGCTCATCGCAAGCAATGTTTCAGCTTCTACGTCGT 1317
consensus_13809#2 CATGCCTGTGATCCGTGTCCCAATGGCTCATGGCAAGCAATGTTTCAACTTTTACGTCGT 292
consensus_13809#1 AAGAGAGAGGCGCTGTGTC-CATTAAAACGCGTGAGATATCCACCCTACTTGAATCCCAG 723
* * ***** ** * * * * * *** * *
consensus_13809#0 CGGCTACAATAGGGATGTTTTCATAAGAGATTATCCTTCGAAATTCTG---CTGGGGCCT 1374
consensus_13809#2 CGGGTACAATAGGGATGTTTTCATAAGAGATTGTCCTTCGAAATTCCA---CTGGGGCCT 349
consensus_13809#1 TTGCTCCTATATGTCCCCTTCTGAACTTGTTTGCGCCTCCTTTTCCCATGCCAGGTACTT 783
* * * *** * ** * * ** * ** * * * ** * *
consensus_13809#0 CTGCTGTTGCTTT-GAGTGGC-------TGCGGAACTAGTT-----ATTTCTTGCCATGT 1421
consensus_13809#2 CTGCTGTTGCTTT-GAGTGGC-------TTCGGAACTAGTT-----ATTTCTTGCCATGT 396
consensus_13809#1 GTAAAGGTTCTTAAGAGTAGCCAGCTAGTTGGCAAGCAGTAGCCAGATTATCTCTCATAT 843
* * * *** **** ** * * ** *** *** * *** *
consensus_13809#0 GACAAAAATCGAGTGTGCAGTATTTTATAGTATTACATACGGAGTAAGGCTTGTGTATAA 1481
consensus_13809#2 GACAAAAATGGAGTGTGCAGTATTTGATAGTTTTACATACGGAGTAAGGCTTGT--ATAA 454
consensus_13809#1 TTAGCAAGCGGAATGTGCAATATTT--TGATTTGGTGT-TGCAGT--GGCCAGTTGGATA 898
** ** ****** ***** * * * * * *** *** ** *
consensus_13809#0 TTATAGCAAAACCGAAGATTAAAGAGGGTTGAATGAATAAGC----ATAACCCTGTGTGT 1537
consensus_13809#2 TTATAGCAAAACCGAAGATTAAAGAGGGTTGAATAAATAAGC----ATAACCCTGTGTGT 510
consensus_13809#1 ATATTGCGAAACGATATGTCTGCACAAATGGCACAGTCAGGCCAGAAAGATTTTGACAAT 958
*** ** **** * * * * * * ** * * ** *
consensus_13809#0 TATGCATTTTTTACATTACAGAAGCTGTATCCTCGTATTCTATTACTAGGGCTTCGTCCA 1597
consensus_13809#2 TATGCATTTTTTACATTACAAAAGCCGTATCCTCGTATTCTATTACTAGGGCTTGGTCCA 570
consensus_13809#1 TTGCTAGCTAATGTAGTGCCAATTACACATACTCAGATTGTA--AGTAGGGCCAATTCAG 1016
* * * * * * * * ** *** *** ** * ****** **
consensus_13809#0 TGTAGATCATATCTGTAACA-ACTGCTCGGGCATGAATCAAATCAGTTGT----GAAGAC 1652
consensus_13809#2 TGTAGATTGTATTTGTAACA-ACTGCTCGGGCATGAATCAAATCAGTTGT----GAAGAC 625
consensus_13809#1 TCATCTTTCTGATTGTAGCCTGATGCATGCCACCTCCTTTTACCAGTTATTGTTGAATAG 1076
* * * **** * *** * * * ***** * *** *
consensus_13809#0 TTTCCCTTAAAAAAAAAAAAAAAA-------------- 1676
consensus_13809#2 TTTCCCTTCCAAAAAAAAAAAAAAAAAAAAAAAAA--- 660
consensus_13809#1 GTAGTATTCACATGATGGTCAAATAGTGCAGTGATCTT 1114
* ** * * ***
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||