These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1477#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 604 fasta sequence [CTCCGTCGTGAAAACCAACTGCCGGCGGCGTGGAAGTCGCCGGCGAGTTCATGGCCGCCGCGCTCATCGTCCCCGCAAACCCAAACCCTACTCCAAACCCCACCTCCTCCCTCCGTCCCCCATCGCGTGCCGCCTCCAGTGTGCTCCGCTTCCCCCGCCGCGACCGCGCTCGAACCCATCTCACTGCCGCGTTTGGGAGGGGATCACCCGCGGCGGCGGCCGAGCGCGGCGGGAAGGACTACTACGCTACGCTGAACCTCCGCCGCGACGCCACCCTGCAGGAGGTCAAGACGGCCTACCGTACCCTAGCGCGCAAGGTGCTGCACCTGCACTCCCCCCCCTTCACTCTCCGATGTCATGTCCCCTCGAAGTGTTAGATTGTGTGATACTGCTAGTTTTAGTGTATGCGCAGTTCAATTTATCTGGAATTGAACCGGTAGCGTGATATAGTTGCGATTGAGTTGGGCCACTTGCATTATCTGCTTGTTCCAACCTGGGTAATTATCGTCTTCTGCATCCCCTGCACAATCCTGGTTACAGTATATGTTAAAATGAGTAAAATGACTATGTAATTCTTGGTAATGTGGATCATGGAAATCGCACG] [+] EMBL AK109454 [CTCCGTCGTGAAAACCAACTGCCGGCGGCGTGGAAGTCGCCGGCGAGTTCATGGCCGCCGCGCTCATCGTCCCCGCAAACCCAAACCCTACTCCAAACCCCACCTCCTCCCTCCGTCCCCCATCGCGTGCCGCCTCCAGTGTGCTCCGCTTCCCCCGCCGCGACCGCGCTCGAACCCATCTCACTGCCGCGTTTGGGAGGGGATCACCCGCGGCGGCGGCCGAGCGCGGCGGGAAGGACTACTACGCTACGCTGAACCTCCGCCGCGACGCCACCCTGCAGGAGGTCAAGACGGCCTACCGTACCCTAGCGCGCAAGGTGCTGCACCTGCACTCCCCCCCCTTCACTCTCCGATGTCATGTCCCCTCGAAGTGTTAGATTGTGTGATACTGCTAGTTTTAGTGTATGCGCAGTTCAATTTATCTGGAATTGAACCGGTAGCGTGATATAGTTGCGATTGAGTTGGGCCACTTGCATTATCTGCTTGTTCCAACCTGGGTAATTATCGTCTTCTGCATCCCCTGCACAATCCTGGTTACAGTATATGTTAAAATGAGTAAAATGACTATGTAATTCTTGGTAATGTGGATCATGGAAATCGCACG] consensusID : consensus_1477#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 201 fasta sequence [CTCTCCGTCGTGAAAACCAACTGCCGGCGGCGTGGAAGTCGCCGGCGAGTTCATGGCCGCCGNGTTCATCGTCCCCGCAAACCCAAANCCTACTTCAAANCCCAACTTCTTCNTCCGTNCCCCATNGNGTGCCGCTTCCAGTGTGCTCCGTTTCCCCGNCGGGACCGGGGTTGGAAACCCATTTTTAATTGCGGGGTTTTG] [+] EMBL OSS1513A [CTCTCCGTCGTGAAAACCAACTGCCGGCGGCGTGGAAGTCGCCGGCGAGTTCATGGCCGCCGNGTTCATCGTCCCCGCAAACCCAAANCCTACTTCAAANCCCAACTTCTTCNTCCGTNCCCCATNGNGTGCCGCTTCCAGTGTGCTCCGTTTCCCCGNCGGGACCGGGGTTGGAAACCCATTTTTAATTGCGGGGTTTTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1477#0 --CTCCGTCGTGAAAACCAACTGCCGGCGGCGTGGAAGTCGCCGGCGAGTTCATGGCCGC 58 consensus_1477#1 CTCTCCGTCGTGAAAACCAACTGCCGGCGGCGTGGAAGTCGCCGGCGAGTTCATGGCCGC 60 ********************************************************** consensus_1477#0 CGCGCTCATCGTCCCCGCAAACCCAAACCCTACTCCAAACCCCACCTCCTCCCTCCGTCC 118 consensus_1477#1 CGNGTTCATCGTCCCCGCAAACCCAAANCCTACTTCAAANCCCAACTTCTTCNTCCGTNC 120 ** * ********************** ****** **** **** ** ** * ***** * consensus_1477#0 CCCATCGCGTGCCGCCTCCAGTGTGCTCCGCTTCCCCCGCCGCGACCGCGCTCG--AACC 176 consensus_1477#1 CCCATNGNGTGCCGCTTCCAGTGTGCTCCGTTTCCCC-GNCGGGACCGGGGTTGGAAACC 179 ***** * ******* ************** ****** * ** ***** * * * **** consensus_1477#0 CATCTC--ACTGCCGCGTTTGGGAGGGGATCACCCGCGGCGGCGGCCGAGCGCGGCGGGA 234 consensus_1477#1 CATTTTTAATTGCGGGGTTTTG-------------------------------------- 201 *** * * *** * **** * consensus_1477#0 AGGACTACTACGCTACGCTGAACCTCCGCCGCGACGCCACCCTGCAGGAGGTCAAGACGG 294 consensus_1477#1 ------------------------------------------------------------ consensus_1477#0 CCTACCGTACCCTAGCGCGCAAGGTGCTGCACCTGCACTCCCCCCCCTTCACTCTCCGAT 354 consensus_1477#1 ------------------------------------------------------------ consensus_1477#0 GTCATGTCCCCTCGAAGTGTTAGATTGTGTGATACTGCTAGTTTTAGTGTATGCGCAGTT 414 consensus_1477#1 ------------------------------------------------------------ consensus_1477#0 CAATTTATCTGGAATTGAACCGGTAGCGTGATATAGTTGCGATTGAGTTGGGCCACTTGC 474 consensus_1477#1 ------------------------------------------------------------ consensus_1477#0 ATTATCTGCTTGTTCCAACCTGGGTAATTATCGTCTTCTGCATCCCCTGCACAATCCTGG 534 consensus_1477#1 ------------------------------------------------------------ consensus_1477#0 TTACAGTATATGTTAAAATGAGTAAAATGACTATGTAATTCTTGGTAATGTGGATCATGG 594 consensus_1477#1 ------------------------------------------------------------ consensus_1477#0 AAATCGCACG 604 consensus_1477#1 ---------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||