These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1487#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 632 fasta sequence [AATTCGGCACGAGGATCCGTAGTAAAATCGAACTAGAAATTTTTATATCAAAATGACGGATATATTAGTTGATGATCCAACATTAGGACAGCTAGGAACTGATATTCGAGTATTTGGAAAATGGAGTGGAGCTGATGTACAAATTTCGGATATGTCACTTGAAGATTATATTCTCGGTGCCAAACAGCCAAAATTTCTTCCACATTCAGCAGGTCGTTATCAAGTCAAACGTTTTCGTAAGGCTTCATGTCCAATTGTTGAACGTCTCGTCTGTTCACTTATGTTTCACGGACGTAATAATGGTAAAAAATTATTGGCTGTTCGTATTGTTCGACATACATTCGAAATTATTCATTTACTTACTGGCGAAAATCCACTTCAAGTACTCGTCAATGCTATNATCAACAGTGGACCACGTGAAGATTCCACACGTATTGGTCGTCAAGGTACCGTTCGACGACNAGCTGTCGATGTTTCACCATTACGACGTGTCAATCAGGCACTTTATTTACTCTGCACAGGTGCCCGAGATTCTGCATTCAAATCGGTTAAAACATTGCCGAATGTCTTGCCGATGAATTAATCAATGCTGCTAAAGGCTCATCAACATCTTTTGCAATTAAACGTAAAGA] [+] EMBL CA753724 [AATTCGGCACGAGGATCCGTAGTAAAATCGAACTAGAAATTTTTATATCAAAATGACGGATATATTAGTTGATGATCCAACATTAGGACAGCTAGGAACTGATATTCGAGTATTTGGAAAATGGAGTGGAGCTGATGTACAAATTTCGGATATGTCACTTGAAGATTATATTCTCGGTGCCAAACAGCCAAAATTTCTTCCACATTCAGCAGGTCGTTATCAAGTCAAACGTTTTCGTAAGGCTTCATGTCCAATTGTTGAACGTCTCGTCTGTTCACTTATGTTTCACGGACGTAATAATGGTAAAAAATTATTGGCTGTTCGTATTGTTCGACATACATTCGAAATTATTCATTTACTTACTGGCGAAAATCCACTTCAAGTACTCGTCAATGCTATNATCAACAGTGGACCACGTGAAGATTCCACACGTATTGGTCGTCAAGGTACCGTTCGACGACNAGCTGTCGATGTTTCACCATTACGACGTGTCAATCAGGCACTTTATTTACTCTGCACAGGTGCCCGAGATTCTGCATTCAAATCGGTTAAAACATTGCCGAATGTCTTGCCGATGAATTAATCAATGCTGCTAAAGGCTCATCAACATCTTTTGCAATTAAACGTAAAGA] consensusID : consensus_1487#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 608 fasta sequence [TCGATCTCCTTTTCGTGTGTGAAAAGAGAAAAATCAAATAACCATCATGACAGACTTCTTACAAACCGATAACCTTGCTTTGGAAACATCAGCAACCGATATCCGAGTTTTCGGCAAATGGAGTGGTGCCGATGTTCAAATTTCGGATATGTCACTCGAAGATTATATCTTAGGTGCAAAACAACCGAAATTTCTTCCTCATTCAGCTGGTCGTTATCAAGTGAAACGTTTTCGAAAAGCATCATGTCCAATTGTTGAACGTCTTGTTTGCTCACTTATGTTTCACGGACGTAACAATGGAAAGAAATTATTGGCTGTCCGAATTGTTCGTCATACATTTGAAATCATCCATTTACTTACAGGCGAAAACCCACTTCAAGTTCTTGTTAACGCTATTATTAATAGCGGACCACGTGAAGATTCAACACGTATTGGTCGTCAAGGTACAGTTCGACGACAAGCTGTCGATGTTTCGCCTTTACGACGAGTCAATCAAGCACTCTATTTACTCTGCACAGGTGCACGAGATTCAGCATTCAAATCAGTAAAAACCATTGCTGAATGTCTTGCTGATGAAACTTATCATGCCGCTAAAGGGTCGTCAACAT] [+] EMBL CA758830 [TCGATCTCCTTTTCGTGTGTGAAAAGAGAAAAATCAAATAACCATCATGACAGACTTCTTACAAACCGATAACCTTGCTTTGGAAACATCAGCAACCGATATCCGAGTTTTCGGCAAATGGAGTGGTGCCGATGTTCAAATTTCGGATATGTCACTCGAAGATTATATCTTAGGTGCAAAACAACCGAAATTTCTTCCTCATTCAGCTGGTCGTTATCAAGTGAAACGTTTTCGAAAAGCATCATGTCCAATTGTTGAACGTCTTGTTTGCTCACTTATGTTTCACGGACGTAACAATGGAAAGAAATTATTGGCTGTCCGAATTGTTCGTCATACATTTGAAATCATCCATTTACTTACAGGCGAAAACCCACTTCAAGTTCTTGTTAACGCTATTATTAATAGCGGACCACGTGAAGATTCAACACGTATTGGTCGTCAAGGTACAGTTCGACGACAAGCTGTCGATGTTTCGCCTTTACGACGAGTCAATCAAGCACTCTATTTACTCTGCACAGGTGCACGAGATTCAGCATTCAAATCAGTAAAAACCATTGCTGAATGTCTTGCTGATGAAACTTATCATGCCGCTAAAGGGTCGTCAACAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1487#0 AATTCGGCACGAGGATCCGTAGTAAAATCGAACTAGAAATTTTTATATCAAAATGACGGA 60 consensus_1487#1 ---TCGATCTCCTTTTCGTGTGTGAAA---AGAGAAAAATCAAATAACCATCATGACAGA 54 *** ** ** *** * * **** * ** ***** ** consensus_1487#0 TATATTA---GTTGATGATCCAACATTAGGACAGCTAGGAACTGATATTCGAGTATTTGG 117 consensus_1487#1 CTTCTTACAAACCGATAACCTTGCTTTGGAAACATCAGCAACCGATATCCGAGTTTTCGG 114 * *** *** * * * ** * * ** *** ***** ***** ** ** consensus_1487#0 AAAATGGAGTGGAGCTGATGTACAAATTTCGGATATGTCACTTGAAGATTATATTCTCGG 177 consensus_1487#1 CAAATGGAGTGGTGCCGATGTTCAAATTTCGGATATGTCACTCGAAGATTATATCTTAGG 174 *********** ** ***** ******************** *********** * ** consensus_1487#0 TGCCAAACAGCCAAAATTTCTTCCACATTCAGCAGGTCGTTATCAAGTCAAACGTTTTCG 237 consensus_1487#1 TGCAAAACAACCGAAATTTCTTCCTCATTCAGCTGGTCGTTATCAAGTGAAACGTTTTCG 234 *** ***** ** *********** ******** ************** *********** consensus_1487#0 TAAGGCTTCATGTCCAATTGTTGAACGTCTCGTCTGTTCACTTATGTTTCACGGACGTAA 297 consensus_1487#1 AAAAGCATCATGTCCAATTGTTGAACGTCTTGTTTGCTCACTTATGTTTCACGGACGTAA 294 ** ** *********************** ** ** *********************** consensus_1487#0 TAATGGTAAAAAATTATTGGCTGTTCGTATTGTTCGACATACATTCGAAATTATTCATTT 357 consensus_1487#1 CAATGGAAAGAAATTATTGGCTGTCCGAATTGTTCGTCATACATTTGAAATCATCCATTT 354 ***** ** ************** ** ******** ******** ***** ** ***** consensus_1487#0 ACTTACTGGCGAAAATCCACTTCAAGTACTCGTCAATGCTATNATCAACAGTGGACCACG 417 consensus_1487#1 ACTTACAGGCGAAAACCCACTTCAAGTTCTTGTTAACGCTATTATTAATAGCGGACCACG 414 ****** ******** *********** ** ** ** ***** ** ** ** ******** consensus_1487#0 TGAAGATTCCACACGTATTGGTCGTCAAGGTACCGTTCGACGACNAGCTGTCGATGTTTC 477 consensus_1487#1 TGAAGATTCAACACGTATTGGTCGTCAAGGTACAGTTCGACGACAAGCTGTCGATGTTTC 474 ********* *********************** ********** *************** consensus_1487#0 ACCATTACGACGTGTCAATCAGGCACTTTATTTACTCTGCACAGGTGCCCGAGATTCTGC 537 consensus_1487#1 GCCTTTACGACGAGTCAATCAAGCACTCTATTTACTCTGCACAGGTGCACGAGATTCAGC 534 ** ******** ******** ***** ******************** ******** ** consensus_1487#0 ATTCAAATCGGTTAAAAC-ATTGCCGAATGTCTTGCCGATGAATTAATCAATGCTGCTAA 596 consensus_1487#1 ATTCAAATCAGTAAAAACCATTGCTGAATGTCTTGCTGATGAAACTTATCATGCCGCTAA 594 ********* ** ***** ***** *********** ****** **** ***** consensus_1487#0 AGGCTCATCAACATCTTTTGCAATTAAACGTAAAGA 632 consensus_1487#1 AGGGTCGTCAACAT---------------------- 608 *** ** ******* |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||