These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14247#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 3025 fasta sequence [AGTCATTTAGGGCTAATGAAGCAATCGATCTTAGTGCAGGTCCATCTACATGTGCTAATTATTACAGCAAGACAGAGAGAAGTACACACAAGGCTCCATCTTACGAGAGATCTCATAGTGGGAACAAGAAATCGAGAGCAGGTGGTGCTATCCCTGAAGGAGATGTTAATGCTTCATCACAGGCTGCAGTTGCACGTGTTGTTAGGCAGCAGGGCATCGAAATCCCTGTTGATGCAGATGGTTTTATTGAAGTAAGGTCTAAGAGGCAGATCATGAGTGTCAGGAGAGAACTGAGGGAGAAAGAAAATAGATCCAAGATGAGGATAGCAAAGGCTCCCCGCAAACAGCATCAAGTTTCTCTGCACAGTTCTAGTAGTCCAAATTTGAACAAGGGAACTGTTTCTTTGGCAGAACCTGCAAAGAAAGCTTCTTTGGATTCTGTCATGGCTGTTGAAAGCAGAATCATTGACCCTGCTGAATCATCTGTTGCACTAAAGGGTGATAAAGCTTCCATGACACCCATAGGGCAACCTTTGGTCAACGCAGAATCTCATACAAACTACTACGCAAAGAAGCCTATCAATAGCCAGCCATCCTCAGATGCGGTCAATTCAGGAAAGCTCGTGACAAGCCTATCTGAAGAAAACAATAAAACGATGCCCATTAGCACTCCATTTAACATAGGCACCTGGGATAATTCACAATTAAACCAGCAGGTTATGCCATTAACTCAAACTCAACTTGAAGAAGCTATGAAACCAGGGAAGTTTGAACAAGCTGGTTCTGGCTTTTCTTTGGAGCCCAACAATGCTCTGTCTCCCACACTAGGTTCTGAAAAAACATTCCCTTCATCTGCTAGCCCTATTAATTCCCTTCTTGCCGGGGAGAAGATTCAGTTTGGAGCAGTTACCTCACCAACTGTACTGCCTCCAGTCAGCCGAACTATTACAAGTGGGCTTGGTCCTCCAGGTTCATCTAGGCCTGATATGAAGATTCATCGCAACTTGCCTGGTGATAGCAATAGTACTGCCATTTTGTTTGATAAGGAGACGTCTACAACAAAGGAACCATCACCAAACTCCGATGATGTTGAAGCTGAAGCTGAGGCTGAAGCAGCTGCCTCTGCTGTAGCTGTTGCAGCTATTAGTAGTGATGAGATAGTTGGATCTGGAGCTGATGCAACGGCAGCTTCTGCTTCAGACAACAAAAGTTTCGGCAATAAGAATCTTGCTGGATTAGCATCAGGAGGTCAATCATCCACAGATGAACCACTCAGCGTCGCTCTTCCAGCAGACTTGTCAGTTGATACTCCACCAATGTCCCTGTGGCACCCTCTGCCAAGTCCACAGGCATCAGGACCGATGCTTTCTCAATTTCCTGGTGCACAGCCATCCCACTTTTCCTGCTTTGAGATGAACACAATGTTAGGAGGGCAGATTTTTGCATTTGGACCAAGTGATGAATGTGCTGGTTCTCAGGTTCAGCAGCCTCAAAGAAGCAATGCTTTACCTTCAGCACCATTGGGAGCTTGGCCACAATGCCACTCTGGGGTTGAGTCATTTTATCGTCCTCCCACTGGGTTTGCTGGTCCTTTCATTAGCCCTGGAGGGATACCAGGCGTACAAGGTCCTCCACATATGGTGGTCTACAATCACTTTGCTCCTGTAGGGCAGTTTAGTCAAATGGGACTTGGTTTCATGGGAACCACTTATATTTCTGGTGACAAGCAGCCTGACTGGAAGCAAAACCAAGGACCTCCGGTTGTTGGTGTTAGCCAGAGTGATCCAAACAACCAAAATATGGTACCTGGTCAAGTAAGCTCGCCCAGTGTTCCTACTCCAGTACAGCATCTACGCCCAACCTCCATCATGCCAATTCCATCTCCACTGACCATGTTTGATATTGCTCCATTCCAGTCATCTACAGATATACAGATGCAGCCTTGTTGGCCACATATGCCTGTAGCACCACTACACACCGTCCCATTATCAGTGCCACTACAGCAGCATCCAATGGACGGCACAGCTGCAGCGCAGTTTGTTCATAACATCCAAGTGGACAACAAAGCGAGTTCGAATAACCGGTTCCAGGAGCCCTCTGCTTCTGTTGTTCCAGCAGATAACAGCAAGAACATTCCAAATGCATCTGCTACTCAGTTTACAGATGATTTAGGCCTTGTTGAACAGCCAGCCTCCACAAGTTCAAATGCTCAAACTGTTCAGCCTTCGTTTGCCCGGGTAGGCATGATCAGCAATGAAGTCCCAAACAGTGCCAAAGTTATGGGTAGGTCGTCGAACACACCAAATGTTAACCCTGGGATTGCTACAGGGGTCAGCAACTCAAATGGAAGTCAGGTTGCCAGCAT-GCCTTCCAAGCCCCACCAATCTTCATCATCATCGGGTCAACAGTACCAACATCAAGTTAATAATCAAGATCGTC-GGTCTCGGGTGACCCAAAAGACTGGAGCTGTCAATGAATGGCAACGCCGTTCAGGATACCAGGGAAGGAATCAAAATTCCGGTTCTGACAAGAACTTGGGCACTGGTAGGATGAAGCAGATCTATGTTGCAAAATCATCATCAGCAAGTGGCCATGCCCCATCTGGTTAGAAGCACAAATGCTCTTTTGCAAAGCCTGCGTCAATCAGGAGGCCGCAACAGCTCGACTCGAGCATATTTGCACCAGACACATGCGAAATGTGTTGTCACTCCATGTCTGTCTATCCTTTTTGTTTTCTTTGGCGATTATAGCCTGTGCTGATCATTTATCTATTTTTGGTTCATTGTCTTGCATAGAGAAAAGAAAAAGGTAGTGTGGTTGCAGTGTCAAAACTTTATAGTGATATCGTGACATGCCTGGATAAAATTTGCAACCTTCAAAATATGCTGTTGTGTAAGTCGATGGTGTGCCGTCTGAATTGTTAATACTATTATCATTATCATTATTA-TTTTTCCGGA-C-TCTGGAGGTTTAAACAGCCTCGGAGATTGCTATAATAGGGATGAAAACATGCCCCTGTAAAAGAGAA] [+] EMBL CB638306 [AGTCATTTAGGGCTAATGAAGCAATCGATCTTAGTGCAGGTCCATCTACATGTGCTAATTATTACAGCAAGACAGAGAGAAGTACACACAAGGCTCCATCTTACGAGAGATCTCATAGTGGGAACAAGAAATCGAGAGCAGGTGGTGCTATCCCTGAAGGAGATGTTAATGCTTCATCACAGGCTGCAGTTGCACGTGTTGTTAGGCAGCAGGGCATCGAAATCCCTGTTGATGCAGATGGTTTTATTGAAGTAAGGTCTAAGAGGCAGATCATGAGTGTCAGGAGAGAACTGAGGGAGAAAGAAAATAGATCCAAGATGAGGATAGCAAAGGCTCCCCGCAAACAGCATCAAGTTTCTCTGCACAGTTCTAGTAGTCCAAATTTGAACAAGGGAACTGTTTCTTTGGCAGAACCTGCAAAGAAAGCTTCTTTGGATTCTGTCATGGCTGTTGAAAGCAGAATCATTGACCCTGCTGAATCATCTGTTGCACTAAAGGGTGATAAAGCTTCCATGACACCCATAGGGCAACCTTTGGTCAACGCAGAATCTCATACAA ] [+] EMBL AK063311 [ CCGCAAACAGCATCAAGTTTCTCTGCACAGTTCTAGTAGTCCAAATTTGAACAAGGGAACTGTTTCTTTGGCAGAACCTGCAAAGAAAGCTTCTTTGGATTCTGTCATGGCTGTTGAAAGCAGAATCATTGACCCTGCTGAATCATCTGTTGCACTAAAGGGTGATAAAGCTTCCATGACACCCATAGGGCAACCTTTGGTCAACGCAGAATCTCATACAAACTACTACGCAAAGAAGCCTATCAATAGCCAGCCATCCTCAGATGCGGTCAATTCAGGAAAGCTCGTGACAAGCCTATCTGAAGAAAACAATAAAACGATGCCCATTAGCACTCCATTTAACATAGGCACCTGGGATAATTCACAATTAAACCAGCAGGTTATGCCATTAACTCAAACTCAACTTGAAGAAGCTATGAAACCAGGGAAGTTTGAACAAGCTGGTTCTGGCTTTTCTTTGGAGCCCAACAATGCTCTGTCTCCCACACTAGGTTCTGAAAAAACATTCCCTTCATCTGCTAGCCCTATTAATTCCCTTCTTGCCGGGGAGAAGATTCAGTTTGGAGCAGTTACCTCACCAACTGTACTGCCTCCAGTCAGCCGAACTATTACAAGTGGGCTTGGTCCTCCAGGTTCATCTAGGCCTGATATGAAGATTCATCGCAACTTGCCTGGTGATAGCAATAGTACTGCCATTTTGTTTGATAAGGAGACGTCTACAACAAAGGAACCATCACCAAACTCCGATGATGTTGAAGCTGAAGCTGAGGCTGAAGCAGCTGCCTCTGCTGTAGCTGTTGCAGCTATTAGTAGTGATGAGATAGTTGGATCTGGAGCTGATGCAACGGCAGCTTCTGCTTCAGACAACAAAAGTTTCGGCAATAAGAATCTTGCTGGATTAGCATCAGGAGGTCAATCATCCACAGATGAACCACTCAGCGTCGCTCTTCCAGCAGACTTGTCAGTTGATACTCCACCAATGTCCCTGTGGCACCCTCTGCCAAGTCCACAGGCATCAGGACCGATGCTTTCTCAATTTCCTGGTGCACAGCCATCCCACTTTTCCTGCTTTGAGATGAACACAATGTTAGGAGGGCAGATTTTTGCATTTGGACCAAGTGATGAATGTGCTGGTTCTCAGGTTCAGCAGCCTCAAAGAAGCAATGCTTTACCTTCAGCACCATTGGGAGCTTGGCCACAATGCCACTCTGGGGTTGAGTCATTTTATCGTCCTCCCACTGGGTTTGCTGGTCCTTTCATTAGCCCTGGAGGGATACCAGGCGTACAAGGTCCTCCACATATGGTGGTCTACAATCACTTTGCTCCTGTAGGGCAGTTTAGTCAAATGGGACTTGGTTTCATGGGAACCACTTATATTTCTGGTGACAAGCAGCCTGACTGGAAGCAAAACCAAGGACCTCCGGTTGTTGGTGTTAGCCAGAGTGATCCAAACAACCAAAATATGGTACCTGGTCAAGTAAGCTCGCCCAGTGTTCCTACTCCAGTACAGCATCTACGCCCAACCTCCATCATGCCAATTCCATCTCCACTGACCATGTTTGATATTGCTCCATTCCAGTCATCTACAGATATACAGATGCAGCCTTGTTGGCCACATATGCCTGTAGCACCACTACACACCGTCCCATTATCAGTGCCACTACAGCAGCATCCAATGGACGGCACAGCTGCAGCGCAGTTTGTTCATAACATCCAAGTGGACAACAAAGCGAGTTCGAATAACCGGTTCCAGGAGCCCTCTGCTTCTGTTGTTCCAGCAGATAACAGCAAGAACATTCCAAATGCATCTGCTACTCAGTTTACAGATGATTTAGGCCTTGTTGAACAGCCAGCCTCCACAAGTTCAAATGCTCAAACTGTTCAGCCTTCGTTTGCCCGGGTAGGCATGATCAGCAATGAAGTCCCAAACAGTGCCAAAGTTATGGGTAGGTCGTCGAACACACCAAATGTTAACCCTGGGATTGCTACAGGGGTCAGCAACTCAAATGGAAGTCAGGTTGCCAGCAT GCCTTCCAAGCCCCACCAATCTTCATCATCATCGGGTCAACAGTACCAACATCAAGTTAATAATCAAGATCGTC GGTCTCGGGTGACCCAAAAGACTGGAGCTGTCAATGAATGGCAACGCCGTTCAGGATACCAGGGAAGGAATCAAAATTCCGGTTCTGACAAGAACTTGGGCACTGGTAGGATGAAGCAGATCTATGTTGCAAAATCATCATCAGCAAGTGGCCATGCCCCATCTGGTTAGAAGCACAAATGCTCTTTTGCAAAGCCTGCGTCAATCAGGAGGCCGCAACAGCTCGACTCGAGCATATTTGCACCAGACACATGCGAAATGTGTTGTCACTCCATGTCTGTCTATCCTTTTTGTTTTCTTTGGCGATTATAGCCTGTGCTGATCATTTATCTATTTTTGGTTCATTGTCTTGCATAGAGAAAAGAAAAAGGTAGTGTGGTTGCAGTGTCAAAACTTTATAGTGATATCGTGACATGCCTGGATAAAATTTGCAACCTTCAAAATATGCTGTTGTGTAAGTCGATGGTGTGCCGTCTGAATTGTTAATACTATTATCATTATCATTATTA TTTTTCCGGA C TCTGGAGGTTTAAACAGCCTCGGAGATTGCTATAATAGGGATGAAAACAT ] [+] EMBL CB628422 [ ACGCCTTATCTCATACAAACTACTACGCAAAGAAGCCTATCAATAGCCAGCCATCCTCAGATGCGGTCAATTCAGGAAAGCTCGTGACAAGCCTATCTGAAGAAAACAATAAAACGATGCCCATTAGCACTCCATTTAACATAGGCACCTGGGATAATTCACAATTAAACCAGCAGGTTATGCCATTAACTCAAACTCAACTTGAAGAAGCTATGAAACCAGGGAAGTTTGAACAAGCTGGTTCTGGCTTTTCTTTGGAGCCCAACAATGCTCTGTCTCCCACACTAGGTTCTGAAAAAGCATTCCCTTCATCTGCTAGCCCTATTAATTCCCTTCTTGCCGGGGAGAAGATTCAGTTTGGAGCAGTTACCTCACCAACTGTACTGCCTCCAGTCAGCCGAACTATTACAAGTGGGCTTGGTCCTCCAGGTTCATCTAGGCCTGATATGAAGATTGATCGCAACTTGCCTGGTGATAGCAATAGTACTGCCATTTTGTTTGATAAGGAGACGTCTACAACAAAGGAACCATCACCAAACTCCGATGATGTTGAAGCTGAAGCTGAGGCTGAAGCAGCTGCCTCTGCTGTGGCTGTTGCAGCTATTAGTAGTGATGAGATAGTTGGATCTGGAGCTGATGCAACGGCAGCTTCTGCTTCAGACAACAAAAGTTTCGGCAATAAGAATCTTGCTGGATTAGCATCAGGAGGTCAATCATCCACAGATGAACCACTCAGCGTCGCTCTTCCAGCAGACTTGTCAGTTGATACTCCACCAATGTCCCTGTGGCACCCTCTGCCAAGT ] [+] EMBL CA755496 [ CCTTCATCTGCTAGCCCTATTAATTCCCTTCTTGCCGGGGAGAAGATTCAGTTTGGAGCAGTTACCTCACCAACTGTACTGCCTCCAGTCAGCCGAACTATTACAAGTGGGCTTGGTCCTCCAGGTTCATCTAGGCCTGATATGAAGATTCATCGCAACTTGCCTGGTGATAGCAAGAGTACTGCCATTTTGTTTGATAAGGAGACGTCTACNACAAAGGAACCATCACCAAACTCCGATGATGTTGAAGCTGAAGCTGAGGCTGAAGCAGCTGCCTCTGCTGTAGCTGTTGCAGCTATTAGTAAGGATGAGATAGTTGGAGCTGGAGCTGATGCAACGGCAGCTTCTGCTTCAGACAACAAAAGTTTCGGCAATAAGAATCTTGCTGGATTAGCATCAGGAGGTCAATCATCCACAGATGAACCACTCAGCGTCGCTCTTCCAGCAGACTTGTCAGTTGATACTCCACCAATGTCCCTGTGGCACCCTCTGCCAAGTCCACAGGCATCAGGACCGATGCTTTCTCAATTTCCTGGTGCACAGCCATCCCACTTTTCCTGCTTTGAGATG ACACAATGTTAGGAGGGCAGA TTTTGCATTTGGACC AGTGA ] [+] EMBL CF322610 [ ATTTCCTGGTGCACAGCCATCCCACTTTTCCTGCTTTGAGATGAACACAATGTTAGGAGGGCAGATTTTTGCATTTGGACCAAGTGATGAATGTGCTGGTTCTCAGGTTCAGCAGCCTCAAAGAAGCAATGCTTTACCTTCAGCACCATTGGGAGCTTGGCCACAATGCCACTCTGGGGTTGAGTCATTTTATCGTCCTCCCACTGGGTTTGCTGGTCCTTTCATTAGCCCTGGAGGGATACCAGGCGTACAAG ] [+] EMBL CF311276 [ ATGCCAATTCCATCTCCACTGACCATGTTTGATATTGCTCCATTCCAGTCATCTACAGATATACAGATGCATCCTTGTTGGCCACATATGCCTGTAGCACCACTACACACCGTCCCATTATCAGTGCCACTACAGCAGCATCCAATGGACGGCACAGCTGCAGCGCAGTTTGTTCATAACATCCAAGTGGACAACAAAGCGAGTTCGAATAACCGGTTCCAGGAGCCCTCTGCTTCTGTTGTTCCAGCAGATAACAGCATGAACATTCCAAATGCATCTGCTACTCAGTTTACAGATGATTTAGGCCTTGTTGAACAGCCAGCCTCCACAAGTTCAAATGCTCAAACTGTTCAGCCTTCGTTTGCCCGGGTAGGCATGATCAGCAATGAAGTCCCAAACAGTGCCAAAGTTATGGGTAGGTCGTCGAACACACCAAATGTTAACCCTGGGATTGCTACAGGGGTCAGCAACTCAAATGGAAGTCAGGTTGCCAGCAT GCCTTCCAAGCCCCACCAATCTTCATCATCATCGGGTCAACAGTACCAACATCAAGTTAATAATCAAGATCGTC GGTCTCGGGTGACCCAAAAGACTGGAGCTGTCAATGAATGGC ] [-] EMBL CB628423 [ CAGCAAGAACATTCCAAATGCATCTGCTACTCGGTTCACAGATGATTTAGGCCTTGTTGAACAGCCAGCCTCCACAAGTTCAAATGCTCAAACTGTTCAGCCTTCGTTTGCCCGGGTAGGCATGATCAGCAATGAAGTCCCAAACAGTGCCAAAGTTATGGGTAGGTCGTCGAACACACCAAATGTTAACCCTGGGATTGCTACAGGGGTCAGCAACTCAAATGGAAGTCAGGTTGCCAGCAT GCCTTCCAAGCCCCACCAATCTTCATCATCATCGGGTCAACAGTACCAACATCAAGTTAATAATCAAGATCGTC GGTCTCGGGTGACCCAAAAGACTGGAGCTGTCAATGAATGGCAACGCCGTTCAGGATACCAGGGAAGGAATCAAAATTCCGGTTCTGACAAGAACTTGGGCACTGGTAGGATGAAGCAGATCTATGTTGCAAAATCATCATCAGCAAGTGGCCATGCCCCATCTGGTTAGAAGCACAAATGCTCTTTTGCAAAGCCTGCGTCAATCAGGAGGCCGCAACAGCTCGACTCGAGCATATTTGCACCAGACACATGCGAAATGTGTTGTCACTCCATGTCTGTCTATCCTTTTTGTTTTCTTTGGCGATTATAGCCTGTGCTGATCATTTATCTATTTTTGGTTCATTGTCTTGCATAGAGAAAAGAAAAAGGGAGTGTGGTTGCAGTGTCAAAACTTTATAGTGATATCGTGACATGCCTGGATAAAATTTGCAACCTTCAAAATATGCTGTTGTGTAAGTCGATGGTGTGCCGTCTGAATTGTTAATACTATTATCATTATCATTATTA TTTTTCCGGAGC TCTGGAGGTTTAAACAGCCTCGGAGATTGCTA ] [-] EMBL CB664100 [ CTACAGGGGTCAGCAACTCAAATGGAAGTCAGGTTGCCAGCAT GCCTTCCAAGCCCCACCAATCTTCATCATCATCGGGTCAACAGTACCAACATCAAGTTAATAATCAAGATCGTC GGTCTCGGGTGACCCAAAAGACTGGAGCTGTCAATGAATGGCAACGCCGTTCAGGATACCAGGGAAGGAATCAAAATTCCGGTTCTGACAAGAACTTGGGCACTGGTAGGATGAAGCAGATCTATGTTGCAAAATCATCATCAGCAAGTGGCCATGCCCCATCTGGTTAGAAGCACAAATGCTCTTTTGCAAAGCCTGCGTCAATCAGGAGGCCGCAACAGCTCGACTCGAGCATATTTGCACCAGACACATGCGAAATGTGTTGTCACTCCATGTCTGTCTATCCTTTTTGTTTTCTTTGGCGATTATAGCCTGTGCTGATCATTTATCTATTTTTGGTTCATTGTCTTGCATAGAGAAAAGAAAAAGGTAGTGTGGTTGCAGTGTCAAAACTTTATAGTGATATCGTGACATGCCTGGATAAAATTTGCAACCTTCAAAATATGCTGTTGTGTAAGTCGATGGTGTGCCGTCTGAATTGTTA ] [+] EMBL CA998424 [ GGTTGCCAGCATGGCCTTCCAAGCCCCACCAATCTTCATCATCATCGGGTCAACAGTACCAACATCAAGTTAATAATCAAGATCGTC GGTCTCGGGTGACCCAAAAGACTGGAGCTGTCAATGAATGGCAACGCCGTTCAGGATACCAGGGAAGGAATCAAAATTCCGGTTCTGACAAGAACTTGGGCACTGGTAGGATGAAGCAGATCTATGTTGCAAAATCATCATCAGCAAGTGGCCATGCCCCATCTGGTTAGAAGCACAAATGCTCTTTTGCAAAGCCTGCGTCAATCAGGAGGCCGCAACAGCTCGACTCGAGCATATTTGCACCAGACACATGCGAAATGTGTTGTCACTCCATGTCTGTCTATCCTTTTTGTTTTCTTTGGCGATTATAGCCTGTGCTGATCATTTATCTATTTTTGGTTCATTGTCTTGCATAGAGAAAAGAAAAAGGGAGTGTGGTTGCAGTGTCAAAACTTTATAGTGATATCGTGACATGCCTGGATAAAATTTGCA ] [-] EMBL CF311277 [ CGGGTCAACAGTACCAACATCAAGTTAATAATCAAGATCGTC GGTCTCGGGTGACCCAAAAGACTGGAGCTGTCAATGAATGGCAACGCCGTTCAGGATACCAGGGAAGGAATCAAAATTCCGGTTCTGACAAGAACTTGGGCACTGGTAGGATGAAGCAGATCTATGTTGCAAAATCATCATCAGCAAGTGGCCATGCCCCATCTGGTTAGAAGCACAAATGCTCTTTTGCAAAGCCTGCGTCAATCAGGAGGCCGCAACAGCTCGACTCGAGCATATTTGCACCAGACACATGCGAAATGTGTTGTCACTCCATGTCTGTCTATCCTTTTTGTTTTCTTTGGCGATTATAGCCTGTGCTGATCATTTATCTATTTTTGGTTCATTGTCTTGCATAGAGAAAAGAAAAAGGTAGTGTGGTTGCAGTGTCAAAACTTTATAGTGATATCGTGACATGCCTGGATAAAAaaaa ] [-] EMBL CB677926 [ AATCAAGATCGTCGGGTCTCGGGTGACCCAAAAGACTGGAGCTGTCAATGAATGGCAACGCCGTTCAGGATACCAGGGAAGGAATCAAAATTCCGGTTCTGACAAGAACTTGGGCACTGGTAGGATGAAGCAGATCTATGTTGCAAAATCATCATCAGCAAGTGGCCATGCCCCATCTGGTTAGAAGCACAAATGCTCTTTTGCAAAGCCTGCGTCAATCAGGAGGCCGCAACAGCTCGACTCGAGCATATTTGCACCAGACACATGCGAAATGTGTTGTCACTCCATGTCTGTCTATCCTTTTTGTTTTCTTTGGCGATTATAGCCTGTGCTGATCATTTATCTATTTTTGGTTCATTGTCTTGCATAGAGAAAAGAAAAAGGTAGTGTGGTTGCAGTGTCAAAACTTTATAGTGATATCGTGACATGCCTGGATAAAATTTGCAACCTTCAAAATATGCTGTTGTGTAAGTCGATGGTGTGCCGTCTGAATTGTTAATACTATTATCATTATCATTATTA TTTTTCCGGA C TCTGGAGGTTTAAACAGCCTAGGAGATTGCTATAATAGGGATGAAAACATGCCCCTGTAAAAGAGAA] [-] EMBL CB638307 [ CAACGCCGTTCAGGATACCAGGGAAGGAATCAAAATTCCGGTTTTGACAAGAACTTGGGCACTGGTAGGATGAAGCAGATTTATGTTGCAAAATCATCATCAGCAAGTGGCCATGCCCCATCTGGTTAGAAGCACAAATGCTTTTTTGCAAAGCCTGGGTCAATCAGGAGGCCGCAACAGCTCGACTCGAGCATATTTGCACCAGACACATGCGAAATGTGTTGTCACTCCATGTCTGTCTATCCTTTTTGTTTTCTTTGGCGATTATAGCCTGTGCTGATCATTTATCTATTTTTGGTTCATTGTCTTGCATAGAGAAAAGAAAAAGGTAGTGTGGTTGCAGTGTCAAAACTTTATAGTGATATCGTGACATGCCTGGATAAAATTTGCAACCTTCAAAATATGCTGTTGTGTAAGTCGATGGTGTGCCGTTTGAATTGTTAATACTATTATCATTATCATTATTATTTTTTCCGGA CTTCTGGAGGTTTAAACAGCCTCGGAGATTGCTATAATAGGGATGAAAACA ] consensusID : consensus_14247#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 491 fasta sequence [ACCCGTTCAGGATACCACGGGAAGGAATCCAAATTCCGGTTCTGACACAGAACTTGGGCACTGGTAGGATGAACCAGATCTATGTTGCCAAATCATCATCAGCAAGTGGCCATGCCCCATCTGGTTAGAAGCCCCAATGCTCTTTTGCACAAGCCTGCGTCCATCACGGAGGCCGCAACAGCTCGACTCGAGCATATTTGCACCAGACACCACTGCGAAATGTGTTGTCACTCCATGTCTGTCTATCCTTTTTGTNTTCTTTGGCGATTATAGCCTGTGCTGATCACTTTATCTATTTTTGGTTCACTTGTCTTGCANTAGAGAAAAGAAAAAGGGAGTGTGGTTGCCACGTGTCCAAACTTTATAGTGATATTCGTGACCACTGCCTGGATAAAATTTGCACCTTCCAAATATGCTGTTGTGTAAGTCGATGGTGTGCCGTCTGAATTGTTAATACTATTATCATTATCATTATTATTACAAAAAAAAAA] [+] EMBL BM421844 [ACCCGTTCAGGATACCACGGGAAGGAATCCAAATTCCGGTTCTGACACAGAACTTGGGCACTGGTAGGATGAACCAGATCTATGTTGCCAAATCATCATCAGCAAGTGGCCATGCCCCATCTGGTTAGAAGCCCCAATGCTCTTTTGCACAAGCCTGCGTCCATCACGGAGGCCGCAACAGCTCGACTCGAGCATATTTGCACCAGACACCACTGCGAAATGTGTTGTCACTCCATGTCTGTCTATCCTTTTTGTNTTCTTTGGCGATTATAGCCTGTGCTGATCACTTTATCTATTTTTGGTTCACTTGTCTTGCANTAGAGAAAAGAAAAAGGGAGTGTGGTTGCCACGTGTCCAAACTTTATAGTGATATTCGTGACCACTGCCTGGATAAAATTTGCACCTTCCAAATATGCTGTTGTGTAAGTCGATGGTGTGCCGTCTGAATTGTTAATACTATTATCATTATCATTATTATTACAAAAAAAAAA] consensusID : consensus_14247#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 482 fasta sequence [AAGTTAATAATCAAGATCGTCGGTCTCGGGTGACCCAAAAGACTGGAGCTGTCAATGAATGGCAACGCCGTTCAGGATACCAGGGAAGGAATCAAAATTCCGGTTCTGACAAGAACTTGGGCACTGGTAGGATGAAGCAGATCTATGTTGCAAAATCATCATCAGCAAGTGGCCATGCCCCATCTGGTTAGAAGCACAAATGCTCTTTTGCAAAGCCTGCGTCAATCAGGAGGCCGCAACAGCTCGACTCGAGCATATTTGCACCAGACACATGCGAAATGTGTTGTCACTCCATGTCTGTCTATCCTTTTTGTTTTCTTTGGCGATTATAGCCTGTGCTGATCATTTATCTATTTTTGGTTCATTGTCTTGCATAGAGAAAAGAAAAAGGTAGTGTGGTTGCAGTGTCAAAACTTTATAGTGATATCGTGACATGCCTGGATAAAATTTGCAACCTGCAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CA882858 [AAGTTAATAATCAAGATCGTCGGTCTCGGGTGACCCAAAAGACTGGAGCTGTCAATGAATGGCAACGCCGTTCAGGATACCAGGGAAGGAATCAAAATTCCGGTTCTGACAAGAACTTGGGCACTGGTAGGATGAAGCAGATCTATGTTGCAAAATCATCATCAGCAAGTGGCCATGCCCCATCTGGTTAGAAGCACAAATGCTCTTTTGCAAAGCCTGCGTCAATCAGGAGGCCGCAACAGCTCGACTCGAGCATATTTGCACCAGACACATGCGAAATGTGTTGTCACTCCATGTCTGTCTATCCTTTTTGTTTTCTTTGGCGATTATAGCCTGTGCTGATCATTTATCTATTTTTGGTTCATTGTCTTGCATAGAGAAAAGAAAAAGGTAGTGTGGTTGCAGTGTCAAAACTTTATAGTGATATCGTGACATGCCTGGATAAAATTTGCAACCTGCAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU032079 [ AATCAAGATCGTCGGTCTCGGGTGACCCAAAAGACTGGAGCTGTCAATGAATGGCAACG CGTTCAGGATACCAGGGAAGNAATCAAAATTCCGGTTCTGACAAGAACTTNGGCACTGGTAGGATGAAGCAGATCTATGTTGCAAAATCATCATCAGCAAGTGGCCATGCCCCATCTGGTTAGAAGCACAAATGCTCTTTTNCAAAGCCTGCGTCAATCAGGNGGCCGCAACAGCTCGACTCGAGCATATTTGCACCAGACACATGCGAAATGTGTTGTCACTCCATGTCT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14247#0 AGTCATTTAGGGCTAATGAAGCAATCGATCTTAGTGCAGGTCCATCTACATGTGCTAATT 60 consensus_14247#2 ------------------------------------------------------------ consensus_14247#1 ------------------------------------------------------------ consensus_14247#0 ATTACAGCAAGACAGAGAGAAGTACACACAAGGCTCCATCTTACGAGAGATCTCATAGTG 120 consensus_14247#2 ------------------------------------------------------------ consensus_14247#1 ------------------------------------------------------------ consensus_14247#0 GGAACAAGAAATCGAGAGCAGGTGGTGCTATCCCTGAAGGAGATGTTAATGCTTCATCAC 180 consensus_14247#2 ------------------------------------------------------------ consensus_14247#1 ------------------------------------------------------------ consensus_14247#0 AGGCTGCAGTTGCACGTGTTGTTAGGCAGCAGGGCATCGAAATCCCTGTTGATGCAGATG 240 consensus_14247#2 ------------------------------------------------------------ consensus_14247#1 ------------------------------------------------------------ consensus_14247#0 GTTTTATTGAAGTAAGGTCTAAGAGGCAGATCATGAGTGTCAGGAGAGAACTGAGGGAGA 300 consensus_14247#2 ------------------------------------------------------------ consensus_14247#1 ------------------------------------------------------------ consensus_14247#0 AAGAAAATAGATCCAAGATGAGGATAGCAAAGGCTCCCCGCAAACAGCATCAAGTTTCTC 360 consensus_14247#2 ------------------------------------------------------------ consensus_14247#1 ------------------------------------------------------------ consensus_14247#0 TGCACAGTTCTAGTAGTCCAAATTTGAACAAGGGAACTGTTTCTTTGGCAGAACCTGCAA 420 consensus_14247#2 ------------------------------------------------------------ consensus_14247#1 ------------------------------------------------------------ consensus_14247#0 AGAAAGCTTCTTTGGATTCTGTCATGGCTGTTGAAAGCAGAATCATTGACCCTGCTGAAT 480 consensus_14247#2 ------------------------------------------------------------ consensus_14247#1 ------------------------------------------------------------ consensus_14247#0 CATCTGTTGCACTAAAGGGTGATAAAGCTTCCATGACACCCATAGGGCAACCTTTGGTCA 540 consensus_14247#2 ------------------------------------------------------------ consensus_14247#1 ------------------------------------------------------------ consensus_14247#0 ACGCAGAATCTCATACAAACTACTACGCAAAGAAGCCTATCAATAGCCAGCCATCCTCAG 600 consensus_14247#2 ------------------------------------------------------------ consensus_14247#1 ------------------------------------------------------------ consensus_14247#0 ATGCGGTCAATTCAGGAAAGCTCGTGACAAGCCTATCTGAAGAAAACAATAAAACGATGC 660 consensus_14247#2 ------------------------------------------------------------ consensus_14247#1 ------------------------------------------------------------ consensus_14247#0 CCATTAGCACTCCATTTAACATAGGCACCTGGGATAATTCACAATTAAACCAGCAGGTTA 720 consensus_14247#2 ------------------------------------------------------------ consensus_14247#1 ------------------------------------------------------------ consensus_14247#0 TGCCATTAACTCAAACTCAACTTGAAGAAGCTATGAAACCAGGGAAGTTTGAACAAGCTG 780 consensus_14247#2 ------------------------------------------------------------ consensus_14247#1 ------------------------------------------------------------ consensus_14247#0 GTTCTGGCTTTTCTTTGGAGCCCAACAATGCTCTGTCTCCCACACTAGGTTCTGAAAAAA 840 consensus_14247#2 ------------------------------------------------------------ consensus_14247#1 ------------------------------------------------------------ consensus_14247#0 CATTCCCTTCATCTGCTAGCCCTATTAATTCCCTTCTTGCCGGGGAGAAGATTCAGTTTG 900 consensus_14247#2 ------------------------------------------------------------ consensus_14247#1 ------------------------------------------------------------ consensus_14247#0 GAGCAGTTACCTCACCAACTGTACTGCCTCCAGTCAGCCGAACTATTACAAGTGGGCTTG 960 consensus_14247#2 ------------------------------------------------------------ consensus_14247#1 ------------------------------------------------------------ consensus_14247#0 GTCCTCCAGGTTCATCTAGGCCTGATATGAAGATTCATCGCAACTTGCCTGGTGATAGCA 1020 consensus_14247#2 ------------------------------------------------------------ consensus_14247#1 ------------------------------------------------------------ consensus_14247#0 ATAGTACTGCCATTTTGTTTGATAAGGAGACGTCTACAACAAAGGAACCATCACCAAACT 1080 consensus_14247#2 ------------------------------------------------------------ consensus_14247#1 ------------------------------------------------------------ consensus_14247#0 CCGATGATGTTGAAGCTGAAGCTGAGGCTGAAGCAGCTGCCTCTGCTGTAGCTGTTGCAG 1140 consensus_14247#2 ------------------------------------------------------------ consensus_14247#1 ------------------------------------------------------------ consensus_14247#0 CTATTAGTAGTGATGAGATAGTTGGATCTGGAGCTGATGCAACGGCAGCTTCTGCTTCAG 1200 consensus_14247#2 ------------------------------------------------------------ consensus_14247#1 ------------------------------------------------------------ consensus_14247#0 ACAACAAAAGTTTCGGCAATAAGAATCTTGCTGGATTAGCATCAGGAGGTCAATCATCCA 1260 consensus_14247#2 ------------------------------------------------------------ consensus_14247#1 ------------------------------------------------------------ consensus_14247#0 CAGATGAACCACTCAGCGTCGCTCTTCCAGCAGACTTGTCAGTTGATACTCCACCAATGT 1320 consensus_14247#2 ------------------------------------------------------------ consensus_14247#1 ------------------------------------------------------------ consensus_14247#0 CCCTGTGGCACCCTCTGCCAAGTCCACAGGCATCAGGACCGATGCTTTCTCAATTTCCTG 1380 consensus_14247#2 ------------------------------------------------------------ consensus_14247#1 ------------------------------------------------------------ consensus_14247#0 GTGCACAGCCATCCCACTTTTCCTGCTTTGAGATGAACACAATGTTAGGAGGGCAGATTT 1440 consensus_14247#2 ------------------------------------------------------------ consensus_14247#1 ------------------------------------------------------------ consensus_14247#0 TTGCATTTGGACCAAGTGATGAATGTGCTGGTTCTCAGGTTCAGCAGCCTCAAAGAAGCA 1500 consensus_14247#2 ------------------------------------------------------------ consensus_14247#1 ------------------------------------------------------------ consensus_14247#0 ATGCTTTACCTTCAGCACCATTGGGAGCTTGGCCACAATGCCACTCTGGGGTTGAGTCAT 1560 consensus_14247#2 ------------------------------------------------------------ consensus_14247#1 ------------------------------------------------------------ consensus_14247#0 TTTATCGTCCTCCCACTGGGTTTGCTGGTCCTTTCATTAGCCCTGGAGGGATACCAGGCG 1620 consensus_14247#2 ------------------------------------------------------------ consensus_14247#1 ------------------------------------------------------------ consensus_14247#0 TACAAGGTCCTCCACATATGGTGGTCTACAATCACTTTGCTCCTGTAGGGCAGTTTAGTC 1680 consensus_14247#2 ------------------------------------------------------------ consensus_14247#1 ------------------------------------------------------------ consensus_14247#0 AAATGGGACTTGGTTTCATGGGAACCACTTATATTTCTGGTGACAAGCAGCCTGACTGGA 1740 consensus_14247#2 ------------------------------------------------------------ consensus_14247#1 ------------------------------------------------------------ consensus_14247#0 AGCAAAACCAAGGACCTCCGGTTGTTGGTGTTAGCCAGAGTGATCCAAACAACCAAAATA 1800 consensus_14247#2 ------------------------------------------------------------ consensus_14247#1 ------------------------------------------------------------ consensus_14247#0 TGGTACCTGGTCAAGTAAGCTCGCCCAGTGTTCCTACTCCAGTACAGCATCTACGCCCAA 1860 consensus_14247#2 ------------------------------------------------------------ consensus_14247#1 ------------------------------------------------------------ consensus_14247#0 CCTCCATCATGCCAATTCCATCTCCACTGACCATGTTTGATATTGCTCCATTCCAGTCAT 1920 consensus_14247#2 ------------------------------------------------------------ consensus_14247#1 ------------------------------------------------------------ consensus_14247#0 CTACAGATATACAGATGCAGCCTTGTTGGCCACATATGCCTGTAGCACCACTACACACCG 1980 consensus_14247#2 ------------------------------------------------------------ consensus_14247#1 ------------------------------------------------------------ consensus_14247#0 TCCCATTATCAGTGCCACTACAGCAGCATCCAATGGACGGCACAGCTGCAGCGCAGTTTG 2040 consensus_14247#2 ------------------------------------------------------------ consensus_14247#1 ------------------------------------------------------------ consensus_14247#0 TTCATAACATCCAAGTGGACAACAAAGCGAGTTCGAATAACCGGTTCCAGGAGCCCTCTG 2100 consensus_14247#2 ------------------------------------------------------------ consensus_14247#1 ------------------------------------------------------------ consensus_14247#0 CTTCTGTTGTTCCAGCAGATAACAGCAAGAACATTCCAAATGCATCTGCTACTCAGTTTA 2160 consensus_14247#2 ------------------------------------------------------------ consensus_14247#1 ------------------------------------------------------------ consensus_14247#0 CAGATGATTTAGGCCTTGTTGAACAGCCAGCCTCCACAAGTTCAAATGCTCAAACTGTTC 2220 consensus_14247#2 ------------------------------------------------------------ consensus_14247#1 ------------------------------------------------------------ consensus_14247#0 AGCCTTCGTTTGCCCGGGTAGGCATGATCAGCAATGAAGTCCCAAACAGTGCCAAAGTTA 2280 consensus_14247#2 ------------------------------------------------------------ consensus_14247#1 ------------------------------------------------------------ consensus_14247#0 TGGGTAGGTCGTCGAACACACCAAATGTTAACCCTGGGATTGCTACAGGGGTCAGCAACT 2340 consensus_14247#2 ------------------------------------------------------------ consensus_14247#1 ------------------------------------------------------------ consensus_14247#0 CAAATGGAAGTCAGGTTGCCAGCATGCCTTCCAAGCCCCACCAATCTTCATCATCATCGG 2400 consensus_14247#2 ------------------------------------------------------------ consensus_14247#1 ------------------------------------------------------------ consensus_14247#0 GTCAACAGTACCAACATCAAGTTAATAATCAAGATCGTCGGTCTCGGGTGACCCAAAAGA 2460 consensus_14247#2 ------------------AAGTTAATAATCAAGATCGTCGGTCTCGGGTGACCCAAAAGA 42 consensus_14247#1 ------------------------------------------------------------ consensus_14247#0 CTGGAGCTGTCAATGAATGGCAACGCCGTTCAGGATACCA-GGGAAGGAATCAAAATTCC 2519 consensus_14247#2 CTGGAGCTGTCAATGAATGGCAACGCCGTTCAGGATACCA-GGGAAGGAATCAAAATTCC 101 consensus_14247#1 ----------------------AC-CCGTTCAGGATACCACGGGAAGGAATCCAAATTCC 37 ** *************** *********** ******* consensus_14247#0 GGTTCTGACA-AGAACTTGGGCACTGGTAGGATGAAGCAGATCTATGTTGCAAAATCATC 2578 consensus_14247#2 GGTTCTGACA-AGAACTTGGGCACTGGTAGGATGAAGCAGATCTATGTTGCAAAATCATC 160 consensus_14247#1 GGTTCTGACACAGAACTTGGGCACTGGTAGGATGAACCAGATCTATGTTGCCAAATCATC 97 ********** ************************* ************** ******** consensus_14247#0 ATCAGCAAGTGGCCATGCCCCATCTGGTTAGAAGCACAAATGCTCTTTTGCA-AAGCCTG 2637 consensus_14247#2 ATCAGCAAGTGGCCATGCCCCATCTGGTTAGAAGCACAAATGCTCTTTTGCA-AAGCCTG 219 consensus_14247#1 ATCAGCAAGTGGCCATGCCCCATCTGGTTAGAAGCCCCAATGCTCTTTTGCACAAGCCTG 157 *********************************** * ************** ******* consensus_14247#0 CGTCAATCA-GGAGGCCGCAACAGCTCGACTCGAGCATATTTGCACCAGACACA--TGCG 2694 consensus_14247#2 CGTCAATCA-GGAGGCCGCAACAGCTCGACTCGAGCATATTTGCACCAGACACA--TGCG 276 consensus_14247#1 CGTCCATCACGGAGGCCGCAACAGCTCGACTCGAGCATATTTGCACCAGACACCACTGCG 217 **** **** ******************************************* **** consensus_14247#0 AAATGTGTTGTCACTCCATGTCTGTCTATCCTTTTTGTTTTCTTTGGCGATTATAGCCTG 2754 consensus_14247#2 AAATGTGTTGTCACTCCATGTCTGTCTATCCTTTTTGTTTTCTTTGGCGATTATAGCCTG 336 consensus_14247#1 AAATGTGTTGTCACTCCATGTCTGTCTATCCTTTTTGTNTTCTTTGGCGATTATAGCCTG 277 ************************************** ********************* consensus_14247#0 TGCTGATCA-TTTATCTATTTTTGGTTCA-TTGTCTTGCAT-AGAGAAAAGAAAAAGGTA 2811 consensus_14247#2 TGCTGATCA-TTTATCTATTTTTGGTTCA-TTGTCTTGCAT-AGAGAAAAGAAAAAGGTA 393 consensus_14247#1 TGCTGATCACTTTATCTATTTTTGGTTCACTTGTCTTGCANTAGAGAAAAGAAAAAGGGA 337 ********* ******************* ********** **************** * consensus_14247#0 GTGTGGTTGCA--GTGTCAAAACTTTATAGTGATAT-CGTGACA--TGCCTGGATAAAAT 2866 consensus_14247#2 GTGTGGTTGCA--GTGTCAAAACTTTATAGTGATAT-CGTGACA--TGCCTGGATAAAAT 448 consensus_14247#1 GTGTGGTTGCCACGTGTCCAAACTTTATAGTGATATTCGTGACCACTGCCTGGATAAAAT 397 ********** ***** ***************** ****** ************** consensus_14247#0 TTGCAACCTTCAAAATATGCTGTTGTGTAAGTCGATGGTGTGCCGTCTGAATTGTTAATA 2926 consensus_14247#2 TTGCAACCTGCAAAAAAAAAAAAAAAAAAAAAAA-------------------------- 482 consensus_14247#1 TTGCACCTTCCAAATATGCTGTTGTGTAAGTCGATGGTGTGCCGTCTGAATTGTTAATAC 457 ***** * * **** * consensus_14247#0 CTATTATCATTATCATTATTATTTTTCCGGACTCTGGAGGTTTAAACAGCCTCGGAGATT 2986 consensus_14247#2 ------------------------------------------------------------ consensus_14247#1 TATTATCATTATCATTATTATTACAAAAAAAAAA-------------------------- 491 consensus_14247#0 GCTATAATAGGGATGAAAACATGCCCCTGTAAAAGAGAA 3025 consensus_14247#2 --------------------------------------- consensus_14247#1 --------------------------------------- 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Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||