These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14063#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 1938 fasta sequence [CCGTCTGTCTCTGCCCCACCCACGCATACTAGGAAGGCAGGGGAGACGAGGAGCCAGAGCCAAGTCAAGCCGCTTCCTCTCCTCTCGTCTCGGCGCCTCACTCGATCTCCTTCCTCCACTGTCGCTCAGATCGACGCGGGCCATGGCCAAGCCTAGGGCCTCCGCCGCCGCGGCGAAGGCGCCAGCCTCCACGCCGCCCAAGACGGTGCACTCGGCGCTCGTCACCTACGCCTCCATGCTCTCCCTCCTCTCCCTCTGCCCGCCCTTCGTCATCCTCCTGTGGTACACGATGGTGCACGCGGACGGATCCGTGGTGCGGGCGTACGAGCACCTCCGCGAGCACGGGGTGCTGGAGGGGCTCAAGGCCATCTGGCCCATGCCAACCATGGCCGCCTGGAAGATCATCTTCGGCTTCGGCCTCTTCGAGGCCGCGCTGCAGCTTCTCCTCCCCGGGAAGCGCTTCGAGGGCCCCGTCTCCCCCTCGGGCAACGTGCCCGTCTACAAGGCAAATGGCTTACAAGCATATGCAGTGACCTTGATAACATACCTGAGCCTGTGGTGGTTTGGAATTTTTAACCCTGCAATAGTATACGATCACTTGGGGGAAATATACTCTGCTCTTGTATTTGGAAGCTTTGTGTTCTGTATTTTTCTGTACATAAAGGGTCATCTTGCTCCATCTTCATCTGATTCTGGATCCTCAGGGAATGTGATAATTGATTTCTACTGGGGAATGGAACTATATCCTCGCATTGGTAAGCACTTTGATATCAAAGTGTTCACAAACTGCCGTTTTGGGATGATGTCCTGGGCTGTTCTTGCTGTAACCTACTGCATAAAGCAGTATGAAATGAATGGCCGAGTTGCAGATTCAATGCTTGTGAATACTGCATTGATGTTGATCTATGTCACCAAGTTCTTCTGGTGGGAATCTGGATACTGGTGCACTATGGACATTGCTCATGATAGAGCTGGTTTCTACATTTGCTGGGGATGCTTGGTATGGGTTCCATCAATATACACCTCTCCTGGAATGTACCTTGTCAACCACCCTGTGAATTTGGGTCCCCAGCTAGCACTCTCAATTCTCCTTGCTGGAATATTGTGCATATATATAAACTATGACTGTGATCGTCAGCGCCA--AATTCCGTCGGACAAATGGGAAATGCTCAATATGGGGCAAAGCTCCATCTAAGATTGTTGCTTCCTATCAGACTACAAATGGAGAAACAAAAAGCAGTCTTCTCTTGACTTCTGGATGGTGGGGCTTGTCTCGTCATTTTCACTATGTTCCAGAGATTCTATCTGC-TTTTTTCTGGA-CAGTTCCAGCTCTTTTTGATCATTTCCTGCCGTAC-TTCT-ATGTGATCTTTCTGA-CCA-TATTGC-TGTTCGA-CCGAGC-TAAAA-GGGA-TGATGA-CCGA-T-GCTCATC-AAAGTATGGC--AAGTA-TTGGAAGATGTACTGCAACAAAGTACCGTG-CA-GGGTTATTCCTGGCA-TTTACTGAGGTTGTTGA-CCATGTTCAACAAC--TTCTC--GGGATAAAACTCAGCC-ATG--TT-GTGAATTCCTTTCTC-TGGGACGATCTACTGCTGTTTGT-GTAATA-TGTCATT-AGCTT-GATGTATGCA-GGA-TTA-GATTCGGGCTGATT-GGTTTC-AACCTTTT-GAGTTTGCTGTATCCAACCCTGACACAGATGAGTCAACGATGCCGCCAAATCGTGATTTTTCTTGTTAGCTCGCTGATAGGAGAGATGATTGCAGGATCATAGTTTGTGTAGTTTGTACCTTATAATGGATGTTTCGACTTCATTTTTCTGCTAGAAGCGATTAGGCAGCACGAAAATGAAATTGTTTGAGGTTCTGTACTGCTCGAATAATGTTACTGCAACTGTATTATCCA-TGAACTGTAATAATTCAAAGTTTGGCAACAGG-CATGGTGATTGGTTCTAAAAAAAAAAAAAA] [+] EMBL AK100199 [CCGTCTGTCTCTGCCCCACCCACGCATACTAGGAAGGCAGGGGAGACGAGGAGCCAGAGCCAAGTCAAGCCGCTTCCTCTCCTCTCGTCTCGGCGCCTCACTCGATCTCCTTCCTCCACTGTCGCTCAGATCGACGCGGGCCATGGCCAAGCCTAGGGCCTCCGCCGCCGCGGCGAAGGCGCCAGCCTCCACGCCGCCCAAGACGGTGCACTCGGCGCTCGTCACCTACGCCTCCATGCTCTCCCTCCTCTCCCTCTGCCCGCCCTTCGTCATCCTCCTGTGGTACACGATGGTGCACGCGGACGGATCCGTGGTGCGGGCGTACGAGCACCTCCGCGAGCACGGGGTGCTGGAGGGGCTCAAGGCCATCTGGCCCATGCCAACCATGGCCGCCTGGAAGATCATCTTCGGCTTCGGCCTCTTCGAGGCCGCGCTGCAGCTTCTCCTCCCCGGGAAGCGCTTCGAGGGCCCCGTCTCCCCCTCGGGCAACGTGCCCGTCTACAAGGCAAATGGCTTACAAGCATATGCAGTGACCTTGATAACATACCTGAGCCTGTGGTGGTTTGGAATTTTTAACCCTGCAATAGTATACGATCACTTGGGGGAAATATACTCTGCTCTTGTATTTGGAAGCTTTGTGTTCTGTATTTTTCTGTACATAAAGGGTCATCTTGCTCCATCTTCATCTGATTCTGGATCCTCAGGGAATGTGATAATTGATTTCTACTGGGGAATGGAACTATATCCTCGCATTGGTAAGCACTTTGATATCAAAGTGTTCACAAACTGCCGTTTTGGGATGATGTCCTGGGCTGTTCTTGCTGTAACCTACTGCATAAAGCAGTATGAAATGAATGGCCGAGTTGCAGATTCAATGCTTGTGAATACTGCATTGATGTTGATCTATGTCACCAAGTTCTTCTGGTGGGAATCTGGATACTGGTGCACTATGGACATTGCTCATGATAGAGCTGGTTTCTACATTTGCTGGGGATGCTTGGTATGGGTTCCATCAATATACACCTCTCCTGGAATGTACCTTGTCAACCACCCTGTGAATTTGGGTCCCCAGCTAGCACTCTCAATTCTCCTTGCTGGAATATTGTGCATATATATAAACTATGACTGTGATCGTCAGCGCCA AATTCCGTCGGACAAATGGGAAATGCTCAATATGGGGCAAAGCTCCATCTAAGATTGTTGCTTCCTATCAGACTACAAATGGAGAAACAAAAAGCAGTCTTCTCTTGACTTCTGGATGGTGGGGCTTGTCTCGTCATTTTCACTATGTTCCAGAGATTCTATCTGC TTTTTTCTGGA CAGTTCCAGCTCTTTTTGATCATTTCCTGCCGTAC TTCT ATGTGATCTTTCTGA CCA TATTGC TGTTCGA CCGAGC TAAAA GGGA TGATGA CCGA T GCTCATC AAAGTATGGC AAGTA TTGGAAGATGTACTGCAACAAAGTACCGTG CA GGGTTATTCCTGGCA TTTACTGAGGTTGTTGA CCATGTTCAACAAC TTCTC GGGATAAAACTCAGCC ATG TT GTGAATTCCTTTCTC TGGGACGATCTACTGCTGTTTGT GTAATA TGTCATT AGCTT GATGTATGCA GGA TTA GATTCGGGCTGATT GGTTTC AACCTTTT GAGTTTGCTGTATCCAACCCTGACACAGATGAGTCAACGATGCCGCCAAATCGTGATTTTTCTTGTTAGCTCGCTGATAGGAGAGATGATTGCAGGATCATAGTTTGTGTAGTTTGTACCTTATAATGGATGTTTCGACTTCATTTTTCTGCTAGAAGCGATTAGGCAGCACGAAAATGAAATTGTTTGAGGTTCTGTACTGCTCGAATAATGTTGCTGCAACTGTATTATCCA TGAACTGTAATAATTC ] [+] EMBL CB665569 [ GATCTCCTTCCTCCACTGTCGCTCAGATCGACGCGGGCCATGGCCAAGCCTAGGGCCTCCGCCGCCGCGGCGAAGGCGCCAGCCTCCACGCCGCCCAAGACGGTGCACTCGGCGCTCGTCACCTACGCCTCCATGCTCTCCCTCCTCTCCCTCTGCCCGCCCTTCGTCATCCTCCTGTGGTACACGATGGTGCACGCGGACGGATCCGTGGTGCGGGCGTACGAGCACCTCCGCGAGCACGGGGTGCTGGAGGGGCTCAAGGCCATCTGGCCCATGCCAACCATGGCCGCCTGGAAGATCATCTTCGGCTTCGGCCTCTTCGAGGCCGCGCTGCAGCTTCTCCTCCCCGGGAAGCGCTTCGAGGGCCCCGTCTCCCCCTCGGGCAACGTGCCCGTCTACAAGGCAAATGGCTTACAAGCATATGCAGTGACCTTGATAACATACCTGAGCCTGTGGTGGTTTGGAATTTTTAACCCTGCAATAGTATACGATCACTTGGGGGAAATATACTCTGCTCTTGTATTTGGAAGCTTTGTGTTCTGTATTTTTCTGTACATAAAGGGTCATCTTGCTCCATCTTCATCTGATTCTGGATCCTCAGGGAATGTGATAATTGATTTCTACTGGGGAATGGAACTATATCCTCGCATTGGTAAGCACTTTGATATCAAAGTGTTCACAAACTGCCGTTTTGGGATGATGTCCTGGGCTGTTCTTGCTGTAACCTACTGCATAAAGCAGTATGAAATGAATGGCCGAGTTGCAGATTCAATGCTTGg ] [+] EMBL CB669945 [ TCCTCCACTGTCGCTCAGATCGACGCGGGCCATGGCCAAGCCTAGGGCCTCCGCCGCCGCGGCGAAGGCGCCAGCCTCCACGCCGCCCAAGACGGTGCACTCGGCGCTCGTCACCTACGCCTCCATGCTCTCCCTCCTCTCCCTCTGCCCGCCCTTCGTCATCCTCCTGTGGTACACGATGGTGCACGCGGACGGATCCGTGGTGCGGGCGTACGAGCACCTCCGCGAGCACGGGGTGCTGGAGGGGCTCAAGGCCATCTGGCCCATGCCAACCATGGCCGCCTGGAAGATCATCTTCGGCTTCGGCCTCTTCGAGGCCGCGCTGCAGCTTCTCCTCCCCGGGAAGCGCTTCGAGGGCCCCGTCTCCCCCTCGGGCAACGTGCCCGTCTACAAGGCAAATGGCTTACAAGCATATGCAGTGACCTTGATAACATACCTGAGCCTGTGGTGGTTTGGAATTTTTAACCCTGCAATAGTATACGATCACTTGGGGGAAATATACTCTGCTCTTGTATTTGGAAGCTTTGTGTTCTGTATTTTTCTGTACATAAAGGGGCATCTTGCTCCATCTTCATCTGATTCTGGATCCTCAGGGAATGTGATAATTGATTTCTACTGGGGAATGGAACTATATCCTCGCATTGGTAAGCACTTTGATATCAAAGTGTTCACAAACTGCCGTTTTGGGATGATGTCCTGGGCTGTTCTTGCTGTAACCTACTGCATAAAGCAGTATGAAATGAATG ] [+] EMBL CF303445 [ CAACCATGGCCGCCTGGAAGATCATCTTCGGCTTCGGCCTCTTCGAGGCCGCGCTGCAGCTTCTCCTCCCCGGGAAGCGCTTCGAGGGCCCCGTCTCCCCCTCGGGCAACGTGCCCGTCTACAAGGCAAATGGCTTACAAGCATATGCAGTGACCTTGATAACATACCTGAGCCTGTGGTGGTTTGGAATTTTTAACCCTGCAATAGTATACGATCACTTGGGGGAAATATACTCTGCTCTTGTATTTGGAAGCTTTGTGTTCTGTATTTTTCTGTACATAAAGGGTCATCTTGCTCCATCTTCATCTGATTCTGGATCCTCAGGGAATGTGATAATTGATTTCTACTGGGGAATGGAACTATATCCTCGCATTGGTAAGCACTTTGATATCAAAGTGTTCACAAACTGCCGTTTTGGGATGATGTCCTGGGCTGTTCTTGCTGTAACCTACTGCATAAAGCAGTATGAAATGAATGGCCGAGTTGCAGATTCAATGCTTGTGAATACTGCATTGATGTTGATCTATGTCACCAAGTTCTTCTGGTGGGAATCTGGATACTGGTGCACTATGGACATTGCTCATGATAGAGCTGGTTTCTACATTTGCTGGGGATGCTTGGTATGGGTTCCATCAA ] [+] EMBL CA753545 [ CCCTGTGAATTTGGGTCCCCAGCTAGCACTCTCAATTCTCCTTGCTGGAATATTGTGCATATATATAAACTATGACTGTGATCGTCAGCGCCAAGAATTCCGTCGGACAAATGGGAAATGCTCAATATGGGGCAAAGCTCCATCTAAGATTGTTGCTTCCTATCAGACTACAAATGGAGAAACAAAAAGCAGTCTTCTCTTGACTTCTGGATGGTGGGGCTTGTCTCGTCATTTTCACTATGTTCCAGAGATTCTATCTGC TTTTTTCTGGA CAGTTCCAGCTCTTTTTGATCATTTCCTGCCGTAC TTCT ATGTGATCTTTCTGA CCA TATTGC TGTTCGA CCGAGC TAAAA GGGA TGATGA CCGA T GCTCATC AAAGTATGGC AAGTA TTGGAAGATGTACTGCAACAAAGTACCGTG CA GGGTTATTCCTGGCA TTTACTGAGGTNGTNGA CCATGTNCAACAAC TTCTC GGGATAAAACTCAGCC ATG TG GTGAATTCCTTTCTC TGGGACGATCTACTGCTGTTTGT GTAATATTGTCA T AGCCT GATGTATGCANGAA ATA GA TCNGGCTGA T GGGTTC AA CTTTT GAGTTTGCTGTATTCAACCCGGACCCAGATGAGTC ACGATGCCGCC AATCGTGAT ] [+] EMBL C73396 [ GAGAAACAAAAAGCAGTCTTCTCTTGACTTCTGGATGGTGGGGCTTGTNTCGTCATTTTNACTATGTTCCAGAGATTCTATCTGC TTTTTNCTGGA CAGTTCCAGCTCTTTTTNATCATTTCCTGCCGTAC TTCT ATGTNATCTTNCTGA CCA TATTGC TGTTCGA CCGAGC TAAAA GGGA TGATGA CCGA T GCTCATC AAAGTATGGC AAGTA TTGGAAGATGTACTGCAACAAAGTACCGTG CA GGGTTATTCCTGGCA TTTACTGAGGTTGTTGA CCATGTTCAACAAC TTCTC GGGATAAAACTCAGCC ATGT TT GTGAATTCCTTTCTC TGGGACGATCTACTGCTGTTTGT GTAATA TGTCATT AGCTT GATGTATGCA GGA TTAGGATTCGGGCTGATTNGGTTTC AACCTTTT GAGGTTGCTGTATCCAAC ] [+] EMBL C74691 [ ggacaGGTGGGGCTTGTCTCGTCATNTTCACTATGTTCCAGAGATTCTATCTGC TTTTTTCTGGA CAGTTCCAGCTCTTTTTGATCATTTCCTGCCGTAC TTCT ATGTGATCTTTCTGA CCA TATTGC TGTTCGA CCGAGC TAAAA GGGA TGATGA CCGA T GCTCATC AAAGTATGGC AAGTA TTGGAAGATGTACTGCAACANAGTACCGTG CA GGGTTATTCCTGGCA TTTACTGAGGTTGTTGA CCATGTTCAACAAC TTCTC GGGATAAAACTCAGCC ATG TT GTGAATTCCTTNCTC TGGGACGATCTACTGCTGTTTGT GTAATA TGTCATT AGCNT GATGTATGCA GGA TTA GATTCGGGCT ] [-] EMBL CB665570 [ CGTCATTTTCACTATGTTCCAGAGATTCTATCTGC TTTTTTCTGGA CAGTTCCAGCTCTTTTTGATCATTTCCTGCCGTAC TTCT ATGTGATCTTTCTGA CCA TATTGC TGTTCGA CCGAGC TAAAA GGGA TGATGC CCGA T GCTCATC AAAGTATGGC AAGTA TTGGAAGATGTACTGCAACAAAGTCCCGTG CA GGGTTATTCCTGGCA TTTACTGAGGTTGTTGC CCATGTTCAACAAC TTCTC GGGATAAAACTCACCC ATG TT GTGAATTCCTTTCTC TGGGACGATCTACTGCTGTTTGT GTAATA TGTCATT AGCTT GATGTATGCA GGA TTA GATTCGGGCTGATT GGTTTC ACCCTTTT GAGTTTGCTGTATCCACCCCTGCCCCAGATGAGTCAACGATGCCGCCAAATCGTGATTTTTCTTGTTAGCTCGCTGATAGGAGAGATGATTGCAGGATCATAGTTTGTGTAGTTTGTCCCTTATAATGGATGTTTCGACTTCATTTTTCTGCTAGAAGCGATTAGGCAGCCCGAAAATGAAATTGTTCGAGGTTCTGTACTGCTCGAATAATGTTGCTGCACCTGTATTATCCA AGAGGGGTAATAATTC ] [+] EMBL BI806455 [ TCTGCGCTTTTTCGGGACCAGTCCCACCTC TTTGACCATTTCC GCCGNACTTTCTAATGGGATTCTTCTGACCCATTATTGCTTGTTCGACCCGAACTTAAAAGGGGATTGATGACCCGAGTGGCTCATCAAAAGTATGGCCAAAGTATTTGGAAGATGTACTGCAACAAAGTACCGTGCCAGGGGTTATTCCTGGCATTTTACTGA GTTGTTGA CCATGTTCAACAAC TTCTC GGGATAAAACTCAGCC ATG TT GTGAATTCCTTTCTC TGGGACGATCTACTGCTGTTTGT GTAATA TGTCATT AGCTT GATGTATGCA GGA TTA GATTCGGGCTGATT GGTTTC AACCTTTT GAGTTTGCTGTATCCAACCCTGACACAGATGAGTCAACGATGCCGCCCAATCGNGATTTNTCTTGTTAGCTCGCTGATAGGAGAGATGATTGCAGGATCATAGTTTGTGTAGTTTGTACCTTATAATGGATGTTTCGACTTCATTTTTCTGCTAGAAGCGATTAGGCAGCACGAAAATGAAATTGTTTGAGGTTCTGTACTGCTCGAATAATGTTGCTGCAACTGTATTATCCACTGAACTGTAATAATTCAAAaaaaaaa ] [+] EMBL BM421372 [ ccaGGTTATTCCTGNCA TTTACTGA GTTGTTGACCCATGTTCAACAAC TTCTC GGGATAAAACTCA CC ATG TT GTGAATTCCTTTCTC TGGGACGATCTACTGCTGTTTGT GTAATA TGTCATT AGCTT GATGTATGCA GGA TTA GATTCGGGCTGATT GGTTTC AACCTTTT GAGTTTGCTGTATCCAACCCTGACACAGATGAGTCAACGATGCCGCCAAATCGTGATTTTTCTTGTTAGCTCGCTGATAGGAGAGATGATTGCAGGATCATAGTTTGTGTAGTTTGTACCTTATAATGGATGTTTCGACTTCATTTTTCTGCTAGAAGCGATTAGGCAGCACGAAAATGAAATTGTTTGAGGTTCTGTACTGCTCGAATAATGTTACTGCAACTGTATTATCCA TGAACTGTAATAATTCAAAGTTTGGCCACAGG CATGGTGATTGGTTCTAAAAAAAA ] [+] EMBL BQ905953 [ tgGTTGA CCCTGTTCAACAACTTTTCTCNGGGGATAAAACTCACCCAATGGTTTGGGGANTCCCTTTCTCTTGGGACGATCTACTGCTGTTTGTGGTAANA GTCATTAAGCTTGGATGTATGCA GGATTTA GATTC GGCTGATT GGTTTCAAACCTTTTNGAGTTTGCTGTATCCAACCCTGACACAGATGAGTCAACGATGCCGCCAAATCGTGATTTTTCTTGTTAGCTCGCTGATAGGAGAGATGATTGCAGGATCATAGTTTGTGTAGTTTGTACCTTATAATGGATGTTTCGACTTCATTTTTCTGCTAGAAGCGATTAGGCAGCACGAAAATGAAATTGTTTGAGGTTCTGTACTGCTCGAATAATGTTACTGCAACTGTATTATCCA TGAACTGTAATAATTCAAAGTTTGGCAACAGGCCATGGTGATTGGTTCTACACAAAAAAAAAA] [-] EMBL BI306403 [ GAGAGATGATTGCAGGATCATAGTTTGTGTAGTTTGTACCTTATAATGGATGTTTCGACTTCATTTTTCTGCTAGAAGCGATTAGGCAGCCCGAAAATGAAATTGTTTGAGGTTCTGTACTGCTCGAATAATGTTACTGCAACTGTATTATCCA TGAACTGTAATAATTCAAAGTTTGG ] [+] EMBL BM419329 [ tccgCATAGTTTGTGTAGTTTGTACCTTATAATGGATGTTTCGACTTCATTTTTCTGCTAGAAGCGATTAGGCAGCACGAAAATGAAATTGTTTGAGGTTCTGTACTGCTCGAATAATGTTACTGCAACTGTATTATCCACTNCCCNGTAATAATTCAAAGTTTGGCAAaaaa ] consensusID : consensus_14063#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 791 fasta sequence [CTTGGTATGGGTTCCATCAATATACACCTCTCCTGGAATGTACCTTGTCAACCACCCTGTGAATTTGGGTCCCCAGCTAGCACTCTCAATTCTCCTTGCTGGAATATTGTGCATATATATAAACTATGACTGTGATCGTCAGCGCCAAGAATTCCGTCGGACAAATGGGAAATGCTCAATATGGGGCAAAGCTCCATCTAAGATTGTTGCTTCCTATCAGACTCCAAATGGAGAAACAAAAAGCAGTCTTCTCTTGACTTCTGGATGGTGGGGCTTGTCTCGTCATTTTCACTATGTTCCAGAGATTCTATCTGCTTTTTTCTGGACAGTTCCAGCTCTTTTTGATCATTTCCTGCCGTACTTCTATGTGATCTTTCTGACCATATTGCTGTTCGACCGAGCTAAAAGGGATGATGCCCGATGCTCATCAAAGTATGGCAAGTATTGGAAGATGTACTGCAACAAAGTACCGTGCAGGGTTATTCCTGGCATTTACTGAGGATTAGATTCGGGCTGATTGGTTTCAACCTTTTGAGTTTGCTGTATCCAACCCTGACACAGATGAGTCAACGATGCCGCCAAATCGTGATTTTTCTTGTTAGCTCGCTGATAGGAGAGATGATTGCAGGATCATAGTTTGTGTAGTTTGTACCTTATAATGGATGTTTCGACTTCATTTTTCTGCTAGAAGCGATTAGGCAGCACGAAAATGAAATTGTTTGAGGTTCTGTACTGCTCGAATAATGTTGCTGCAACTGTATTATCCATGAACTGTAATAATTCAAAGTTTG] [-] EMBL CB669944 [CTTGGTATGGGTTCCATCAATATACACCTCTCCTGGAATGTACCTTGTCAACCACCCTGTGAATTTGGGTCCCCAGCTAGCACTCTCAATTCTCCTTGCTGGAATATTGTGCATATATATAAACTATGACTGTGATCGTCAGCGCCAAGAATTCCGTCGGACAAATGGGAAATGCTCAATATGGGGCAAAGCTCCATCTAAGATTGTTGCTTCCTATCAGACTCCAAATGGAGAAACAAAAAGCAGTCTTCTCTTGACTTCTGGATGGTGGGGCTTGTCTCGTCATTTTCACTATGTTCCAGAGATTCTATCTGCTTTTTTCTGGACAGTTCCAGCTCTTTTTGATCATTTCCTGCCGTACTTCTATGTGATCTTTCTGACCATATTGCTGTTCGACCGAGCTAAAAGGGATGATGCCCGATGCTCATCAAAGTATGGCAAGTATTGGAAGATGTACTGCAACAAAGTACCGTGCAGGGTTATTCCTGGCATTTACTGAGGATTAGATTCGGGCTGATTGGTTTCAACCTTTTGAGTTTGCTGTATCCAACCCTGACACAGATGAGTCAACGATGCCGCCAAATCGTGATTTTTCTTGTTAGCTCGCTGATAGGAGAGATGATTGCAGGATCATAGTTTGTGTAGTTTGTACCTTATAATGGATGTTTCGACTTCATTTTTCTGCTAGAAGCGATTAGGCAGCACGAAAATGAAATTGTTTGAGGTTCTGTACTGCTCGAATAATGTTGCTGCAACTGTATTATCCATGAACTGTAATAATTCAAAGTTTG] consensusID : consensus_14063#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 742 fasta sequence [ACTCCTCCCCTCGCCTTCACCCTTCCCTGCCTCGGTCCACTCCTCTGGCCCCTTCGCCTCCAGCTACGGAACAACAAATACTACTACGCAAAAAAGTGCCCTAAGCTCGCAAGCAGCAGCAGCGACTGCGCCGAGGAGGAGGAGAGCGTCGAGCAGCTCGCTCCCCTCGCGCCTCTCGGATGCGCTCGCCCGAAAGCGCGTGGGCTTCTCCCTCCCACGATTCGCCCCATCCAAAAGCGTAGGATGGATCCAGCGCGATGAGGAGGAGGAGGAGGGGGAGGAGGTGGAGGAGCATCTTCGGCTTCGGCCTCTTCGAGGCCGCGCTGCAGCTTCTCCTCCCCGGGAAGCGCTTCGAGGGCCCCGTCTCCCCCTCGGGCAACGTGCCCGTCTACAAGGCAAATGGCTTACAAGCATATGCAGTGACCTTGATAACATACCTGAGCCTGTGGTGGTTTGGAATTTTTAACCCTGCAATAGTATACGATCACTTGGGGGAAATATACTCTGCTCTTGTATTTGGAAGCTTTGTGTTCTGTATTTTTCTGTACATAAAGGGTCATCTTGCTCCATCTTCATCTGATTCTGGATCCTCAGGGAATGTGATAATTGATTTCTACTGGGGAATGGAACTATATCCTCGCATTGGTAAGCACTTTGATATCAAAGTGTTCACAAACTGCCGTTTTGGGATGATGTCCTGGGCTGTTCTTGCTGTAACCTACTGCATAAAGCAGTATGAAAT] [+] EMBL CB669899 [ACTCCTCCCCTCGCCTTCACCCTTCCCTGCCTCGGTCCACTCCTCTGGCCCCTTCGCCTCCAGCTACGGAACAACAAATACTACTACGCAAAAAAGTGCCCTAAGCTCGCAAGCAGCAGCAGCGACTGCGCCGAGGAGGAGGAGAGCGTCGAGCAGCTCGCTCCCCTCGCGCCTCTCGGATGCGCTCGCCCGAAAGCGCGTGGGCTTCTCCCTCCCACGATTCGCCCCATCCAAAAGCGTAGGATGGATCCAGCGCGATGAGGAGGAGGAGGAGGGGGAGGAGGTGGAGGAGCATCTTCGGCTTCGGCCTCTTCGAGGCCGCGCTGCAGCTTCTCCTCCCCGGGAAGCGCTTCGAGGGCCCCGTCTCCCCCTCGGGCAACGTGCCCGTCTACAAGGCAAATGGCTTACAAGCATATGCAGTGACCTTGATAACATACCTGAGCCTGTGGTGGTTTGGAATTTTTAACCCTGCAATAGTATACGATCACTTGGGGGAAATATACTCTGCTCTTGTATTTGGAAGCTTTGTGTTCTGTATTTTTCTGTACATAAAGGGTCATCTTGCTCCATCTTCATCTGATTCTGGATCCTCAGGGAATGTGATAATTGATTTCTACTGGGGAATGGAACTATATCCTCGCATTGGTAAGCACTTTGATATCAAAGTGTTCACAAACTGCCGTTTTGGGATGATGTCCTGGGCTGTTCTTGCTGTAACCTACTGCATAAAGCAGTATGAAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14063#0 CCGTCTGTCTCTGCCCCACCCACGCATACTAGGAAGGCAGGGGAGACGAGGAGCCAGAGC 60 consensus_14063#1 ------------------------------------------------------------ consensus_14063#2 ------------------------------------------------------------ consensus_14063#0 CAAGTCAAGCCGCTTCCTCTCCTCTCGTCTCGGCGCCTCACTCGATCTCCTTCCTCCACT 120 consensus_14063#1 ------------------------------------------------------------ consensus_14063#2 ------------------------------------------------------------ consensus_14063#0 GTCGCTCAGATCGACGCGGGCCATGGCCAAGCCTAGGGCCTCCGCCGCCGCGGCGAAGGC 180 consensus_14063#1 ------------------------------------------------------------ consensus_14063#2 ------------------------------------------------------------ consensus_14063#0 GCCAGCCTCCACGCCGCCCAAGACGGTGCACTCGGCGCTCGTCACCTACGCCTCCATGCT 240 consensus_14063#1 ------------------------------------------------------------ consensus_14063#2 ------------------------------------------------------------ consensus_14063#0 CTCCCTCCTCTCCCTCTGCCCGCCCTTCGTCATCCTCCTGTGGTACACGATGGTGCACGC 300 consensus_14063#1 ------------------------------------------------------------ consensus_14063#2 ------------------------------------------------------------ consensus_14063#0 GGACGGATCCGTGGTGCGGGCGTACGAGCACCTCCGCGAGCACGGGGTGCTGGAGGGGCT 360 consensus_14063#1 ------------------------------------------------------------ consensus_14063#2 ------------------------------------------------------------ consensus_14063#0 CAAGGCCATCTGGCCCATGCCAACCATGGCCGCCTGGAAGATCATCTTCGGCTTCGGCCT 420 consensus_14063#1 ------------------------------------------------------------ consensus_14063#2 ------------------------------------------------------------ consensus_14063#0 CTTCGAGGCCGCGCTGCAGCTTCTCCTCCCCGGGAAGCGCTTCGAGGGCCCCGTCTCCCC 480 consensus_14063#1 ------------------------------------------------------------ consensus_14063#2 ------------------------------------------------------------ consensus_14063#0 CTCGGGCAACGTGCCCGTCTACAAGGCAAATGGCTTACAAGCATATGCAGTGACCTTGAT 540 consensus_14063#1 ------------------------------------------------------------ consensus_14063#2 ------------------------------------------------------------ consensus_14063#0 AACATACCTGAGCCTGTGGTGGTTTGGAATTTTTAACCCTGCAATAGTATACGATCACTT 600 consensus_14063#1 ------------------------------------------------------------ consensus_14063#2 ------------------------------------------------------------ consensus_14063#0 GGGGGAAATATACTCTGCTCTTGTATTTGGAAGCTTTGTGTTCTGTATTTTTCTGTACAT 660 consensus_14063#1 ------------------------------------------------------------ consensus_14063#2 ------------------------------------------------------------ consensus_14063#0 AAAGGGTCATCTTGCTCCATCTTCATCTGATTCTGGATCCTCAGGGAATGTGATAATTGA 720 consensus_14063#1 ------------------------------------------------------------ consensus_14063#2 ------------------------------------------------------------ consensus_14063#0 TTTCTACTGGGGAATGGAACTATATCCTCGCATTGGTAAGCACTTTGATATCAAAGTGTT 780 consensus_14063#1 ------------------------------------------------------------ consensus_14063#2 ------------------------------------------------------------ consensus_14063#0 CACAAACTGCCGTTTTGGGATGATGTCCTGGGCTGTTCTTGCTGTAACCTACTGCATAAA 840 consensus_14063#1 ------------------------------------------------------------ consensus_14063#2 ------------------------------------------------------------ consensus_14063#0 GCAGTATGAAATGAATGGCCGAGTTGCAGATTCAATGCTTGTGAATACTGCATTGATGTT 900 consensus_14063#1 ------------------------------------------------------------ consensus_14063#2 ------------------------------------------------------------ consensus_14063#0 GATCTATGTCACCAAGTTCTTCTGGTGGGAATCTGGATACTGGTGCACTATGGACATTGC 960 consensus_14063#1 ------------------------------------------------------------ consensus_14063#2 ------------------------------------------------------------ consensus_14063#0 TCATGATAGAGCTGGTTTCTACATTTGCTGGGGATGCTTGGTATGGGTTCCATCAATATA 1020 consensus_14063#1 ------------------------------------CTTGGTATGGGTTCCATCAATATA 24 consensus_14063#2 ------------------------------------------------------ACTCCT 6 * * consensus_14063#0 CACCTCTCCTGGAATGTACCTTGTCAACCACCCTGTGAATTTGGGTCCCCAGCTAGCACT 1080 consensus_14063#1 CACCTCTCCTGGAATGTACCTTGTCAACCACCCTGTGAATTTGGGTCCCCAGCTAGCACT 84 consensus_14063#2 CCCCTCGCCTTCACCCTTCCCTGCC--TCGGTCCACTCCTCTGGCCCCTTCGCCTCCAGC 64 * **** *** * * ** ** * * * * *** ** ** ** consensus_14063#0 CTCAATTCTCCTTGCTGGAATATTGTGCATATATATAAACTATGACTGTGATCGTCAGCG 1140 consensus_14063#1 CTCAATTCTCCTTGCTGGAATATTGTGCATATATATAAACTATGACTGTGATCGTCAGCG 144 consensus_14063#2 TACGGAACAACAAAT---ACTACTACGCAAAAAAGTGCCCTAAGCTCGCAAGCAGCAGCA 121 * * * * ** * *** * * * *** * * * * **** consensus_14063#0 CCAA--ATTCCGTCGGACAAATGGGAAATGCTCAATATGGGGCAAAGCTC---CATCTAA 1195 consensus_14063#1 CCAAGAATTCCGTCGGACAAATGGGAAATGCTCAATATGGGGCAAAGCTC---CATCTAA 201 consensus_14063#2 GCGA---CTGCGCCGAGGAGGAGGAGAGCGTCGAGCAGCTCGCTCCCCTCGCGCCTCTCG 178 * * * ** ** * ** * * * * ** *** * *** consensus_14063#0 GATTGTTGCTTCCTATCAGACTACAAATGGAGAAACAAAAAGCAGTCTTCTCTTGACTTC 1255 consensus_14063#1 GATTGTTGCTTCCTATCAGACTCCAAATGGAGAAACAAAAAGCAGTCTTCTCTTGACTTC 261 consensus_14063#2 GATGCGCTCGCCCGAAAGCGCGTGGGCTTCTCCCTCCCACGATTCGCCCCATCCAAAAGC 238 *** * ** * * * * * * * * * consensus_14063#0 TGGATGGTGGGGCTTGTCTCGTCATTTTCACTATGTTCCAGAGATTCTATCTGCTTTTTT 1315 consensus_14063#1 TGGATGGTGGGGCTTGTCTCGTCATTTTCACTATGTTCCAGAGATTCTATCTGCTTTTTT 321 consensus_14063#2 -GTAGGATGGATCCAGCGCGATGAGGAGGAGGAGGAGGGGGAGGAGGTGGAGGAGCATCT 297 * * * *** * * * * * * * *** * * * * consensus_14063#0 CTGGACAGTTCCAGCTCTTTTTGATCAT-TTCCTGCCGTACTTCTATGTGAT-CTTTCTG 1373 consensus_14063#1 CTGGACAGTTCCAGCTCTTTTTGATCAT-TTCCTGCCGTACTTCTATGTGAT-CTTTCTG 379 consensus_14063#2 TCGGC---TTCGGCCTCTTCGAGGCCGCGCTGCAGCTTCTCCTCCCCGGGAAGCGCTTCG 354 ** *** ***** * * * * ** * ** * ** * * * consensus_14063#0 ACCATATTGCTGTTCGACCGAGCTAAAAGGGATGATGACCGATGCTCATCAAAGTATGGC 1433 consensus_14063#1 ACCATATTGCTGTTCGACCGAGCTAAAAGGGATGATGCCCGATGCTCATCAAAGTATGGC 439 consensus_14063#2 AGGGCCCCGTCTCCCCCTCGGGCAAC--------GTGCCCG----TCTACAAGGCAAATG 402 * * * ** ** * ** *** ** *** * * consensus_14063#0 AAGTATTGGAAGATGTACTGCAACAAAGTACCGTGCAGGGTTATTCCTGGCATTTACTGA 1493 consensus_14063#1 AAGTATTGGAAGATGTACTGCAACAAAGTACCGTGCAGGGTTATTCCTGGCATTTACTGA 499 consensus_14063#2 GCTTACAAGCATATGCAGTG-ACCTTGATAACATAC----CTGAGCCTGTGGTGGTTTGG 457 ** * * *** * ** * * ** * * * * **** * ** consensus_14063#0 GGTTGTTGACCATGTTCAACAACTTCTCGGGATAAAACTCAGCCATGTTGTGAATTCCTT 1553 consensus_14063#1 GG---------------------------------------------------------- 501 consensus_14063#2 AAT--------------------------------------------------------- 460 consensus_14063#0 TCTCTGGGACGATCTACTGCTGTTTGTGTAATATGTCATTAGCTTGATGTATGCAGGATT 1613 consensus_14063#1 ---------------------------------------------------------ATT 504 consensus_14063#2 ---------------------------------------------------------TTT 463 ** consensus_14063#0 AGATTCGGGCTGATTGGTTTCAACCTTTTGAGTTTGCTGTATCCAACCCTGACACAGATG 1673 consensus_14063#1 AGATTCGGGCTGATTGGTTTCAACCTTTTGAGTTTGCTGTATCCAACCCTGACACAGATG 564 consensus_14063#2 TAACCCTG--CAATAGTATACGATCACTTGGGGGAAATATACTCTGCTCTTGTATTTGGA 521 * * * ** * * * * * *** * * ** * * ** * consensus_14063#0 AGTCAACGATGCCGCCAAATCGTG-ATTTTTCTTGTTAGCTCGCTGATAGGAGAGATGAT 1732 consensus_14063#1 AGTCAACGATGCCGCCAAATCGTG-ATTTTTCTTGTTAGCTCGCTGATAGGAGAGATGAT 623 consensus_14063#2 AGCTTTGTGTTCTGTATTTTTCTGTACATAAAGGGTCATCTTGCTCCATCTTCATCTGAT 581 ** * * * * ** * * ** * ** *** * **** consensus_14063#0 TGCAGGATCATAGTTTGTGTAGTTTGTACCTTATAATGGATGTTTCGACTTCATTTTTCT 1792 consensus_14063#1 TGCAGGATCATAGTTTGTGTAGTTTGTACCTTATAATGGATGTTTCGACTTCATTTTTCT 683 consensus_14063#2 TCTGGATCCTCAGGGAATGTGATAATTGATTTCTACTGGGGAATGGAACTATATCCTCGC 641 * * * ** *** * * ** ** *** * *** ** * consensus_14063#0 GCTAG-AAGCGATTAGGCAGCACGAAAATGAAATTGTTTGAGGTTCTGTACTGCTCGAAT 1851 consensus_14063#1 GCTAG-AAGCGATTAGGCAGCACGAAAATGAAATTGTTTGAGGTTCTGTACTGCTCGAAT 742 consensus_14063#2 ATTGGTAAGCACTTTGATATCAAAGTGTTCACA--AACTGCCGTTTTGGGATGATGTCCT 699 * * **** ** * * ** * * * ** *** ** ** * * consensus_14063#0 AATGTTACTGCAACTGTATTATCCATGAACTGTAATAATTCAAAGTTTGGCAACAGGCAT 1911 consensus_14063#1 AATGTTGCTGCAACTGTATTATCCATGAACTGTAATAATTCAAAGTTTG----------- 791 consensus_14063#2 GG-GCTGTTCTTGCTGTA--ACCTACTGCATAAAGCAGTATGAAAT-------------- 742 * * * ***** * * * * * * * ** * consensus_14063#0 GGTGATTGGTTCTAAAAAAAAAAAAAA 1938 consensus_14063#1 --------------------------- consensus_14063#2 --------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||