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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14142#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 2597 fasta sequence
[TCTCTCTCGCCGTGCATCTCTTTCCCCTACCATCCCACGCCTCCCTCTCCCCCGATCCATCCACCGGCAAGCGGCCGCTTCCGCCACCGCGTCACCAAGGTTAGCTCACACATGTTCTAGGCTATTGGAGGATCTTTGCTTCAGATGGCTGGGGCTCTGCATATTTCTTGTTCTCCGGCTCCATTATTGTGGGCTCTTCTGTTGCTGACTGTGTCACCAGGCAATGCATTCTACTTGCCTGGCAGCTACATGCACACATACTCCCAAGGTGAGGAAATATGGGCCAAGGTGAACTCCCTTACGTCCATCGAGACAGAGATGCCATTCAGCTACTACAGCCTGCCATACTGCCGGCCCCAAGGCGGCATTAAGAAGAGCGCTGAGAACCTCGGTGAACTTCTCATGGGTGATCAGATAGACAATTCACCCTACAGGTTCCGTGTGAATGTTAACGAGTCCCTCTACCTCTGCACCACAAAAGGGCTTAATGAGAATGATGCAAAGCTCCTCAAGCAGCGCACACGTGACCTCTACCAGGTTAACATGATGCTGGATAATTTGCCTGTCATGCGTTTTACTGAGCAGAATGGTATCACTGTACAGTGGACTGGCTTTCCTGTTGGTTACACTCCAGCTGGAATCTCGGAAGATTACATCATTAACCATTTAAAGTTTAAGGTGTTGGTCCATGAGTACGAGGGCAGGAATGTGGAGATCATTGGCACTGGGGAAGAAGGATCTGGTGTCATCTCGGAATTTGACAAGAAGGGGATGTCTGGGTATCAGATTGTTGGTTTTGAGGTTGTGCCTTGCAGTGTGAAGCGTGATGCCGAGGCTTTCTCCAAGAGTAACATGTATGACAGCATTGAACCTGTGAGCTGCCCAATGGAGCTTCAGAAGTCTCAGGTGATCAGGCAACAGGAGAGGATCACTTTCACTTATGACGTTGAATTTGTGAAGAGTGACATCAAGTGGCCATCTAGGTGGGATGCTTATCTGAAGATGGAGGCAGGTGCTAAAGTCCACTGGTTCTCCATTATGAACTCCCTAATGGTGATCCTGTTCTTGGCTGGTATTGTCTTTGTTATATTCTTGAGAACTGTCAGGAGGGACTTGACGAGGTATGAAGAACTCGACAAGGAGGCGCAGGCACAGATGAATGAGGAGCTATCTGGGTGGAAGCTTGTTGTGGGAGATGTATTCAGAGAGCCAACTTGCCCTAAGCTGCTGTGTGTCATGATTGGTGATGGTGTTCAGATTTTGGGCATGGCAATAGTAACAATTATTTTCTCCACACTTGGGTTCATGTCTCCAGCATCAAGAGGAATGCTTCTCACTGGGATGATCATTCTCTATCTTTTCCTTGGTATTGCAGCTGGATATGTCAGTGTGCGGCTGTGGAAGACTATTAAGGGCACATCTGAAGGGTGGAGATCAGTGTCCTGGTTAACTGCCTGCTTCTTCCCTGGTGTCTTGTTCATGGTCCTTACTGTCTTAAACTTCGTCTTATGGGGAAGCAAGAGCACTGGAGCTTTACCTATCTCACTATTTTTCGCCCTTTTAGCTATGTGGTTCTGCATATCTGTGCCGTTAACTCTTGTTGGTGGCTTTGTTGGTACAAGATCAGCGCAGATAGAGTTTCCTGTCCGTACCAACCAGATCCCGAGAGAGATCCCTGCACGGAAATACCCATCATGGCTTCTTGTCCTTGGTGCAGGAACACTGCCATTCGGAACCCTGTTCATTGAGCTCTTCTTTATTCTGTCAAGCATTTGGCTTGGAAGGTTCTACTATGTGTTTGGCTTTCTGCTAATTGTCCTTGTGCTGCTTGTCATTGTCTGCGCTGAGGTCTCTGTTGTTCTGACATACATGAACCTCTGCGTGGAGGACTGGAGGTGGTGGTGGAAAGCTTTCTTTGCCTCAGGATCTGTTGCAATCTATGTGTTCCTCTACTCCATCAACTACTTGGTATTTGACCTCAGAAGCCTGAGCGGGCCTGTCTCTGCCATGCTTTACCTTGGTTACTCATTCCTCATGGCATTTGCAATCATGCTGGCCACTGGAACCATTGGATTTTTGACATCATTCTCCTTCGTGCACTATCTGTTCTCATCCGTGAAGATCGATTGATGAATGAAGATTACGATACTCTCTGGCCCTCCGGATTCGTGTTCCCTGTGTGTGGGTGTGAACTTTCACCATGAGATGCACTGTTTATTGTTTGAGGAGATTTTGATCAACTGAAGATGTTTTTAAGATGAAAGGTATTCTCCACCTAGCGGACGTAGTCATTTTTTCCTCTATTCCAACCGTTGTTGTGAGTTGTAACTGCTAGAGTTAATTAATCTAGATACATGCAACCCGGCTTTGCAAGGGTTTAAGAGCAACGCTATGTTGATTATCGTGATTGGCAGATAGAATTCTGTCATATTCAAGTGAAAATGTAGCCACCTGCCGTTCAAAATTCTGATGTGTGACCTGAAGATTAGCTGTGTCAGCTCTTGACAAAACTGTAATACGATTGCAAGTACCTGTTTCCTTGGCATTTTTTTATCATGTCCAGTACAAATTTATATTTCCTTATCTGTAGTGGGATA]
[+] EMBL AK102663 [TCTCTCTCGCCGTGCATCTCTTTCCCCTACCATCCCACGCCTCCCTCTCCCCCGATCCATCCACCGGCAAGCGGCCGCTTCCGCCACCGCGTCACCAAGGTTAGCTCACACATGTTCTAGGCTATTGGAGGATCTTTGCTTCAGATGGCTGGGGCTCTGCATATTTCTTGTTCTCCGGCTCCATTATTGTGGGCTCTTCTGTTGCTGACTGTGTCACCAGGCAATGCATTCTACTTGCCTGGCAGCTACATGCACACATACTCCCAAGGTGAGGAAATATGGGCCAAGGTGAACTCCCTTACGTCCATCGAGACAGAGATGCCATTCAGCTACTACAGCCTGCCATACTGCCGGCCCCAAGGCGGCATTAAGAAGAGCGCTGAGAACCTCGGTGAACTTCTCATGGGTGATCAGATAGACAATTCACCCTACAGGTTCCGTGTGAATGTTAACGAGTCCCTCTACCTCTGCACCACAAAAGGGCTTAATGAGAATGATGCAAAGCTCCTCAAGCAGCGCACACGTGACCTCTGCCAGGTTAACATGATGCTGGATAATTTGCCTGTCATGCGTTTTACTGAGCAGAATGGTATCACTGTACAGTGGACTGGCTTTCCTGTTGGTTACACTCCAGCTGGAATCTCGGAAGATTACATCATTAACCATTTAAAGTTTAAGGTGTTGGTCCATGAGTACGAGGGCAGGAATGTGGAGATCATTGGCACTGGGGAAGAAGGATCTGGTGTCATCTCGGAATTTGACAAGAAGGGGATGTCTGGGTATCAGATTGTTGGTTTTGAGGTTGTGCCTTGCAGTGTGAAGCGTGATGCCGAGGCTTTCTCCAAGAGTAACATGTATGACAGCATTGAACCTGTGAGCTGCCCAATGGAGCTTCAGAAGTCTCAGGTGATCAGGCAACAGGAGAGGATCACTTTCACTTATGACGTTGAATTTGTGAAGAGTGACATCAAGTGGCCATCTAGGTGGGATGCTTATCTGAAGATGGAGGCAGGTGCTAAAGTCCACTGGTTCTCCATTATGAACTCCCTAATGGTGATCCTGTTCTTGGCTGGTATTGTCTTTGTTATATTCTTGAGAACTGTCAGGAGGGACTTGACGAGGTATGAAGAACTCGACAAGGAGGCGCAGGCACAGATGAATGAGGAGCTATCTGGGTGGAAGCTTGTTGTGGGAGATGTATTCAGAGAGCCAACTTGCCCTAAGCTGCTGTGTGTCATGATTGGTGATGGTGTTCAGATTTTGGGCATGGCAATAGTAACAATTATTTTCTCCACACTTGGGTTCATGTCTCCAGCATCAAGAGGAATGCTTCTCACTGGGATGATCATTCTCTATCTTTTCCTTGGTATTGCAGCTGGATATGTCAGTGTGCGGCTGTGGAAGACTATTAAGGGCACATCTGAAGGGTGGAGATCAGTGTCCTGGTTAACTGCCTGCTTCTTCCCTGGTGTCTTGTTCATGGTCCTTACTGTCTTAAACTTCGTCTTATGGGGAAGCAAGAGCACTGGAGCTTTACCTATCTCACTATTTTTCGCCCTTTTAGCTATGTGGTTCTGCATATCTGTGCCGTTAACTCTTGTTGGTGGCTTTGTTGGTACAAGATCAGCGCAGATAGAGTTTCCTGTCCGTACCAACCAGATCCCGAGAGAGATCCCTGCACGGAAATACCCATCATGGCTTCTTGTCCTTGGTGCAGGAACACTGCCATTCGGAACCCTGTTCATTGAGCTCTTCTTTATTCTGTCAAGCATTTGGCTTGGAAGGTTCTACTATGTGTTTGGCTTTCTGCTAATTGTCCTTGTGCTGCTTGTCATTGTCTGCGCTGAGGTCTCTGTTGTTCTGACATACATGAACCTCTGCGTGGAGGACTGGAGGTGGTGGTGGAAAGCTTTCTTTGCCTCAGGATCTGTTGCAATCTATGTGTTCCTCTACTCCATCAACTACTTGGTATTTGACCTCAGAAGCCTGAGCGGGCCTGTCTCTGCCATGCTTTACCTTGGTTACTCATTCCTCATGGCATTTGCAATCATGCTGGCCACTGGAACCATTGGATTTTTGACATCATTCTCCTTCGTGCACTATCTGTTCTCATCCGTGAAGATCGATTGATGAATGAAGATTACGATACTCTCTGGCCCTCCGGATTCGTGTTCCCTGTGTGTGGGTGTGAACTTTCACCATGAGATGCACTGTTTATTGTTTGAGGAGATTTTGATCAACTGAAGATGTTTTTAAGATGAAAGGTATTCTCCACCTAGCGGACGTAGTCATTTTTTCCTCTATTCCAACCGTTGTTGTGAGTTGTAACTGCTAGAGTTAATTAATCTAGATACATGCAACCCGGCTTTGCAAGGGTTTAAGAGCAACGCTATGTTGATTATCGTGATTGGCAGATAGAATTCTGTCATATTCAAGTGAAAATGTAGCCACCTGCCGTTCAAAATTCTGATGTGTGACCTGAAGATTAGCTGTGTCAGCTCTTGACAAAACTGTAATACGATTGCAAGTACCTGTTTCCTTGGCATTTTTTTATCATGTCCAGTACAAATTTATATTTCCTTATCTGTAGTGGGATA]
[+] EMBL CB627641 [ CCTCTCCCCCGATCCATCCACCGGCAAGCGGCCGCTTCCGCCACCGCGTCACCAAGGTTAGCTCACACATGTTCTAGGCTATTGGAGGATCTTTGCTTCAGATGGCTGGGGCTCTGCATATTTCTTGTTCTCCGGCTCCATTATTGTGGGCTCTTCTGTTGCTGACTGTGTCACCAGGCAATGCATTCTACTTGCCTGGCAGCTACATGCACACATACTCCCAAGGTGAGGAAATATGGGCCAAGGTGAACTCCCTTACGTCCATCGAGACAGAGATGCCATTCAGCTACTACAGCCTGCCATACTGCCGGCCCCAAGGCGGCATTAAGAAGAGCGCTGAGAACCTCGGTGAACTTCTCATGGGTGATCAGATAGACAATTCACCCTACAGGTTCCGTGTGAATGTTAACGAGTCCCTCTACCTCTGCACCACAAAAGGGCTTAATGAGAATGATGCAAAGCTCCTCAAGCAGCGCACACGTGACCTCTACCAGGTTAACATGATGCTGGATAATTTGCCTGTCATGCGTTTTACTGAGCAGAATGGTATCACTGTACAGTGGACTGGCTTTCCTGTTGGTTACACTCCAGCTGGAATCTCGGAAGATTACATCATTAACCATTTAAAGTTTAAGGTGTTGGTCCATGAGTACGAGGGCAGGAATGTGGAGATCATTGGCACTGGGGAAGAAGGATCTGGTGTCATCTCGGAATTTGACAAGAAGGGGATGTCTGGGTATCAGATTGTTGGTTTTGAGGTTGTGCCTTGCAGTGTGAAGCGTGATGCCGAGGCTTTCTCCAAGAGT ACATG ]
[+] EMBL CB637400 [ CTCTCCCCCGATCCATCCACCGGCAAGCGGCCGCTTCCGCCACCGCGTCACCAAGGTTAGCTCACACATGTTCTAGGCTATTGGAGGATCTTTGCTTCAGATGGCTGGGGCTCTGCATATTTCTTGTTCTCCGGCTCCATTATTGTGGGCTCTTCTGTTGCTGACTGTGTCACCAGGCAATGCATTCTACTTGCCTGGCAGCTACATGCACACATACTCCCAAGGTGAGGAAATATGGGCCAAGGTGAACTCCCTTACGTCCATCGAGACAGAGATGCCATTCAGCTACTACAGCCTGCCATACTGCCGGCCCCAAGGCGGCATTAAGAAGAGCGCTGAGAACCTCGGTGAACTTCTCATGGGTGATCAGATAGACAATTCACCCTACAGGTTCCGTGTGAATGTTAACGAGTCCCTCTACCTCTGCACCACAAAAGGGCTTAATGAGAATGATGCAAAGCTCCTCAAGCAGCGCACACGTGACCTCTACCAGGTTAACATGATGCTGGATAATTTGCCTGTCATGCGTTTTACTGAGCAGAATGGTATCACTGTACAGTGGACT ]
[+] EMBL CB635782 [ ATCCATCCACCGGAAAGCGGCCGCTTCCGCCACCGCGTCACCAAGGTTAGCTCCCACATGTTCTAGGCTATTGGAGGATCTTTGCTTCAGATGGCTGGGGCTCTGCATATTTCTTGTTCTCCGGCTCCATTATTGTGGGCTCTTCTGTTGCTGACTGTGTCACCAGGCAATGCATTCTACTTGACTGGCAGCTACATGCACACATACTCCCAAGGTGAGGAAATATGGGCCAAGGTGAACTCCCTTACGTCCATCGAGACAGAGATGCCATTCTGCTACTACAGCCTGCCATACTGCCGGCCCCTAGGCGGCATTAAGAAGAGCGCTGAGAACCTCGGTGAACTTCTCATGGGTGATCAGATAGACAATTCACCCTACAGGTTCCGTGTGAATGTTAACGAGTCCCTCTACCTCTGCACCACAAAAGGGCTTAATGAGAATGATGCAAAGCTCCTCAAGCAGCGCACACGTGACCTCTACCAGGTTAACATGATGCTGGATAATTTGCCTGTCATGCGTTTTACTGAGCAGAATGGTATCACTGTACAGTGGACTGGCTTTCCTGTTGGTTACACTCCAACTGGAATCTCGGAAGATTA ]
[-] EMBL CA882793 [ ATCCATCCACCGGCAAGCGGCCGCTTCCGCCACCGCGTCACCAAGGTTAGCTCACACATGTTCTAGGCTATTGGAGGATCTTTGCTTCAGATGGCTGGGGCTCTGCATATTTCTTGTTCTCCGGCTCCATTATTGTGGGCTCTTCTGTTGCTGACTGTGTCACCAGGCAATGCATTCTACTTGCCTGGCAGCTACATGCACACATACTCCCAAGGTGAGGAAATATGGGCCAAGGTGAACTCCCTTACGTCCATCGAGACAGAGATGCCATTCAGCTACTACAGCCTGCCATACTGCCGGCCCCAAGGCGGCATTAAGAAGAGCGCTGAGAACCTCGGTGAACTTCTCATGGGTGATCAGATAGGCAATTCACCCTACAGGTTCCGTGTGAATGTTAACGAGTCCCTCTACCTCTGCACCACAAAAGGGCTTAATGAGAATGATGCAAAGCTCCTCAAGCAGCGCACACGTGACCTCTACCAGGTTAACATGATGCTGGATAATTTGCCTGTCATGCGTTTTACTGAGCAGAATGG ]
[+] EMBL CB629534 [ GACAGCCTTGAACCTGTGAGCTGCCCAATGGAGCTTCAGAAGTCTCAGGTGATCAGGCAACAGGAGAGGATCACTTTCACTTATGACGTTGAATTTGTGAAGAGTGACATCAAGTGGCCATCTAGGTGGGATGCTTATCTGAAGATGGAGGCAGGTGCTAAAGTCCACTGGTTCTCCATTATGAACTCCCTAATGGTGATCCTGTTCTTGGCTGGTATTGTCTTTGTTATATTCTTGAGAACTGTCAGGAGGGACTTGACGAGGTATGAAGAACTCGACAAGGAGGCGCAGGCACAGATGAATGAGGAGCTATCTGGGTGGAAGCTTGTTGTGGGAGATGTATTCAGAGAGCCAACTTGCCCTAAGCTGCTGTGTGTCATGATTGGTGATGGTGTTCAGATTTTGGGCATGGCAATAGTAACAATTATTTTCTCCACACTTGGGTTCATGTCTCCAGCATCAAGAGGAATGCTTCTCACTGGGATGATCATTCTCTATCTTTTCCTTGGTATTGCAGCTGGATATGTCAGTGTGCGGCTGTGGAAGACTATTAAGGGCACATCTGAAGGGTGGAGATCAGTGTCCTGGTTAACTGCCTGCTTCTTCCCTGGTGTCTTGTTCATGGTCCTTACTGTCTTAAACTTCGTCTTATGGGGAAGCAAGAGCACTGGAGCTTTACCTATCTCACTATTTTTCGCCCTTTTAGCTATGTGGTTCTGCAT ]
[+] EMBL CA999369 [ GATCAGTGTCCTGGTTAACTGCCTGCTTCTTCCCTGGTGTCTTGTTCATGGTCCTTACTGTCTTAAACTTCGTCTTATGGGGAAGCAAGAGCACTGGAGCTTTACCTATCTCACTATTTTTCGCCCTTTTAGCTATGTGGTTCTGCATATCTGTGCCGTTAACTCTTGTTGGTGGCTTTGTTGGTACAAGATCAGCGCAGATAGAGTTTCCTGTCCGTACCAACCAGATCCCGAGAGAGATCCCTGCACGGAAATACCCATCATGGCTTCTTGTCCTTGGTGCAGGAACACTGCCATTCGGAACCCTGTTCATTGAGCTCTTCTTTATTCTGTCAAGCATTTGGCTTGGAAGGTTCTACTATGTGTTTGGCTTTCTGCTAATTGTCCTTGTGCTGCTTGTCATTGTCTGCGCTGAGGTCTCTGTTGTTCTGACATACATGAACCTCTGCGTGGAGGACTGGAGGTGGTGGTGGAAAGCTTTCTTTGCCTCAGGATCTGTTGCAATCTATGTGTTCCTCTACTCCATCAACTACTTGGTATTTGACCTCAGAAGCCTGAGCGGGCCTGTCTCTGCCATGCTTTACCTTGGTTACTCAT ]
[+] EMBL CB000711 [ GATCAGTGTCCTGGTTAACTGCCTGCTTCTTCCCTGGTGTCTTGTTCATGGTCCTTACTGTCTTAAACTTCGTCTTATGGGGAAGCAAGAGCACTGGAGCTTTACCTATCTCACTATTTTTCGCCCTTTTAGCTATGTGGTTCTGCATATCTGTGCCGTTAACTCTTGTTGGTGGCTTTGTTGGTACAAGATCAGCGCAGATAGAGTTTCCTGTCCGTACCAACCAGATCCCGAGAGAGATCCCTGCACGGAAATACCCATCATGGCTTCTTGTCCTTGGTGCAGGAACACTGCCATTCGGAACCCTGTTCATTGAGCTCTTCTTTATTCTGTCAAGCATTTGGCTTGGAAGGTTCTACTATGTGTTTGGCTTTCTGCTAATTGTCCTTGTGCTGCTTGTCATTGTCTGCGCTGAGGTCTCTGTTGTTCTGACATACATGAACCTCTGCGTGGAGGACTGGAGGTGGTGGTGGAAAGCTTTCTTTGCCTCAGGATCTGTTGCAATCTATGTGTTCCTCTACTCCATCAACTACTTGGTATTTGACCTCAGAAGCCTGAGCGGGCCTGTCTCTGCCATGCTTTACCTTGGTTACTCATTCCTCATGGCATTTGCAATCATGCTGGCCACTGGAACCATTGGATTTTTGACATCATTCTCCTTCGTGCACTATCTG ]
[+] EMBL CB000712 [ GATCAGTGTCCTGGTTAACTGCCTGCTTCTTCCCTGGTGTCTTGTTCATGGTCCTTACTGTCTTAAACTTCGTCTTATGGGGAAGCAAGAGCACTGGAGCTTTACCTATCTCACTATTTTTCGCCCTTTTAGCTATGTGGTTCTGCATATCTGTGCCGTTAACTCTTGTTGGTGGCTTTGTTGGTACAAGATCAGCGCAGATAGAGTTTCCTGTCCGTACCAACCAGATCCCGAGAGAGATCCCTGCACGGAAATACCCATCATGGCTTCTTGTCCTTGGTGCAAGAACACTGCCATTCCGAACCCTGTTCATTGAGCTCTTCTTTATTCTGGCAAGCATTTGGCTTGGAAGGCTCTACTATGTGCTTGGCTTTCTGCTAATTGTCCTTGTGCTGCTTGTCAT ]
[-] EMBL CB629535 [ CATGGCTTCTTGTCCTTGGTGCAGGAACACTGCCATTCGGAACCCTGTTCATTGAGCTCTTCTTTATTCTGTCAAGCATTTGGCTTGGAAGGTTCTACTATGTGTTTGGCTTTCTGCTAATTGTCCTTGTGCTGCTTGTCATTGTCTGCGCTGAGGTCTCTGTTGTTCTGACATACATGAACCTCTGCGTGGAGGACTGGAGGTGGTGGTGGAAAGCTTTCTTTGCCTCAGGATCTGTTGCAATCTATGTGTTCCTCTACTCCATCAACTACTTGGTATTTGACCTCAGAAGCCTGAGCGGGCCTGTCTCTGCCATGCTTTACCTTGGTTACTCATTCCTCATGGCATTTGCAATCATGCTGGCCACTGGAACCATTGGATTTTTGACATCATTCTCCTTCGTGCACTATCTGTTCTCATCCGTGAAGATCGATTGATGAATGAAGATTACGATACTCTCTGGCCCTCCGGATTCGTGTTCCCTGTGTGTGGGTGTGAACTTTCACCATGAGATGCACTGTTTATTGTTTGAGGAGATTTTGATCAACTGAAGATGTTTTTAAGATGAAAGGTATTCTCCACCTAGCGGACGTAGTCATTTTTTCCTCTATTCCAACCGTTGTTGTGAGTTGTAACTGCTAGAGTTAATTAATCTAGATACATGCAACCCGGCTTTGCAAGGGTTTAAGAGCAACGCTATGTTGATTATCGTGATTGGCAGATAGAATTCTGTCAGATTCAAGTGAAAATGTAGCCACCTGCCGTTCAAAAaaaagga ]
[+] EMBL CF331976 [ TGAGCGGGCCTGTCTCTGCCATGCTTTACCTTGGTTACTCATTCCTCATGGCATTTGCAATCATGCTGGCCACTGGAACCATTGGATTTTTGACATCATTCTCCTTCGTGCACTATCTGTTCTCATCCGTGAAGATCTATTGATGAATGAAGATTACGATACTCTCTGGCCCTCCGGATTCGTGTTCCCTGTGTGTGGGTGTGAACTTTCACCATGAGATGCACTGTTTACTGTTTGAGGAGATTTTGATCAACTGAAGATGTTTTTAAGATGAAAGGTATTCTCCACCTAGCGGACGTAGTCATCTTTTCCTCTATTCCAACCGTTGTTGTGAGTTGTAACTGCTAGAGTTAATTAATCTAGATACATGCAACCCGGCTTTGCAAGGGTTTAAGAGCAACGCTATGTTGATTATCGTGATTGGCAGATAGAATTCTGTCATATTCAAGTGAAAATGTAGCCACCTGCCGTTCAAAATTCTGATGTGTGACCTGAAGATTAGCTGTGTCAGCTCTTGACAAAACTGTAATACGATTGCAAGTACCTGTTTCCTTGGCAaaaaaaaaa ]
[-] EMBL CB635783 [ TTCGTCCACTATCTGTTCTCATCCGTGAAGATCGATTGATGAATGAAGATTACGATACTCTCTGGCCCTCCGGATTCGTGTTCCCTGTGTGTGGGTGTGAACTTTCACCATGAGATGCACTGTTTATTGTTTGAGGAAAAAATGATCAACAGAAGATGTTTGTAAGATGAAAAGTATTCTCCACCTAGCGGACGTAGTCATTTTTTCCTCTATTCCACCCGTTGTTGCGAGTTGTAACTGCTAGAGTTAATTAATCTAGATACATGCAACCCGGCTTTGCAAGGGTTTAAGAGCAACGCTATGTTGATTATCGTGATTGGCAGATAGAATTCTGTCATATTCAAGTGAAAATGTAGCCACCTGCC ]
consensusID : consensus_14142#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 494 fasta sequence
[TATCTTTTCCATGGTATTGCTGCCGGATATGTCAGTGTGCGGCTGTGGAAGACTATTTGTGGCACATCTGAAGGGTGGAGATCAGTGTCCTGCGTTAACTGCCTGCTGCTTCCCTGATGTCTGATTCATGGTCCTTACTGTCTAATACTTCGTCTCATGGGGAATCAAGAGCACTGGAGCTTTACCTATCTCACTATATCTTCGCCCTTCTATGCTATAGTGGTCTCCTGCACTACTCTAGCTGCGCGTTCAACCTACATTGCTGGGAGTGGCGCTATAGGTAGGGTTACAANGTACTCACGCTGCCAGTATTAGTACGTATTTCTCTCGATCGCGATAGCCGAANCCCNAGGAATACCTCGGCAGGAGAAAAGAGTACCCATTGGCAATCGTGGCANANATTANCCCNCCCATTNCNGANTNGNGGNCCTCATGCNTNGTGGNCTTNCACGTCTAGGTNTTTAGTCANGNCGGNAANNACCTAGCCNTNCGAC]
[+] EMBL CA753181 [TATCTTTTCCATGGTATTGCTGCCGGATATGTCAGTGTGCGGCTGTGGAAGACTATTTGTGGCACATCTGAAGGGTGGAGATCAGTGTCCTGCGTTAACTGCCTGCTGCTTCCCTGATGTCTGATTCATGGTCCTTACTGTCTAATACTTCGTCTCATGGGGAATCAAGAGCACTGGAGCTTTACCTATCTCACTATATCTTCGCCCTTCTATGCTATAGTGGTCTCCTGCACTACTCTAGCTGCGCGTTCAACCTACATTGCTGGGAGTGGCGCTATAGGTAGGGTTACAANGTACTCACGCTGCCAGTATTAGTACGTATTTCTCTCGATCGCGATAGCCGAANCCCNAGGAATACCTCGGCAGGAGAAAAGAGTACCCATTGGCAATCGTGGCANANATTANCCCNCCCATTNCNGANTNGNGGNCCTCATGCNTNGTGGNCTTNCACGTCTAGGTNTTTAGTCANGNCGGNAANNACCTAGCCNTNCGAC]
consensusID : consensus_14142#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 479 fasta sequence
[TTGACATCATTCTCCTTCGTGCACTATCTGTTCTCATCCGTGAAGATCGATTGATGAATGAAGATTACGATACTCTCTGGCCCTCCGGATTCGTGTTCCCTGTGTGTGGGTGTGAACTTTCACCATGAGATGCACTGTTTACTGTTTGAGGAGATTTTGATCAACTGAAGATGTTTTTAAGATGAAAGGTATTCTCCACCTAGCGGACGTAGTCATCTTTTCCTCTATTCCAACCGTTGTTGTGAGTTGTAACTGCTAGAGTTAATTAATCTAGATACATGCAACCCGGCTTTGCAAGGGTTTAAGAGCAACGCTATGTTGATTATCGTGATTGGCAGATAGAATTCTGTCATATTCAAGTGAAAATGTAGCCACCTGCCGTTCAAAATTTTGATGTGTGACCTGAAGATTAGCTGTGTCAGCTCTTGACAAAACTGTAATACGATTGCAAGTACCTGTTTCCTTGGCAAAAAAAAAAA]
[-] EMBL CF331975 [TTGACATCATTCTCCTTCGTGCACTATCTGTTCTCATCCGTGAAGATCGATTGATGAATGAAGATTACGATACTCTCTGGCCCTCCGGATTCGTGTTCCCTGTGTGTGGGTGTGAACTTTCACCATGAGATGCACTGTTTACTGTTTGAGGAGATTTTGATCAACTGAAGATGTTTTTAAGATGAAAGGTATTCTCCACCTAGCGGACGTAGTCATCTTTTCCTCTATTCCAACCGTTGTTGTGAGTTGTAACTGCTAGAGTTAATTAATCTAGATACATGCAACCCGGCTTTGCAAGGGTTTAAGAGCAACGCTATGTTGATTATCGTGATTGGCAGATAGAATTCTGTCATATTCAAGTGAAAATGTAGCCACCTGCCGTTCAAAATTTTGATGTGTGACCTGAAGATTAGCTGTGTCAGCTCTTGACAAAACTGTAATACGATTGCAAGTACCTGTTTCCTTGGCAAAAAAAAAAA]
consensusID : consensus_14142#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 169 fasta sequence
[TTTTAAGATGAAAGGTATTCTCCACCTAGCGGACGTAGTATTTTTTCCTCTATCCAACCGTTGTTGTGAGTTGTAACTGCAGAGTTATTAACTGACTCACCCGGCTTTCAAGGGTTGGCACCATGTGATGATTGCATGACTCAATCAGGAAAGACCCGCAATTGGACTA]
[+] EMBL AA751066 [TTTTAAGATGAAAGGTATTCTCCACCTAGCGGACGTAGTATTTTTTCCTCTATCCAACCGTTGTTGTGAGTTGTAACTGCAGAGTTATTAACTGACTCACCCGGCTTTCAAGGGTTGGCACCATGTGATGATTGCATGACTCAATCAGGAAAGACCCGCAATTGGACTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14142#0 TCTCTCTCGCCGTGCATCTCTTTCCCCTACCATCCCACGCCTCCCTCTCCCCCGATCCAT 60
consensus_14142#2 ------------------------------------------------------------
consensus_14142#3 ------------------------------------------------------------
consensus_14142#1 ------------------------------------------------------------
consensus_14142#0 CCACCGGCAAGCGGCCGCTTCCGCCACCGCGTCACCAAGGTTAGCTCACACATGTTCTAG 120
consensus_14142#2 ------------------------------------------------------------
consensus_14142#3 ------------------------------------------------------------
consensus_14142#1 ------------------------------------------------------------
consensus_14142#0 GCTATTGGAGGATCTTTGCTTCAGATGGCTGGGGCTCTGCATATTTCTTGTTCTCCGGCT 180
consensus_14142#2 ------------------------------------------------------------
consensus_14142#3 ------------------------------------------------------------
consensus_14142#1 ------------------------------------------------------------
consensus_14142#0 CCATTATTGTGGGCTCTTCTGTTGCTGACTGTGTCACCAGGCAATGCATTCTACTTGCCT 240
consensus_14142#2 ------------------------------------------------------------
consensus_14142#3 ------------------------------------------------------------
consensus_14142#1 ------------------------------------------------------------
consensus_14142#0 GGCAGCTACATGCACACATACTCCCAAGGTGAGGAAATATGGGCCAAGGTGAACTCCCTT 300
consensus_14142#2 ------------------------------------------------------------
consensus_14142#3 ------------------------------------------------------------
consensus_14142#1 ------------------------------------------------------------
consensus_14142#0 ACGTCCATCGAGACAGAGATGCCATTCAGCTACTACAGCCTGCCATACTGCCGGCCCCAA 360
consensus_14142#2 ------------------------------------------------------------
consensus_14142#3 ------------------------------------------------------------
consensus_14142#1 ------------------------------------------------------------
consensus_14142#0 GGCGGCATTAAGAAGAGCGCTGAGAACCTCGGTGAACTTCTCATGGGTGATCAGATAGAC 420
consensus_14142#2 ------------------------------------------------------------
consensus_14142#3 ------------------------------------------------------------
consensus_14142#1 ------------------------------------------------------------
consensus_14142#0 AATTCACCCTACAGGTTCCGTGTGAATGTTAACGAGTCCCTCTACCTCTGCACCACAAAA 480
consensus_14142#2 ------------------------------------------------------------
consensus_14142#3 ------------------------------------------------------------
consensus_14142#1 ------------------------------------------------------------
consensus_14142#0 GGGCTTAATGAGAATGATGCAAAGCTCCTCAAGCAGCGCACACGTGACCTCTACCAGGTT 540
consensus_14142#2 ------------------------------------------------------------
consensus_14142#3 ------------------------------------------------------------
consensus_14142#1 ------------------------------------------------------------
consensus_14142#0 AACATGATGCTGGATAATTTGCCTGTCATGCGTTTTACTGAGCAGAATGGTATCACTGTA 600
consensus_14142#2 ------------------------------------------------------------
consensus_14142#3 ------------------------------------------------------------
consensus_14142#1 ------------------------------------------------------------
consensus_14142#0 CAGTGGACTGGCTTTCCTGTTGGTTACACTCCAGCTGGAATCTCGGAAGATTACATCATT 660
consensus_14142#2 ------------------------------------------------------------
consensus_14142#3 ------------------------------------------------------------
consensus_14142#1 ------------------------------------------------------------
consensus_14142#0 AACCATTTAAAGTTTAAGGTGTTGGTCCATGAGTACGAGGGCAGGAATGTGGAGATCATT 720
consensus_14142#2 ------------------------------------------------------------
consensus_14142#3 ------------------------------------------------------------
consensus_14142#1 ------------------------------------------------------------
consensus_14142#0 GGCACTGGGGAAGAAGGATCTGGTGTCATCTCGGAATTTGACAAGAAGGGGATGTCTGGG 780
consensus_14142#2 ------------------------------------------------------------
consensus_14142#3 ------------------------------------------------------------
consensus_14142#1 ------------------------------------------------------------
consensus_14142#0 TATCAGATTGTTGGTTTTGAGGTTGTGCCTTGCAGTGTGAAGCGTGATGCCGAGGCTTTC 840
consensus_14142#2 ------------------------------------------------------------
consensus_14142#3 ------------------------------------------------------------
consensus_14142#1 ------------------------------------------------------------
consensus_14142#0 TCCAAGAGTAACATGTATGACAGCATTGAACCTGTGAGCTGCCCAATGGAGCTTCAGAAG 900
consensus_14142#2 ------------------------------------------------------------
consensus_14142#3 ------------------------------------------------------------
consensus_14142#1 ------------------------------------------------------------
consensus_14142#0 TCTCAGGTGATCAGGCAACAGGAGAGGATCACTTTCACTTATGACGTTGAATTTGTGAAG 960
consensus_14142#2 ------------------------------------------------------------
consensus_14142#3 ------------------------------------------------------------
consensus_14142#1 ------------------------------------------------------------
consensus_14142#0 AGTGACATCAAGTGGCCATCTAGGTGGGATGCTTATCTGAAGATGGAGGCAGGTGCTAAA 1020
consensus_14142#2 ------------------------------------------------------------
consensus_14142#3 ------------------------------------------------------------
consensus_14142#1 ------------------------------------------------------------
consensus_14142#0 GTCCACTGGTTCTCCATTATGAACTCCCTAATGGTGATCCTGTTCTTGGCTGGTATTGTC 1080
consensus_14142#2 ------------------------------------------------------------
consensus_14142#3 ------------------------------------------------------------
consensus_14142#1 ------------------------------------------------------------
consensus_14142#0 TTTGTTATATTCTTGAGAACTGTCAGGAGGGACTTGACGAGGTATGAAGAACTCGACAAG 1140
consensus_14142#2 ------------------------------------------------------------
consensus_14142#3 ------------------------------------------------------------
consensus_14142#1 ------------------------------------------------------------
consensus_14142#0 GAGGCGCAGGCACAGATGAATGAGGAGCTATCTGGGTGGAAGCTTGTTGTGGGAGATGTA 1200
consensus_14142#2 ------------------------------------------------------------
consensus_14142#3 ------------------------------------------------------------
consensus_14142#1 ------------------------------------------------------------
consensus_14142#0 TTCAGAGAGCCAACTTGCCCTAAGCTGCTGTGTGTCATGATTGGTGATGGTGTTCAGATT 1260
consensus_14142#2 ------------------------------------------------------------
consensus_14142#3 ------------------------------------------------------------
consensus_14142#1 ------------------------------------------------------------
consensus_14142#0 TTGGGCATGGCAATAGTAACAATTATTTTCTCCACACTTGGGTTCATGTCTCCAGCATCA 1320
consensus_14142#2 ------------------------------------------------------------
consensus_14142#3 ------------------------------------------------------------
consensus_14142#1 ------------------------------------------------------------
consensus_14142#0 AGAGGAATGCTTCTCACTGGGATGATCATTCTCTATCTTTTCCTTGGTATTGCAGCTGGA 1380
consensus_14142#2 ------------------------------------------------------------
consensus_14142#3 ------------------------------------------------------------
consensus_14142#1 ------------------------------------------------------------
consensus_14142#0 TATGTCAGTGTGCGGCTGTGGAAGACTATTAAGGGCACATCTGAAGGGTGGAGATCAGTG 1440
consensus_14142#2 ------------------------------------------------------------
consensus_14142#3 ------------------------------------------------------------
consensus_14142#1 ------------------------------------------------------------
consensus_14142#0 TCCTGGTTAACTGCCTGCTTCTTCCCTGGTGTCTTGTTCATGGTCCTTACTGTCTTAAAC 1500
consensus_14142#2 ------------------------------------------------------------
consensus_14142#3 ------------------------------------------------------------
consensus_14142#1 ------------------------------------------------------------
consensus_14142#0 TTCGTCTTATGGGGAAGCAAGAGCACTGGAGCTTTACCTATCTCACTATTTTTCGCCCTT 1560
consensus_14142#2 ------------------------------------------------------------
consensus_14142#3 ------------------------------------------------------------
consensus_14142#1 ------------------------------------------------------------
consensus_14142#0 TTAGCTATGTGGTTCTGCATATCTGTGCCGTTAACTCTTGTTGGTGGCTTTGTTGGTACA 1620
consensus_14142#2 ------------------------------------------------------------
consensus_14142#3 ------------------------------------------------------------
consensus_14142#1 ------------------------------------------------------------
consensus_14142#0 AGATCAGCGCAGATAGAGTTTCCTGTCCGTACCAACCAGATCCCGAGAGAGATCCCTGCA 1680
consensus_14142#2 ------------------------------------------------------------
consensus_14142#3 ------------------------------------------------------------
consensus_14142#1 ------------------------------------------------------------
consensus_14142#0 CGGAAATACCCATCATGGCTTCTTGTCCTTGGTGCAGGAACACTGCCATTCGGAACCCTG 1740
consensus_14142#2 ------------------------------------------------------------
consensus_14142#3 ------------------------------------------------------------
consensus_14142#1 ------------------------------------------------------------
consensus_14142#0 TTCATTGAGCTCTTCTTTATTCTGTCAAGCATTTGGCTTGGAAGGTTCTACTATGTGTTT 1800
consensus_14142#2 ------------------------------------------------------------
consensus_14142#3 ------------------------------------------------------------
consensus_14142#1 ------------------------------------------------------------
consensus_14142#0 GGCTTTCTGCTAATTGTCCTTGTGCTGCTTGTCATTGTCTGCGCTGAGGTCTCTGTTGTT 1860
consensus_14142#2 ------------------------------------------------------------
consensus_14142#3 ------------------------------------------------------------
consensus_14142#1 ------------------------------------------------------------
consensus_14142#0 CTGACATACATGAACCTCTGCGTGGAGGACTGGAGGTGGTGGTGGAAAGCTTTCTTTGCC 1920
consensus_14142#2 ------------------------------------------------------------
consensus_14142#3 ------------------------------------------------------------
consensus_14142#1 ------------------------------------------------------------
consensus_14142#0 TCAGGATCTGTTGCAATCTATGTGTTCCTCTACTCCATCAACTACTTGGTATTTGACCTC 1980
consensus_14142#2 ------------------------------------------------------------
consensus_14142#3 ------------------------------------------------------------
consensus_14142#1 ------------------------------------------------------------
consensus_14142#0 AGAAGCCTGAGCGGGCCTGTCTCTGCCATGCTTTACCTTGGTTACTCATTCCTCATGGCA 2040
consensus_14142#2 ------------------------------------------------------------
consensus_14142#3 ------------------------------------------------------------
consensus_14142#1 ------------------------------------------------------------
consensus_14142#0 TTTGCAATCATGCTGGCCACTGGAACCATTGGATTTTTGACATCATTCTCCTTCGTGCAC 2100
consensus_14142#2 ------------------------------------TTGACATCATTCTCCTTCGTGCAC 24
consensus_14142#3 ------------------------------------------------------------
consensus_14142#1 -------------------------------TATCTTTTCCATGGTATTGCTGCCGGATA 29
consensus_14142#0 TATCTGTTCTCATCCGTGAAGATCGATTGATGAA-----TGAAGATTACGATACTCTCTG 2155
consensus_14142#2 TATCTGTTCTCATCCGTGAAGATCGATTGATGAA-----TGAAGATTACGATACTCTCTG 79
consensus_14142#3 ------------------------------------------------------------
consensus_14142#1 TGTCAGTGTGCGGCTGTGGAAGACTATTTGTGGCACATCTGAAGGGTGGAGATCAGTGTC 89
consensus_14142#0 GCCCTCCGGATTCGTGTTCCCTGTGTGTGGGTGTGAACTTTCACCATGAGATGCACTGTT 2215
consensus_14142#2 GCCCTCCGGATTCGTGTTCCCTGTGTGTGGGTGTGAACTTTCACCATGAGATGCACTGTT 139
consensus_14142#3 ------------------------------------------------------------
consensus_14142#1 CTGCGTTAACTGCCTGCTGCTTCCCTGATGTCTGATTCATGGTCCTTACTGTCTAATACT 149
consensus_14142#0 TATTGTTTGAGGAGATTTTGATCAACTGAAGATGTTTTTAAGATGAAAGGTATTCTCCAC 2275
consensus_14142#2 TACTGTTTGAGGAGATTTTGATCAACTGAAGATGTTTTTAAGATGAAAGGTATTCTCCAC 199
consensus_14142#3 -----------------------------------TTTTAAGATGAAAGGTATTCTCCAC 25
consensus_14142#1 TCGTCTCATGGGGAATCAAGAGCA-CTGGAGCTTTACCTATCTCACTATATCTTCGCCCT 208
** * * *** **
consensus_14142#0 CTAGCGGACGTAGTCATTTTTTCCTCTATTCCAACCGTTGTTGTGAGTTGTA--ACTGCT 2333
consensus_14142#2 CTAGCGGACGTAGTCATCTTTTCCTCTATTCCAACCGTTGTTGTGAGTTGTA--ACTGCT 257
consensus_14142#3 CTAGCGGACGTAGT-ATTTTTTCCTCTAT-CCAACCGTTGTTGTGAGTTGTA--ACTGC- 80
consensus_14142#1 TCTATGC-TATAGTGGTCTCCTGCACTACTCTAGCTGCGCGTTCAACCTACATTGCTGGG 267
* **** * * * * *** * * * * * * * * ***
consensus_14142#0 AGAGTTAAT-TAATCTAGATACATGCAACCCGGCTTTGCAAGGGTTTAAGAGCAACGCTA 2392
consensus_14142#2 AGAGTTAAT-TAATCTAGATACATGCAACCCGGCTTTGCAAGGGTTTAAGAGCAACGCTA 316
consensus_14142#3 AGAGTTA-T-TAACT--GACTCA-----CCCGGCTTT-CAAGGGTT----GGCACCA-TG 125
consensus_14142#1 AGTGGCGCTATAGGTAGGGTTACAANGTACTCACGCTGCCAGTATTAGTACGTATT--TC 325
** * * ** * * * * * ** ** * * *
consensus_14142#0 TGTTGATTATCGTGATTGGCAGATAGAATTCTGTCATATTCAAGTGAAAATGTAGCCACC 2452
consensus_14142#2 TGTTGATTATCGTGATTGGCAGATAGAATTCTGTCATATTCAAGTGAAAATGTAGCCACC 376
consensus_14142#3 TGATGATTG-CATGACT--CAATCAGGAAAGACCCGCAATTGGACTA------------- 169
consensus_14142#1 TCTCGATCGCGATAGCCG-AANCCCNAGGAATACCTCGGCAGGAGAAAAGAGTACCCATT 384
* *** * * * *
consensus_14142#0 TGCCGTTCAAAATTCTGATGTGTGACCTGAAGATTAGCTGTGTCAGCTCTTGACAAAACT 2512
consensus_14142#2 TGCCGTTCAAAATTTTGATGTGTGACCTGAAGATTAGCTGTGTCAGCTCTTGACAAAACT 436
consensus_14142#3 ------------------------------------------------------------
consensus_14142#1 GGCAATCGTGGCANANATTANCCCNCCCATTNCNGANTNGNG--GNCCTCATGCNTNGTG 442
consensus_14142#0 GTAATACGATTGCAAGTACCTGTTTCCTTGGCATTTTTTTATCATGTCCAGTACAAATTT 2572
consensus_14142#2 GTAATACGATTGCAAGTACCTGTTTCCTTGGCAAAAAAAAAAA----------------- 479
consensus_14142#3 ------------------------------------------------------------
consensus_14142#1 GNCTTNCACGTCTAGGTNTTTAGTCANGNCGGNAANNACCTAGCCNTNCGAC-------- 494
consensus_14142#0 ATATTTCCTTATCTGTAGTGGGATA 2597
consensus_14142#2 -------------------------
consensus_14142#3 -------------------------
consensus_14142#1 -------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||