These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14214#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 2364 fasta sequence [CCTAAGACTGTGACTCACTAGCTTGACACGAAGAAAATTCGAGGAAAAGAACACATTGAGCGATGCGATGCGATGTGATGGCGATGGCGTCATCCGAGCGCCGGTGACCGGCGACGGGGACTCCTCCTCCGCCGCCGCCGCCGCCATCATCGTCGTCGTCGTTGCCGTCGATAATCCTGACCCAGATCCGGCTAATTATATTATTACCCGATTCCAATCAGCTGCTAATCGAGTGGTAATCTCCATCACATCACATCACAGCCTCGTTCGTTCGTCGCTGACGGCACATTATTATATCCTAGTATTATATTATTAATTAATCGCCGTCACCTCGTCGCCATTGACGACCTCTTCCTCTTCTTCCTCCTCCTCCTCTTCCACTCCCCCACCTCACCTCGCCGCTCGCCGTGGCGGCGGCTATAAATACCACTCCACCTGCTGCCGTCGCCGCCGCCATAGCCTCCCATCCTCCCGCCGCCGCCGCCTGCATCGACGACGATGGTGAGGCTGCCCTACGTGACCGCGCTGACCACGCTCTTCAGCTACGGCCTCCTCTTCGCCTTCGGCCAGCTCCGCGACTTCTTCCGCAGGATCCTCGACGCTGGCAAATCCAGCAATCTCAAGGGCTACGCGCCGATTTGCCTTGGGCTGGAGGATTTCTACACGCGCCGCCTCTATCTCCGCATCCAGGACTGTTTTGGCCGGCCAATTGCTAGCGCACCAGATGCTTGGTTTGACGTGGTTGAGCGTTACTCAAATGACAGTAACAAGACACTGCATCGTACCACAAAAACATCTAAGTGCCTTAACTTAGGTTCCTACAACTACCTTGGCTTTGCCGCGGCAGATGAATACTGCACCCCTCGTGTTATTGAGTCACTGAAGAAATACTCTGCTAGTACTTGCAGTGTCCGAGTCGATGGGGGCAACACTAAGCTGCATGTGGAACTTGAAGAGCTGGTTGCAAGATTTGTTGGCAAGCCTGCAGCTATTCTTTTTGGCATGGGTTACGTGACGAACTCTGCAATCATTCCTGCCTTGGTTGGGAAGGGAGGACTCATAATTAGTGACTCATTGAACCATAACTCTATAGTGAATGGGGCTAGGGGTTCAGGAGCTACTGTTCGGGTTTTTCAACATAACAATCCTGCACACTTGGAAGAGGTATTGAGAGAGCAGATTGCAGGGGGCCAGCCTCGTACACACAGGCCGTGGAAGAAGATTATTGTGATTGTTGAGGGAATATATAGCATGGAGGGGGAGCTATGCAAACTCCCTGAGGTTATAGCTGTCTGCAAGAAATATAAGGCTTACACATATTTAGACGAGGCACACAGTATTGGAGCTGTTGGTAAAACCGGGAGAGGTGTTTGTGAGCTACTAGGTGTGGATCCAGCTGATGTCGATATTATGATGGGAACATTTACTAAATCATTTGGATCATGCGGAGGTTACATTGCAGCATCAAAAGAGATTATTGATCATCTGAAGCACATATGCCCTGCCCATATCTATGCAACATCCATGTCACCTCCAGCTGTTCAGCAGGTCATTTCTGCAATAAAAGTTATCCTTGGTGAAGATGGATCTAACAGAGGGGCCAAGAAGCTTGCTCAGATTCGAGAGAACAGCAATTTCTT-CCGTTCAGAGCTTCAGAAAATGGGTTTTGAAGTTCTTGGAGACAATGACTCGCCGGTCATGCCTATCATGC-TTTAC-AATCCTGCTAAAATACCTGCGTTCTCAAGAGAGTGCCTGAGGCAACACGTTGCTGTTGTTACTGTTGCATTTCCTGCTACACCACTACTGCTTGCCAGAGCTA-GGATATGTATCTCAGCTTCCCACTCAAGGGAAGATCTTATT-AAAGGATT-GGAGGTTATC-AGCAAAGTTGGTGA-CCTCG-TGGGAATCAAATA-CTTCCCA-GTGGAACAT-GAAAAGAC-TGCATCTGTTGAG-AAACTGAAGAAGCTTCAATGAAC-ACC-TA-CAACCA-GAAGAAATAT-ACT-GGGTGATCTAGGCAGTGT-GCCATGCCTCGG-TTCGG-CTCATGTGCCTCGGACCCTTTTGATTTTCCTTTGTTTCTGAAGTGGCTTAGATCTGTACAGCTTGTATTATCATCCATCATAGTCCAAAACACAACACAATGAT-AGACA-CTGTTTTGTCGAGTTCAGAGGAAGCAAAAGTTTCGCTGTTACAGCTCTGAATCTTGC-GAGTAAAGTGTCTGAAATCATGTAGAGACTCTTCCTCTTTTGATTTTAGCTTCCTTTGTAGATGCAACGTCAGTTGCATCGATTGTGTGTGAAGTAAGCTTCACTCATAGTGTGAGGTCTGGTTGCTGTGATCAAGTGATTAAGCGAAAAAATGTTGTTAAAAAAAAAA] [+] EMBL AK120617 [CCTAAGACTGTGACTCACTAGCTTGACACGAAGAAAATTCGAGGAAAAGAACACATTGAGCGATGCGATGCGATGTGATGGCGATGGCGTCATCCGAGCGCCGGTGACCGGCGACGGGGACTCCTCCTCCGCCGCCGCCGCCGCCATCATCGTCGTCGTCGTTGCCGTCGATAATCCTGACCCAGATCCGGCTAATTATATTATTACCCGATTCCAATCAGCTGCTAATCGAGTGGTAATCTCCATCACATCACATCACAGCCTCGTTCGTTCGTCGCTGACGGCACATTATTATATCCTAGTATTATATTATTAATTAATCGCCGTCACCTCGTCGCCATTGACGACCTCTTCCTCTTCTTCCTCCTCCTCCTCTTCCACTCCCCCACCTCACCTCGCCGCTCGCCGTGGCGGCGGCTATAAATACCACTCCACCTGCTGCCGTCGCCGCCGCCATAGCCTCCCATCCTCCCGCCGCCGCCGCCTGCATCGACGACGATGGTGAGGCTGCCCTACGTGACCGCGCTGACCACGCTCTTCAGCTACGGCCTCCTCTTCGCCTTCGGCCAGCTCCGCGACTTCTTCCGCAGGATCCTCGACGCTGGCAAATCCAGCAATCTCAAGGGCTACGCGCCGATTTGCCTTGGGCTGGAGGATTTCTACACGCGCCGCCTCTATCTCCGCATCCAGGACTGTTTTGGCCGGCCAATTGCTAGCGCACCAGATGCTTGGTTTGACGTGGTTGAGCGTTACTCAAATGACAGTAACAAGACACTGCATCGTACCACAAAAACATCTAAGTGCCTTAACTTAGGTTCCTACAACTACCTTGGCTTTGCCGCGGCAGATGAATACTGCACCCCTCGTGTTATTGAGTCACTGAAGAAATACTCTGCTAGTACTTGCAGTGTCCGAGTCGATGGGGGCAACACTAAGCTGCATGTGGAACTTGAAGAGCTGGTTGCAAGATTTGTTGGCAAGCCTGCAGCTATTCTTTTTGGCATGGGTTACGTGACGAACTCTGCAATCATTCCTGCCTTGGTTGGGAAGGGAGGACTCATAATTAGTGACTCATTGAACCATAACTCTATAGTGAATGGGGCTAGGGGTTCAGGAGCTACTGTTCGGGTTTTTCAACATAACAATCCTGCACACTTGGAAGAGGTATTGAGAGAGCAGATTGCAGGGGGCCAGCCTCGTACACACAGGCCGTGGAAGAAGATTATTGTGATTGTTGAGGGAATATATAGCATGGAGGGGGAGCTATGCAAACTCCCTGAGGTTATAGCTGTCTGCAAGAAATATAAGGCTTACACATATTTAGACGAGGCACACAGTATTGGAGCTGTTGGTAAAACCGGGAGAGGTGTTTGTGAGCTACTAGGTGTGGATCCAGCTGATGTCGATATTATGATGGGAACATTTACTAAATCATTTGGATCATGCGGAGGTTACATTGCAGCATCAAAAGAGATTATTGATCATCTGAAGCACATATGCCCTGCCCATATCTATGCAACATCCATGTCACCTCCAGCTGTTCAGCAGGTCATTTCTGCAATAAAGGTTATCCTTGGTGAAGATGGATCTAACAGAGGGGCCAAGAAGCTTGCTCAGATTCGAGAGAACAGCAATTTCTT CCGTTCAGAGCTTCAGAAAATGGGTTTTGAAGTTCTTGGAGACAATGACTCGCCGGTCATGCCTATCATGC TTTAC AATCCTGCTAAAATACCTGCGTTCTCAAGAGAGTGCCTGAGGCAACACGTTGCTGTTGTTACTGTTGCATTTCCTGCTACACCACTACTGCTTGCCAGAGCTA GGATATGTATCTCAGCTTCCCACTCAAGGGAAGATCTTATT AAAGGATT GGAGGTTATC AGCAAAGTTGGTGA CCTCG TGGGAATCAAATA CTTCCCA GTGGAACAT GAAAAGAC TGCATCTGTTGAG AAACTGAAGAAGCTTCAATGAAC ACC TA CAACCA GAAGAAATAT ACT GGGTGATCTAGGCAGTGT GCCATGCCTCGG TTCGG CTCATGTGCTTCGGACCCTTTTGATTTTCCTTTGTTTCTGAAGTGGCTTAGATCTGTACAGCTTGTATTATCATCCATCATAGTCCAAAACACAACACAATGAT AGACA CTGTTTTGTCGAGTTCAGAGGAAGCAAAAGTTTCGCTGTTACAGCTCTGAATCTTGC GAGTAAAGTGTCTGAAATCATGTAGAGACTCTTCCTCTTTTGATTTTAGCTTCCTTTGTAGATGCAACGTCAGTTGCATCGATTGTGTGTGAAGTAAGCTTCACTCATAGTGTGAGGTCTGGTTGCTGTGATCAAGTGATTAAGCGAAAAAATGTTGT ] [+] EMBL CB620301 [ ATTGACGACCTCTTCCTCTTCT TCCTCCTCCTCTTCCACTCCCCCACCTCACCTCGCCGCTCGCCGTGGCGGCGGCTACAAATACCACTCCACCTGCTGCCGTCGCCGCCGCCATCGCCTCCCATCCTCCCGCCGCCGCCGCCTGCATCGACGACGATGGTGAGGCTGCCCTACGTGACCGCGCTGACCACGCTCTTCAGCTACGGCCTCCTCTTCGCCTTCGGCCAGCTCCGCGACTTCTTCCGCAGGATCCTCGACGCTGGCAAATCCAGCAATCTCAAGGGGTACGCGCCGATTTGCCTTGGGCTGGAGGATTTCTACACGCGCCGCCTCTATCTCCGCATCCAGGACTGTTTTGGCCGGCCAATTGCTAGCGCACCAGATGCTTGGTTTGACGTGGTTGAGCGTTACTCAAATGACAGTAACAAGACACTGCATCGTACCACAAAAACATCTAAGTGCCTTAACTTAGGTTCCTACAACTACCTTGGCTTTGCCGCGGCAGATGAATACTGCACCCCTCGTGTTATTGAGTCACTGAAGAAATACTCTGCTAGTACTTGCAGTGTCCGAGTCGATGGGGGCAACACTAAGCTGCATGTGGAACTTGAAGAGCTGGTTGCAAGATTTGTTGGCAAGCCTGCAGCTATTCTTTTTGGCATGGGTTATGTGACGAACTCTGCAATCATTCCTGCCTTGGTTGGCAAGGGAGGACTCATAATTAGTGACTCATTGAACCATAACTCTATAGTGAATGGGGCTAGGGGTTCAGGAGCTACTGTTCGGGTTTTTCAACATAACAAT ] [+] EMBL OSS0877A [ ACCACGCTCTTCAGCTACGGCCTCCTCTTCGCCTTCGGCCAGCTCCGCGACTTCTTCCGCA GATCCTCGACGCTGGCAAATCCAGCAATCTCAAGGGCTACGCGCCGATTTGCCTTGGGCTGGAGGATTTCTACACGCGCCGCCTCTATCTCCGCATCCAGGACTGTTTTGGCCGGCCAATTGCTAGCGCACCAGATGCTTGGTTTGACGTGGTTGAGCGTTACTCAAATGACAGTAACAAGACACTGCATCGTACCACAAAAACATCTAAGTGCCTTAACTTAGGTTCCTACAACTACCTTGGCTTTGCCGCGGCAGATGAATACTGCACCCCTCGTGTTATTGAGTCACTGAAGGAATACTCTGCTAGTACTTGCAGTGTCCGAGTCGATGGGGG ] [+] EMBL CA766093 [ ATAGCATGGAGGGGGAGCTATGCAAACTCCCTGAGGTTATAGCTGTCTGCAAGAAATATAAGGCTTACACATATTTAGACGAGGCACACAGTATTGGAGCTGTTGGTAAAACCGGGAGAGGTGTTTGTGAGCTACTAGGTGTGGATCCAGCTGATGTCGATATTATGATGGGAACATTTACTAAATCATTTGGATCATGCGGAGGTTACATTGCAGCATCAAAAGAGATTATTGATCATCTGAAGCACATATGCCCTGCCCATATCTATGCAACATCCATGTCACCTCCAGCTGTTCAGCAGGTCATTTCTGCAATAAAAGTTATCCTTGGTGAAGATGGATCTAACAGAGGGGCCAAGAAGCTTGCTCAGATTCGAGAGAACAGCAATTTCTT CCGTTCAGAGCTTCAGAAAATGGGTTTTGAAGTTCTTGGAGACAATGACTCGCCGGTCATGCCTATCATGC TTTAC AATCCTGCTGAAATACCTGCATTCTCAAGAGAGTGCCTGAGGCAACACGTTGCTGTTGGTACTGGTGCATTTCCTGCTACACCACTACTGCTTGCCAGAGCTAGGGATATGTATCTCAGCTTCCCACTCAAGGGAAGATCNTATTAAAAGGATTGGGAGGNTATCAAGCAAAGNTGGGGANCCTCGNGGGGAATCAAATACCTTNCCA GNGGAACATGGAAAAGAC TGCATCTGGTGAA AAACTGGANAAGCTTCAATGGACNCCC TACCANCCA GAAAAAATTT CCTGGGGNGATCTAGGCAGGGG GGCCTGCCTCGG TTCGG CTt ] [+] EMBL CF323865 [ TGCAAGAAATATAAGGCTTACACATATTTAGACGAGGCACACAGTATTGGAGCTGTTGGTAAAACCGGGAGAGGTGTTTGTGAGCTACTAGGTGTGGATCCAGCTGATGTCGATATTATGATGGGAACATTTACTAAATCATTTGGATCATGCGGAGGTTACATTGCAGCATCAAAAGAGATTATTGATCATCTGAAGCACATATGCCCTGCCCATATCTATGCAACATCCATGTCACCTCCAGCTGTTCAGCAGGTCATTTCTGCAATAAAAGTTATCCTTGGTGAAGATGGATCTAACAGAGGGGCCAAGAAGCTTGCTCAGATTCGAGAGAACAGCAATTTCTT CCGTTCAGAGCTTCAGAAAATGGGTTTTGAAGTTCTTGGAGACAATGACTCGCCGGTCATGCCTATCATGC TTTAC AATCCTGCTAAAATACCTGCGTTCTCAAGAGAGTGCCTGAGGCAACACGTTGCTGTTGTTACTGTTGCATTTCCTGCTACACCACTACTGCTTGCCAGAGCTA GGATATGTATCTCA ] [+] EMBL CA765770 [ GTGAAGATGGATCTAACAGAGGGGCCAAGAAGCTTGCTCAGATTCGAGAGAACAGCAATTTCTT CCGTTCAGAGCTTCAGAAAATGGGTTTTGAAGTTCTTGGAGACAATGACTCGCCGGTCATGCCTATCATGC TTTAC AATCCTGCTAAAATACCTGCATTCTCAAGAGAGTGCCTGAGGCAACACGTTGCTGTTGTTACTGTTGCATTTCCTGCTACACCACTACTGCTTGCCAGAGCTA GGATATGTATCTCAGCTTCCCACTCAAGGGAAGATCTTATT AAAGGATT GGAGGTTATC AGCAAAGTTGGTGA CCTCG TGGGAATCAAATA CTTCCCA GTGGAACAT GAAAAGAC TGCATCTGTTGAG AAACTGAAGAAGCTTCAATGAAC ACC TA CAACCA GAAGAAATAT ACT GGGTGATCTAGGCAGTGT GCCATGCCTCGG TTCGG CTCATGTGCCTCGGACCCTTTTGATTTTCCTTTGTTTCTGAAGTGGCTTAGATCTGTACAGCTTGTATTATCATCCATCATAGTCCAAAACACAACACAATGATAAGACA CTGTTTTGTCGAGTTCAGAGGAAGCAAAAGTTTCGCTGTTACAGCT ] [-] EMBL CB620302 [ AGAAGCTTGCTCAGATTCGAGAGAACAGCAATTTCTTCCCGTTCAGAGCTTCAGAAAATGGGTTTTGAAGTTCTTGGAGACAATGACTCGCCGGTCATGCCTATCATGC TTTAC AATCCTGCTAAAATACCTGCATTCTCAAGAGAGTGCCTGAGGCAACACGTTGCTGTTGTTACTGTTGCATTTCCTGCTACACCACTACTGCTTGCCAGAGCTA GGATATGTATCTCAGCTTCCCACTCAAGGGAAGATCTTATT AAAGGATT GGAGGTTATC AGCAAAGTTGGTGA CCTCG TGGGAATCAAATA CTTCCCA GTGGAACAT GAAAAGAC TGCATCTGTTGAG AAACTGAAGAAGCTTCAATGAAC ACC TA CAACCA GAAGAAATAT ACT GGGTGATCTAGGCAGTGT GCCATGCCTCGG TTCGG CTCATGTGCCTCGGACCCTTTTGATTTTCCTTTGTTTCTGAAGTGGCTTAGATCTGTACAGCTTGTATTATCATCCATCATAGTCCAAAACACAACACAATGATAAGACA CTGTTTTGTCGAGTTCAGAGGAAGCAAAAGTTTCGCTGTTACAGCTCTGAATCTTGC GAGTAAAGTGTCTGAAATCATGTAGAGACTCTTCCTCTTTTGATTTTAGCTTCCTTTGTAGATGCAACGTCAGTTGCATCGATTGTGTGTGAAGTAAGCTTCACTCATAGTGTGAGGTCCGGTTAGGGTGATCAAGTGATTAAG ] [+] EMBL CA998917 [ TTCAGAAAATGGGTTTTGAAGTTCTTGGAGACAATGACTCGCCGGTCATGCCTATCATGC TTTAC AATCCTGCTAAAATACCTGCGTTCTCAAGAGAGTGCCTGAGGCAACACGTTGCTGTTGTTACTGTTGCATTTCCTGCTACACCACTACTGCTTGCCAGAGCTA GGATATGTATCTCAGCTTCCCACTCAAGGGAAGATCTTATT AAAGGATT GGAGGTTATC AGCAAAGTTGGTGA CCTCG TGGGAATCAAATA CTTCCCA GTGGAACAT GAAAAGAC TGCATCTGTTGAG AAACTGAAGAAGCTTCAATGAAC ACC TA CAACCA GAAGAAATAT ACT GGGTGATCTAGGCAGTGT GCCATGCCTCGG TTCGG CTCATGTGCTTCGGACCCTTTTGATTTTCCTTTGTTTCTGAAGTGGCTTAGATCTGTACAGCTTGTATTATCATCCATCATAGTCCAAAACACAACACAATGAT AGACA CTGTTTTGTCGAGTTCAGAGGAAGCAAAAGTTTCGCTGTTACAGCTCTGAATCTTGCGGAGT AAGTGTCTGAAATCATGTAGAGACTCTTCCTCTTTTGATTTTAGCTTCCTTTGTAGATGCAACGTCAGTTGCATCG ] [+] EMBL CB000787 [ TCAGAAAATGGGTTTTGAAGTTCTTGGAGACAATGACTCGCCGGTCATGCCTATCATGC TTTAC AATCCTGCTAAAATACCTGCGTTCTCAAGAGAGTGCCTGAGGCAACACGTTGCTGTTGTTACTGTTGCATTTCCTGCTACACCACTACTGCTTGCCAGAGCTA GGATATGTATCTCAGCTTCCCACTCAAGGGAAGATCTTATT AAAGGATT GGAGGTTATC AGCAAAGTTGGTGA CCTCG TGGGAATCAAATA CTTCCCA GTGGAACAT GAAAAGAC TGCATCTG ] [+] EMBL BI813411 [ ggtTCATG CTATCATGCTTTTACAAATCCTGCTAAAATACCTGCATTCTCAAGAGAGTGCCTGA GCAACACGTTGCTGTTGTTACTGTTGCATTTCCTGCTACACCACTACTGCTTGCCAGAGCTA GGATATGTATCTCAGCTTCCCACTCAAGGGAAGATCTTATT AAAGGATT GGAGGTTATC AGCAAAGTTGGTGA CCTCG TGGGAATCAAATA CTTCCCA GTGGAACAT GAAAAGAC TGCATCTGTTGAG AAACTGAAGAAGCTTCAATGAAC ACC TA CAACCA GAAGAAATAT ACT GGGTGATCTAGGCAGTGT GCCATGCCTCGG TTCGG CTCATGTGCCTCGGACCCTTTTGATTTTCCTTTGTTTCTGAAGTGGCTTAGATCTGTACAGCTTGTATTATCATCCATCATAGTCCCAAACACAACAC ATGATAAGAC CTGTTTTGTCGAGTTCAGAGGAAGC AAAGTTTCGCTGTTACAGCTCTGAAaaaaaaaa ] [+] EMBL BI807700 [ GATCTTATT AAAGGATT GGAGGTTATC AGCAAAGTT GTGACCCTCG TGGGAATCAAATA CTTCCCACGTGGAACAT GAAAAGACGTGCATCTGTTGAGAAAACTGAAGAAGCTTCCATGAAC ACCTTA CCACCATGAAGAAATATAACT GGGTGATCTA GCAGTGTGGCCATGCCTCGGTTTCGGCCTCATGTGCCTCGGACCC TTTGATTTTCCTTTGTTTCTGAAGTGGCTTAGATCTGTACAGCTTGTATTATCATCCATCATAGTCC AAACAC ACAC ATGATAAGACACCTGTTTTGTCGAGTTCAGAGGAAGC AAAGTTTCGCTGTTACAGCTCTGAATCTTGC GAGTAAAGTGTCTGAAATCATGTAGAGACTCTTCCTCTTTTGATTTTAGCTTCCTTTGTAGATGC ACGTCAGTTGCATCGATTGTGTGTGAAGTAAGCTTCACTCATAGTGTGAGGTCTGGTTGCTGTGATCAAGTGATTAAGCGAAAAAATGTTGTTAAAAAAA ] [+] EMBL AU033000 [ AGCTTGTATTATCATCCATCATNGTCCAAAACACAACACAATGAT AGACA CTGTTTTGTCGNGTTCAGNGGAAGCAAAAGTTTCGCTGTTACAGCTCTGAATCTTGC GNGTAANGTGTCTGAAATCATGTNGAGACTCTTCCTCTTTTGATTTTAGCTTCCTTTGTAGATGCNACGTNNGTTGCATCGATTGTGTGTGANGTAAGCTTCACTCATNGTGTGNGGTCTGGTTGCTGTGATCAAGTGATTAAGNGAAAAAATGTTGTTAANAA ] [+] EMBL BI808855 [ TGATAAGACA CTGTTTTGTCGAGTTCAGAGGAAGC AAAGTTTCGCTGTTACAGCTCTGAATCTTGC GAGTAAAGTGTCTGAAATCATGTAGAGACTCTTCCTCTTTTGATTTTAGCTTCCTTTGTAGATGCAACGTCAGTTGCATCGATTGTGTGTGAAGTAAGCTTCACTCATAGTGTGAGGTCTGGTTGCTGTGATCAAGTGATTAAGCGAAAAAATGTTGTTAAAAAAAAAA] consensusID : consensus_14214#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 693 fasta sequence [GCACGACCAATTTCTTCCCTTTAAGAGGCTCCAGAAAATTGGTTTTGAAGGTTTTGGGAGCCAAAGCGCTTGCCGGGTCATGCCTATTCGGGCGTTCCCATCCCTGCTTAAATACCTGCGTTCTCAAGAGAGGCCCTGAGCCACCCCGGTCCTGCTGTTACTCGTTGCATTTCCTGGTACACCAGTCGTGCTTGCCAGACCTGGGATATGTATCTCAGCTTCCCACTCAAGGGAAGATCTTATTAAAGGATTGGAGGTTCTCAGCAAAGTTGGTGCCCTCGTGGGAATCAAATACTTCCCAGTGGAACATGAAAAGACTGCATCTGTTGAGAAACTGAAGAAGCTTCAATGAACCCCTCCAACCAGAAGAAATATACTGGGTGATCTAGGCAGTGTGCCATGCCTCGGTTCGGCTCATGTGCCTCGGACCCTTTTGATTTTCCTTTGTTTCTGAAGTGGCTTAGATCTGTACAGCTTGTATTATCATCCATCATAGTCCAAAACCCAACCCAATGATAAGACCCTGTTTTGTCGAGTTCAGAGGAAGCAAAAGTTTCGCTGTTACAGCTCTGAATCTTGCGAGTAAAGTGTCTGAAATCATGTAGAGACTCTTCCTCTTTTGATTTTAGCTTCCTTTGTAGATGCAACGTCAAGTTGCATCGNATTGTGTGTGAAGTAAAAAAAAAAAAAAAA] [-] EMBL CA763087 [GCACGACCAATTTCTTCCCTTTAAGAGGCTCCAGAAAATTGGTTTTGAAGGTTTTGGGAGCCAAAGCGCTTGCCGGGTCATGCCTATTCGGGCGTTCCCATCCCTGCTTAAATACCTGCGTTCTCAAGAGAGGCCCTGAGCCACCCCGGTCCTGCTGTTACTCGTTGCATTTCCTGGTACACCAGTCGTGCTTGCCAGACCTGGGATATGTATCTCAGCTTCCCACTCAAGGGAAGATCTTATTAAAGGATTGGAGGTTCTCAGCAAAGTTGGTGCCCTCGTGGGAATCAAATACTTCCCAGTGGAACATGAAAAGACTGCATCTGTTGAGAAACTGAAGAAGCTTCAATGAACCCCTCCAACCAGAAGAAATATACTGGGTGATCTAGGCAGTGTGCCATGCCTCGGTTCGGCTCATGTGCCTCGGACCCTTTTGATTTTCCTTTGTTTCTGAAGTGGCTTAGATCTGTACAGCTTGTATTATCATCCATCATAGTCCAAAACCCAACCCAATGATAAGACCCTGTTTTGTCGAGTTCAGAGGAAGCAAAAGTTTCGCTGTTACAGCTCTGAATCTTGCGAGTAAAGTGTCTGAAATCATGTAGAGACTCTTCCTCTTTTGATTTTAGCTTCCTTTGTAGATGCAACGTCAAGTTGCATCGNATTGTGTGTGAAGTAAAAAAAAAAAAAAAA] consensusID : consensus_14214#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 321 fasta sequence [GGAAAAGTTGGCCTTTAGGAACCTTGTTACCCAGCCTTTGNTATATTAATTCCAATCCCATTCCATTANTTCCCAAAACNCCAACACCAAATTGAATAGACACTGTTTTTGTCGAGTTCAGAGGAAGCAAAAGTTTCGCTGTTACAGCTCTGAATCTTGCGAGTAAAGTGTCTGAAATCATGTAGAGACTCTTCCTCTTTTGATTTTAGCTTCCTTTGTAGATGCAACGTCAGTTGCATCGATTGTGTGTGAAGTAAGCTTCACTCATAGTGTGAGGTCTGGTTGCTGTGATCAAGTGATTAAGCGAAAAAATGTTGTTAA] [+] EMBL AU088709 [GGAAAAGTTGGCCTTTAGGAACCTTGTTACCCAGCCTTTGNTATATTAATTCCAATCCCATTCCATTANTTCCCAAAACNCCAACACCAAATTGAATAGACACTGTTTTTGTCGAGTTCAGAGGAAGCAAAAGTTTCGCTGTTACAGCTCTGAATCTTGCGAGTAAAGTGTCTGAAATCATGTAGAGACTCTTCCTCTTTTGATTTTAGCTTCCTTTGTAGATGCAACGTCAGTTGCATCGATTGTGTGTGAAGTAAGCTTCACTCATAGTGTGAGGTCTGGTTGCTGTGATCAAGTGATTAAGCGAAAAAATGTTGTTAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14214#0 CCTAAGACTGTGACTCACTAGCTTGACACGAAGAAAATTCGAGGAAAAGAACACATTGAG 60 consensus_14214#1 ------------------------------------------------------------ consensus_14214#2 ------------------------------------------------------------ consensus_14214#0 CGATGCGATGCGATGTGATGGCGATGGCGTCATCCGAGCGCCGGTGACCGGCGACGGGGA 120 consensus_14214#1 ------------------------------------------------------------ consensus_14214#2 ------------------------------------------------------------ consensus_14214#0 CTCCTCCTCCGCCGCCGCCGCCGCCATCATCGTCGTCGTCGTTGCCGTCGATAATCCTGA 180 consensus_14214#1 ------------------------------------------------------------ consensus_14214#2 ------------------------------------------------------------ consensus_14214#0 CCCAGATCCGGCTAATTATATTATTACCCGATTCCAATCAGCTGCTAATCGAGTGGTAAT 240 consensus_14214#1 ------------------------------------------------------------ consensus_14214#2 ------------------------------------------------------------ consensus_14214#0 CTCCATCACATCACATCACAGCCTCGTTCGTTCGTCGCTGACGGCACATTATTATATCCT 300 consensus_14214#1 ------------------------------------------------------------ consensus_14214#2 ------------------------------------------------------------ consensus_14214#0 AGTATTATATTATTAATTAATCGCCGTCACCTCGTCGCCATTGACGACCTCTTCCTCTTC 360 consensus_14214#1 ------------------------------------------------------------ consensus_14214#2 ------------------------------------------------------------ consensus_14214#0 TTCCTCCTCCTCCTCTTCCACTCCCCCACCTCACCTCGCCGCTCGCCGTGGCGGCGGCTA 420 consensus_14214#1 ------------------------------------------------------------ consensus_14214#2 ------------------------------------------------------------ consensus_14214#0 TAAATACCACTCCACCTGCTGCCGTCGCCGCCGCCATAGCCTCCCATCCTCCCGCCGCCG 480 consensus_14214#1 ------------------------------------------------------------ consensus_14214#2 ------------------------------------------------------------ consensus_14214#0 CCGCCTGCATCGACGACGATGGTGAGGCTGCCCTACGTGACCGCGCTGACCACGCTCTTC 540 consensus_14214#1 ------------------------------------------------------------ consensus_14214#2 ------------------------------------------------------------ consensus_14214#0 AGCTACGGCCTCCTCTTCGCCTTCGGCCAGCTCCGCGACTTCTTCCGCAGGATCCTCGAC 600 consensus_14214#1 ------------------------------------------------------------ consensus_14214#2 ------------------------------------------------------------ consensus_14214#0 GCTGGCAAATCCAGCAATCTCAAGGGCTACGCGCCGATTTGCCTTGGGCTGGAGGATTTC 660 consensus_14214#1 ------------------------------------------------------------ consensus_14214#2 ------------------------------------------------------------ consensus_14214#0 TACACGCGCCGCCTCTATCTCCGCATCCAGGACTGTTTTGGCCGGCCAATTGCTAGCGCA 720 consensus_14214#1 ------------------------------------------------------------ consensus_14214#2 ------------------------------------------------------------ consensus_14214#0 CCAGATGCTTGGTTTGACGTGGTTGAGCGTTACTCAAATGACAGTAACAAGACACTGCAT 780 consensus_14214#1 ------------------------------------------------------------ consensus_14214#2 ------------------------------------------------------------ consensus_14214#0 CGTACCACAAAAACATCTAAGTGCCTTAACTTAGGTTCCTACAACTACCTTGGCTTTGCC 840 consensus_14214#1 ------------------------------------------------------------ consensus_14214#2 ------------------------------------------------------------ consensus_14214#0 GCGGCAGATGAATACTGCACCCCTCGTGTTATTGAGTCACTGAAGAAATACTCTGCTAGT 900 consensus_14214#1 ------------------------------------------------------------ consensus_14214#2 ------------------------------------------------------------ consensus_14214#0 ACTTGCAGTGTCCGAGTCGATGGGGGCAACACTAAGCTGCATGTGGAACTTGAAGAGCTG 960 consensus_14214#1 ------------------------------------------------------------ consensus_14214#2 ------------------------------------------------------------ consensus_14214#0 GTTGCAAGATTTGTTGGCAAGCCTGCAGCTATTCTTTTTGGCATGGGTTACGTGACGAAC 1020 consensus_14214#1 ------------------------------------------------------------ consensus_14214#2 ------------------------------------------------------------ consensus_14214#0 TCTGCAATCATTCCTGCCTTGGTTGGGAAGGGAGGACTCATAATTAGTGACTCATTGAAC 1080 consensus_14214#1 ------------------------------------------------------------ consensus_14214#2 ------------------------------------------------------------ consensus_14214#0 CATAACTCTATAGTGAATGGGGCTAGGGGTTCAGGAGCTACTGTTCGGGTTTTTCAACAT 1140 consensus_14214#1 ------------------------------------------------------------ consensus_14214#2 ------------------------------------------------------------ consensus_14214#0 AACAATCCTGCACACTTGGAAGAGGTATTGAGAGAGCAGATTGCAGGGGGCCAGCCTCGT 1200 consensus_14214#1 ------------------------------------------------------------ consensus_14214#2 ------------------------------------------------------------ consensus_14214#0 ACACACAGGCCGTGGAAGAAGATTATTGTGATTGTTGAGGGAATATATAGCATGGAGGGG 1260 consensus_14214#1 ------------------------------------------------------------ consensus_14214#2 ------------------------------------------------------------ consensus_14214#0 GAGCTATGCAAACTCCCTGAGGTTATAGCTGTCTGCAAGAAATATAAGGCTTACACATAT 1320 consensus_14214#1 ------------------------------------------------------------ consensus_14214#2 ------------------------------------------------------------ consensus_14214#0 TTAGACGAGGCACACAGTATTGGAGCTGTTGGTAAAACCGGGAGAGGTGTTTGTGAGCTA 1380 consensus_14214#1 ------------------------------------------------------------ consensus_14214#2 ------------------------------------------------------------ consensus_14214#0 CTAGGTGTGGATCCAGCTGATGTCGATATTATGATGGGAACATTTACTAAATCATTTGGA 1440 consensus_14214#1 ------------------------------------------------------------ consensus_14214#2 ------------------------------------------------------------ consensus_14214#0 TCATGCGGAGGTTACATTGCAGCATCAAAAGAGATTATTGATCATCTGAAGCACATATGC 1500 consensus_14214#1 ------------------------------------------------------------ consensus_14214#2 ------------------------------------------------------------ consensus_14214#0 CCTGCCCATATCTATGCAACATCCATGTCACCTCCAGCTGTTCAGCAGGTCATTTCTGCA 1560 consensus_14214#1 ------------------------------------------------------------ consensus_14214#2 ------------------------------------------------------------ consensus_14214#0 ATAAAAGTTATCCTTGGTGAAGATGGATCTAACAGAGGGGCCAAGAAGCTTGCTCAGATT 1620 consensus_14214#1 ------------------------------------------------------------ consensus_14214#2 ------------------------------------------------------------ consensus_14214#0 CGAGAGAACAGCAATTTCTTCCGTTCAGA--GCTTCAGAAAATGGGTTTTGAAGTTCTTG 1678 consensus_14214#1 ----GCACGACCAATTTCTTCCCTTTAAGAGGCTCCAGAAAATTGGTTTTGAAGGTTTTG 56 consensus_14214#2 ------------------------------------------------------------ consensus_14214#0 GAGAC--AATGACTCGCCGG-TCATGCCTAT-CATGCTTTACAATCC-TGCTAAAATACC 1733 consensus_14214#1 GGAGCCAAAGCGCTTGCCGGGTCATGCCTATTCGGGCGTTCCCATCCCTGCTTAAATACC 116 consensus_14214#2 ------------------------------------------------------------ consensus_14214#0 TGCGTTCTCAAGAGAGTGCCTGAGGCAACACGTTGCTGTTGTTACT-GTTGCATTTCCTG 1792 consensus_14214#1 TGCGTTCTCAAGAGAGGCCCTGAGCCACCCCGGTCCTGCTGTTACTCGTTGCATTTCCTG 176 consensus_14214#2 ------------------------------------------------------------ consensus_14214#0 CTACACCACTACTGCTTGCCAGAGCTAGGATATGTATCTCAGCTTCCCACTCAAGGGAAG 1852 consensus_14214#1 GTACACCAGTCGTGCTTGCCAGACCTGGGATATGTATCTCAGCTTCCCACTCAAGGGAAG 236 consensus_14214#2 ------------------------------------------------------------ consensus_14214#0 ATCTTATTAAAGGATTGGAGGTTATCAGCAAAGTTGGTGACCTCGTGGGAATCAAATACT 1912 consensus_14214#1 ATCTTATTAAAGGATTGGAGGTTCTCAGCAAAGTTGGTGCCCTCGTGGGAATCAAATACT 296 consensus_14214#2 ------------------------------------------------------------ consensus_14214#0 TCCCAGTGGAACATGAAAAGACTGCATCTGTTGAGAAACTGAAGAAGCTTCAATGAACAC 1972 consensus_14214#1 TCCCAGTGGAACATGAAAAGACTGCATCTGTTGAGAAACTGAAGAAGCTTCAATGAACCC 356 consensus_14214#2 ------------------------------------------------------------ consensus_14214#0 CTACAACCAGAAGAAATATACTGGGTGATCTAGGCAGTGTGCCATGCCTCGGTTCGGCTC 2032 consensus_14214#1 CTCCAACCAGAAGAAATATACTGGGTGATCTAGGCAGTGTGCCATGCCTCGGTTCGGCTC 416 consensus_14214#2 --------------------------------------------------GGAAAAGTTG 10 ** * * consensus_14214#0 ATGTGCCTCGGACCCTTTTGATTTTCCTTTGTTTCTGAAGTGGCTTAGATCTGTACAGCT 2092 consensus_14214#1 ATGTGCCTCGGACCCTTTTGATTTTCCTTTGTTTCTGAAGTGGCTTAGATCTGTACAGCT 476 consensus_14214#2 GCCT--TTAGGAACCTTGTTA-----CCCAGCCTTTGNTATA--TTAATTCCAATCCCAT 61 * * *** **** * * * * * ** * *** ** * * consensus_14214#0 TGTATTATCATCCATCATAGTCCAAAACACAACACAATGATA-GACACTGTTTT-GTCGA 2150 consensus_14214#1 TGTATTATCATCCATCATAGTCCAAAACCCAACCCAATGATAAGACCCTGTTTT-GTCGA 535 consensus_14214#2 TCCATTANTTCCCA--AAACNCCAACACCAAATTGAATA----GACACTGTTTTTGTCGA 115 * **** *** * * **** ** ** *** *** ******* ***** consensus_14214#0 GTTCAGAGGAAGCAAAAGTTTCGCTGTTACAGCTCTGAATCTTGCGAGTAAAGTGTCTGA 2210 consensus_14214#1 GTTCAGAGGAAGCAAAAGTTTCGCTGTTACAGCTCTGAATCTTGCGAGTAAAGTGTCTGA 595 consensus_14214#2 GTTCAGAGGAAGCAAAAGTTTCGCTGTTACAGCTCTGAATCTTGCGAGTAAAGTGTCTGA 175 ************************************************************ consensus_14214#0 AATCATGTAGAGACTCTTCCTCTTTTGATTTTAGCTTCCTTTGTAGATGCAACGTCA-GT 2269 consensus_14214#1 AATCATGTAGAGACTCTTCCTCTTTTGATTTTAGCTTCCTTTGTAGATGCAACGTCAAGT 655 consensus_14214#2 AATCATGTAGAGACTCTTCCTCTTTTGATTTTAGCTTCCTTTGTAGATGCAACGTCA-GT 234 ********************************************************* ** consensus_14214#0 TGCATCGA-TTGTGTGTGAAGTAAGCTTCACTCATAGTGTGAGGTCTGGTTGCTGTGATC 2328 consensus_14214#1 TGCATCGNATTGTGTGTGAAGTAAAAAAAAAAAAAAAA---------------------- 693 consensus_14214#2 TGCATCGA-TTGTGTGTGAAGTAAGCTTCACTCATAGTGTGAGGTCTGGTTGCTGTGATC 293 ******* *************** * * * consensus_14214#0 AAGTGATTAAGCGAAAAAATGTTGTTAAAAAAAAAA 2364 consensus_14214#1 ------------------------------------ consensus_14214#2 AAGTGATTAAGCGAAAAAATGTTGTTAA-------- 321 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||