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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15369#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 17 consensus length = 2048 fasta sequence
[NTNTNCAACCAAAAAAAGTCNAATTCTGAAAACAAGAGAGAGATCACAGCAGCCGCCGCCATCGCCATCTCTCGGACGGAAACCCTAGACGAGCGACCATGGCCACCATGCCAAGCACTTGCGCCTCCTCCTCCTCCCTCTTCCTCCTCCTCCGCAGGGACAGGAGGAGCAGCAGGAGTGCCAGCCTCCCCGGACCCGCCCGCCGTTTGGGGGTTGTGCGCGCCTCCGCCAAGGAGATCGCCTTCGACCAGGGATCGCGATCCTCCCTCCAGGCCGGCGTCGAGAAGCTCGCCGCCGCCGTCGCCGTCACCCTCGGTCCCAGAGGAAGAAATGTCGTCTTGGATGAGTTTGGGAGCCCCAAAGTGGTCAATGACGGAGTTACCATTGCTCGAGCTATTGAGCTCGCTGATCCAAT-GGAGAATGCCGGT-GCT-GCTTTGATTCGTGAGGTTGCCAGCAAGACAAAT-GACTCAGCAGGT-GATGGGACTACAACCGCATCTGTCCTGGCTCGTGAGATCATAAAATTGGGCCTGCTGAGTGTTACTTCAGGGGCAAACCCAGTATCTATCAAAAAGGGCATAGATAAGACCGTGCACAGTTTAGTTGAGGAACTTGAGAAGAAGTCAAGGCCTGTGAAGGGCAGTGGTGATATTAAAGCTGTTGCTGCCATATCTGCTGGAAATGATGACTTCGTCGGTACCATGATCGCTGAGGCTATTGACAAGGTTGGCCCTGATGGTGTTCTTTCGATCGAGTCATCATCATCTTGTGAGACCACCGTTGAAGTTGAAGAAGGAATGGAGATTGACAGAGGATATATCTCTCCTCAGTTTGTTACAAATCCTGAGAAGTCACTTGTTGAGTTTGAAAATGCTAGAATTCTTGTCACTGACCAGAAGATTTCTTCAATAAAAGAAATAATTCCTTTGCTGGAACAAACAACTCAACTAAGAGCACCACTCCTCATAATTGCGGAGGATGTAGCTGGTGAAGCTTTGGCAACTTTAGTTGTCAACAAGCTTAGAGGAATTCTCAATGTAGCTGCGATTAAAGCACCTGGCTTTGGTGAAAGGCGTAAAGCTCTTCTTCAGGACATCGCCATCGTTACAGGTGCTGAATTTCAAGCCAAAGATCTTGGTTTACTGGTGGAGAGTACAACCGTGGAGCAACTTGGCATAGCCCGGAAAGTGACAATCTCCCAGTCATCCACTACCATTATAGCAGATGTTGCCACCAAAGATGAGATCCAGGCAAGAATTGCACAGCTGAAGAGAGAGCTTTCTCAGACAGACTCAGCATATGACTCTGAGAAGTTGGCTGAGAGAATCGCAAAGCTTTCTGGCGGAGTTGCGGTTATAAAGGTAGGAGCTGCAACCGAGACAGAGCTTGAGGATCGCAAGCTTCGTATCGAGGATGCCAAGAATGCAACATTTGCTGCTATTGAGGAAGGTAT-AGTACCTGGAGGTGGTGCGGCCTATGTTCACCTGTCAAAATTTGTACCA-GCCATCAAGGAGAAGTTGGATGACCCTGAAGAGCGCCTTGGTGCTGATATCA-TTCAAAAGGCTCTAGT-GGCACC-GGCA-GCACTAATAGCACAC-AATGCTGGAGTTGAA-GGGGAAGTGATTGTAGAAAAGATCAA-GGAGAGTGAATGGGAGGTTGGCTACAA-TGCGATGGCTGACAGACACGAGAACTTGGTACA-GGCTGGTGTGATTGACCCTGCA-AAGGTGA-CA-AGATGTGCGTTGCAAAACGCAGCCTCGGTGGCTGGAATGGTACTAACCACGCAAGCCATCGTTGTGGAGAAGCCA-AAGAAGAAGGCGTCGGCGGCTTCCGGGGCACCAGAAGGTTCTCTTGCCATGTGAAGGAGGTGATCATATCTCCCATTCTATTCTACCTGTGGTGTGTGATTTTGCTACTGCGTCGTAACAA-CAAAACAGTACA-AGATGTTTAGCAGAGGTAAACTTGTGAACAAGAAGAATAAATCAATCTAGTCCAAGTGAAGTGAGTAGCTGTGATGGTTTCCTTTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL OSC111241 [NTNTNCAACCAAAAAAAGTCNAATTCTGAAAACAAGAGAGAGATCACAGCAGCCGCCGCCATCGCCATCTCTCGGACGGAAACCCTAGACGAGCGACCATGGCCACCATGCCAAGCACTTGCGCCTCCTCCTCCTCCCTCTTCCTCCTCCTCCGCAGGGACAGGAGGAGCAGCAGGAGTNCCAGCNTCCCCGGACCCGCCCGCCGTTTGGGGGTTGTGCGCGCCTCCGCCAAGGAGATCGCCTTCGACCAGGGATCGCGATCCTCCCTCCAGGCNGGCGTCGAG ]
[+] EMBL AY224481 [ gACAGCAGCCGCCGCCATCGCCATCTCTCGGACGGAAACCCTAGACGAGCGACCATGGCCACCATGCCAAGCACTTGCGCCTCCTCCTCCTCCCTCTTCCTCCTCCTCCGCAGGGACAGGAGGAGCAGCAGGAGTGCCAGCCTCCCCGGACCCGCCCGCCGTTTGGGGGTTGTGCGCGCCTCCGCCAAGGAGATCGCCTTCGACCAGGGATCGCGATCCTCCCTCCAGGCCGGCGTCGAGAAGCTCGCCGCCGCCGTCGCCGTCACCCTCGGTCCCAGAGGAAGAAATGTCGTCTTGGATGAGTTTGGGAGCCCCAAAGTGGTCAATGACGGAGTTACCATTGCTCGAGCTATTGAGCTCGCTGATCCAAT GGAGAATGCCGGT GCT GCTTTGATTCGTGAGGTTGCCAGCAAGACAAAT GACTCAGCAGGT GATGGGACTACAACCGCATCTGTCCTGGCTCGTGAGATCATAAAATTGGGCCTGCTGAGTGTTACTTCAGGGGCAAACCCAGTATCTATCAAAAAGGGCATAGATAAGACCGTGCACAGTTTAGTTGAGGAACTTGAGAAGAAGTCAAGGGCTGTGAAGGGCAGTGGTGATATTAAAGCTGAGGCTGCCATATGTGCTGGAAATGATGACTGCGCCGGTACC ]
[+] EMBL CB669414 [ ctCCGCCGCCATCGCCATCTCTCGGACGGAAACCCTAGACGAGCGACCATGGCCACCATGCCAAGCACTTGCGCCTCCTCCTCCTCCCTCTTCCTCCTCCTCCGCAGGGACAGGAGGAGCAGCAGGAGTGCCAGCCTCCCCGGACCCGCCCGCCGTTTGGGGGTTGTGCGCGCCTCCGCCAAGGAGATCGCCTTCGACCAGGGATCGCGATCCTCCCTCCAGGCCGGCGTCGAGAAGCTCGCCGCCGCCGTCGCCGTCACCCTCGGTCCCAGAGGAAGAAATGTCGTCTTGGATGAGTTTGGGAGCCCCAAAGTGGTCAATGACGGAGTTACCATTGCTCGAGCTATTGAGCTCGCTGATCCAAT GGAGAATGCCGGT GCT GCTTTGATTCGTGAGGTTGCCAGCAAGACAAAT GACTCAGCAGGT GATGGGACTACAACCGCATCTGTCCTGGCTCGTGAGATCATAAAATTGGGCCTGCTGAGTGTTACTTCAGGGGCAAACCCAGTATCTATCAAAAAGGGCATAGATAAGACCGTGCACAGTTTAGTTGAGGAACTTGAGAAGAAGTCAAGGCCTGTGAAGGGCAGTGGTGATATTAAAGCTGTTGCTGCCATATCTGCTGGAAATGATGACTTCGTCGGTACCATGATCGCTGAGGCTATTGACAAGGTTGGCCCTGATGGTGTTCTTTCGATCGAGTCATCATCATCTTGTGAGACCACCGTTGAAGTTGAAGAAGGAATGGAGATTGACAGAGGA ]
[+] EMBL C74910 [ CGCCATCGCCATCTCTCGGACGGAAACCCTAGACGAGCGACCATGGCCACCATGCCAAGCACTTGCGCCTCCTCCTCCTCCCTCTTCCTCCTCCTCCGCA GGACAGGAGGAGCAGCAGGAGTGCCAGCCTCCCCGGACCCGCCCGCCGTTTGGGGGTTGTGCGCGCCTCCGCCAAGGAGATCGCCTTCGACCAGGGATCGCGATCCTCCCTCCAGGCCGGCGTCGAGAAGCTCGCCGCCGCCGTCGCCGTCACCCTCGGTCCCAGAGGAAGAAATGTCGTCTTGGATGAGTTTGGGAGCCCCAAAGTGGTCAATGACGGAGTTACCATTGCTCGAGCTATTGAGCTCGCTGATCCAATGGGAGAATGCCGGTGGCTGGCTTTGATTCGTGAGGTTGCCAGCAAGACAAATGGACTCAGCAGGTGGATGGGACTACA ]
[+] EMBL CA755820 [ CGCCATCTCTCGGACGGAAACCCTAGACGAGCGACCATGGCCACCATGCCAAGCACTTGCGCCTCCTCCTCCTCCCTCTTCCTCCTCCTCCGCAGGGACAGGAGGAGCAGCAGGAGTGCCAGCCTCCCCGGACCCGCCCGCCGTTTGGGGGTTGTGCGCGCCTCCGCCAAGGAGATCGCCTTCGACCAGGGATCGCGATCCTCCCTCCAGGCCGGCGTCGAGAAGCTCGCCGCCGCCGTCGCCGTCACCCTCGGTCCCAGAGGAAGAAATGTCGTCTTGGATGAGTTTGGGAGCCCCAAAGTGGTCAATGACGGAGTTACCATTGCTCGAGCTATTGAGCTCGCTGATCCAAT GGAGAATGCCGGT GCT GCTTTGATTCGTGAGGTTGCCAGCAAGACAAAT GACTCAGCAGGT GATGGGACTACNACCGCATCTGTCCTGGCTCGTGAGATCATAAAATTGGGCCTGCTGAGTGTTACTTCAGGGGCAAACCCAGTATCTATCANAAAGGGCATAGATNAGACCGTGCACAGTTTAGTTGAGGAACTTGAGAAGAAGTCAAGGCCTGTGAAGGGCAGTGGTGATATTAAAGCTGTTGCT ]
[+] EMBL CB638925 [ CGGACGGAAACCCTAGACGAGCGACCATGGCCACCATGCCAAGCACTTGCGCCTCCTCCTCCTCCCTCTTCCTCCTCCTCCGCAGGGACAGGAGGAGCAGCAGGAGTGCCAGCCTCCCCGGACCCGCCCGCCGTTTGGGGGTTGTGCGCGCCTCCGCCAAGGAGATCGCCTTCGACCAGGGATCGCGATCCTCCCTCCAGGCCGGCGTCGAGAAGCTCGCCGCCGCCGTCGCCGTCACCCTCGGTCCCAGAGGAAGAAATGTCGTCTTGGATGAGTTTGGGAGCCCCAAAGTGGTCAATGACGGAGTTACCATTGCTCGAGCTATTGAGCTCGCTGATCCAAT GGAGAATGCCGGT GCT GCTTTGATTCGTGAGGTTGCCAGCAAGACAAAT GACTCAGCAGGT GATGGGACTACAACCGCATCTGTCCTGGCTCGTGAGATCATAAAATTGGGCCTGCTGAGTGTTACTTCAGGGGCAAACCCAGTATCTATCAAAAAGGGCATAGATAAGACCGTGCACAGTTTAGTT ]
[+] EMBL CB620498 [ TCTTGGCCCTTTATGGGAGCCCCAAAGTGGTCAATGACGGAGTTACCATTGCTCGAGCTATTGAGCTCGCTGATCCAAT GGAGAATGCCGGT GCT GCTTTGATTCGTGAGGTTGCCAGCAAGACAAAT GACTCAGCAGGT GATGGGACTACAACCGCATCTGTCCTGGCTCGTGAGATCATAAAATTGGGCCTGCTGAGTGTTACTTCAGGGGCAAACCCAGTATCTATCAAAAAGGGCATAGATAAGACCGTGCACAGTTTAGTTGAGGAACTTGAGAAGAAGTCAAGGCCTGTGAAGGGCAGTGGTGATATTAAAGCTGTTGCTGCCATATCTGCTGGAAATGATGACTTCGTCGGTACCATGATCGCTGAGGCTATTGACAAGGTTGGCCCTGATGGTGTTCTTTCGATCGAGTCATCATCATCTTTTGAGACCACCGTTGAAGTTGAAGAAGGAATGGAGATTGACAGAGGATATATCTCTCCTCAGTTTGTTACAAATCCTGAGAAGTCACTTGTTGAGTTTGAAAATGCTAGAATTCTTGTCACTGACCAGAAGATTTCTTCAATAAAAGAAATAATTCCTTTGCTGGAACAAACAACTCAACTAAGAGCACCACTCCTCATAATTGCGGAGGATGTAGCTGGTGAAGCTTTGGCAACTTTAGTTGTCAACAAGCTTAGAGGAATTCTCAATGTAGCTGCGATTAAAGCACCTGGCTTTGGTGAAAGGCGTAAAGCTCTTCTTCAGGACATC ]
[+] EMBL AK061901 [ CTTTGCTGGAACAAACAACTCAACTAAGAGCACCACTCCTCATAATTGCGGAGGATGTAGCTGGCGAAGCTTTGGCAACTTTAGTTGTCAACAAGCTTAGAGGAATTCTCAATGTAGCTGCGATTAAAGCACCTGGCTTTGGTGAAAGGCGTAAGGCTCTTCTTCAGGACATCGCCATCGTTACAGGTGCTGAATTTCAAGCCAAAGATCTTGGTTTACTGGTGGAGAGTACAACCGTGGAGCAACTTGGCATAGCCCGGAAAGTGACAATCTCCCAGTCATCCACTACCATTATAGCAGATGTTGCCACCAAAGATGAGATCCAGGCAAGAATTGCACAGCTGAAGAGAGAGCTTTCTCAGACAGACTCAGCATATGACTCTGAGAAGTTGGCTGAGAGAATCGCAAAGCTTTCTGGCGGAGTTGCGGTTATAAAGGTAGGAGCTGCAACCGAGACAGAGCTTGAGGATCGCAAGCTTCGTATCGAGGATGCCAAGAATGCAACATTTGCTGCTATTGAGGAAGGTAT AGTACCTGGAGGTGGTGCGGCCTATGTTCACCTGTCAAAATTTGTACCA GCCATCAAGGAGAAGTTGGATGACCCTGAAGAGCGCCTTGGTGCTGATATCA TTCAAAAGGCTCTAGT GGCACC GGCA GCACTAATAGCACAC AATGCTGGAGTTGAA GGGGAAGTGATTGTAGAAAAGATCAA GGAGAGTGAATGGGAGGTTGGCTACAA TGCGATGGCTGACAGACACGAGAACTTGGTACA GGCTGGTGTGATTGACCCTGCA AAGGTGA CA AGATGTGCGTTGCAAAACGCAGCCTCGGTGGCTGGAATGGTACTAACCACGCAAGCCATCGTTGTGGAGAAGCCA AAGAAGAAGGCGTCGGCGGCTTCCGGGGCACCAGAAGGTTCTCTTGCCATGTGAAGGAGGTGATCATATCTCCCATTCTATTCTACCTGTGGTGTGTGATTTTGCTACTGCGTCGTAACAA CAAAACAGTACA AGATGTTTAGCAGAGGTAAACTTGTGAACAAGAAGAATAAATCAATCTAGTCCAAGTGAAGTGAGTAGCTGTGATGG ]
[-] EMBL CB628010 [ ATAGCCCGGAAAGTGACAATCTCCCAGTCATCCACTACCATTATAGCAGATGTTGCCACCAAAGATGAGATCCAGGCAAGAATTGCACAGCTGAAGAGAGAGCTTTCTCAGACAGACTCAGCATATGACTCTGAGAAGTTGGCTGAGAGAATCGCAAAGCTTTCTGGCGGAGTTGCGGTTATAAAGGTAGGAGCTGCAACTGAGACAGAGCTTGAGGATCGCAAGCTTCGTATCGAGGATGCCAAGAATGCAACATTTGCTGCTATTGAGGAAGGTAT AGTACCTGGAGGTGGTGCGGCCTATGTTCACCTGTCAAAATTTGTACCA GCCATCAAGGAGAAGTTGGATGACCCTGAAGAGCGCCTTGGTGCTGATATCA TTCAAAAGGCTCTAGT GGCACC GGCA GCACTAATAGCACAC AATGCTGGAGTTGAA GGGGAAGTGATTGTAGAAAAGATCAA GGAGAGTGAATGGGAGGTTGGCTACAA TGCGATGGCTGACAGACACGAGAACTTGGTACA GGCTGGTGTGATTGACCCTGCA AAGGTGA CA AGATGTGCGTTGCAAAACGCAGCCTCGGTGGCTGGAATGGTACTAACCACGCAAGCCATCGTTGTGGAGAAGCCA AAGAAGAAGGCGTCGGCGGCTTCCGGGGCACCAGAAGGTTCTCTTGCCATGTGAAGGAGGTGATCATATCTCCCATTCTATTCTACCTGTGGTGTGTGATTTTGCTACTGCGTCGTAACAA CAAAACAGTACA AGATGTTTAGCAGAGGTAAACTGGTGAACAAGAAGAATAAATCAATCTAGTCCAAGT ]
[+] EMBL AU031565 [ TGCCACCAAAGATGAGATCCAGGCAAGAATTGCACAGCTGAAGAGAGAGCTTTCTCAGACAGACTCAGCATATGACTCTGAGAAGTTGGCTGAGAGAATCGCAAAGCTTTCTGGCGGAGTTGCGGTTATAAAGGTAGGAGCTGCAACCGAGACAGAGCTTGAGGATCGCAAGCTTCGTATCGAGGATGCCAAGAATGCAACATTTGCTGCTATTGAGGAAGGTAT AGTACCTGGAGGTGGTGCGGCCTATGTTCACCTGTCAAAATTTGTACCA GCCATCAAGGAGAAGTTGGATGACCCTGAAGAGCGCCTTGGTGCTGATATCATTTCAAAAGGCTCTAGTGGGCACCGGGNAGGCACTAATAGCACACAAATGCTGGAGTTGAAGGGGGAAGTGATTGTAGAAAAGATCAAGGGAGAGTGAATGGGAGGTTGGCTANAATTGCGATGGGTGACAGAGACGAGAACTTGGTACA GGCTGGTGTGATTG ]
[-] EMBL CB638926 [ ACATTTGCTGCTATTAAGGAAGGTAT AGTACCTGAAGGTGGTGCGGCCTATGTTCACCTGTCAAAATTTGTACCA GCCATCAAGGAGAAGTTGGATGACCCTGAAGAGCGCCTTGGTGCTGATATCA TTCAAAAGGCTCTAGT GGCACC GGCA GCACTAATAGCACAC AATGCTGGAGTTGAA GGGGAAGTGATTGTAGAAAAGATCAA GGAGAGTGAATGGGAGGTTGGCTACAA TGCGATGGCTGACAGACACGAGAACTTGGTACA GGCTGGTGTGATTGACCCTGCA AAGGTGA CA AGATGTGCGTTGCAAAACGCAGCCTCGGTGGCTGGAATGGTACTAACCACGCAAGCCATCGTTGTGGAGAAGCCA AAGAAGAAGGCGTCGGCGGCTTCCGGGGCACCAGAAGGTTCTCTTGCCATGTGAAGGAGGTGATCATATCTCCCATTCTATTCTACCTGTGGTGTGTGATTTTGCTACTGCGTCGTAACAA CAAAACAGTACA AGATGTTTAGCAGAGGTAAACTTGTGAACAAGAA ]
[+] EMBL BI795404 [ CTATTGAGGAAGTTATAAGTACCTGGAGGTGGTCCGCCCTATGTTCACCTGTCAAAATTTGTACCACGCCATCAAGGAGAA TTGGATGACCCTGAAGAGCGCCTTGGT CTGATATCA TTCAAAAGGCTCTAGT GGCACC GCA GCACTAATAGCACAC ATGCTGGAGTTGAA GGGGAAGTGATTGTAGAAAAGATCAA GGAGAGTGAATGGGAGGTTGGCTAC A TGCGATGGCTGACAGACACGAGAACTTGGTACACGGCTGGTGTGATTGACCCTGCA AAGGTGA CA AGATGTGCGTT C AAACGCAGCCTCGGTGGCTGGAATGGTACTAACCACGCAAGCCATCGTTGTGGAGAAGCCC AAGAAGAAGGCGTCGGCGGCTTCCGGGGCACCAGAAGGTTCTCTTGCCATGTGAAGGAGGTGATCATATCTCCCATTCTATTCTACCTGTGGTGTGTGATTTTGCTACTGCGTCGTAAC A C AAACAGTAC AGATGTTTAGCAGAGGTAAACTTGTGAAC AGAAGAATAAATC ATCTAGTCCCAGTGAAaaaaaaa ]
[+] EMBL AU095401 [ AAAAGGCTCTAGT GGCACC GGCA GCACTAATNGCACAC AATNCTGGAGTTGAA GGGGAAGTGATTGTAGAAAAGATCAA GGAGANTGAATGGGAGGTTGGCTACAA TGCGATGGCTGACAGACACGAGAACTTGGTACA GGCTGGTGTGATTGNCCCTGCA AAGGTGA CA AGATGTGCGTTGCAAAACGCAGCCTCGGTGGCTGGAATGGTACTAACCACGCAAGCCATCGTTGTGGAGAAGCCA AAGAAGAAGGCGTCGGCGGCTTCCGGGGCACCAGAAGGTTCTCTTGCCATGTGAAGGAGGTGATCATATCTCCCATTCTATTCTACCTGTGGTGTGTGATTTTGCTACTGCGTCGTAACAA CAAAACAGTACA AGATGTTTAGCAGAGGTAAACTTGTGAACAAGAAGAATAAATCAATCTAGTCCAAGTGAAGTGAaaaa ]
[+] EMBL AU092169 [ AAAAGGCTCTAGT NGCACC GGCA GCACTAATAGCNCAC AATGCTGGAGTTGAA GGGGAANTGATTGTAGAAAAGATCNA GGAGAGTGAATGGGAGGTTGNCTACAA TGCGATGGCTGACAGACNCGAGAACTTGGTACA GGCTGGTGTGATTGACCCTGCA AAGGTGA CA AGATGTGCGTTGCAAAACGCAGCCTCGGTGGCTGGAATGGTACTNACCACGCAAGCCATCGTTGTGGAGAAGCCA AAGAAGAAGGCNTCGGCGGCTTCCGGGGCACCAGAAGGTTCTCTTGCCATGTGAAGGAGGTGATCATATCTCCCATTCTATTCTACCTGTGGTGTGTGATTTTGCTACTGCGTCGTAACAA CAAAACAGTACA AGATGTTTAGCAGAGGTAAACTTGTGAACAAGAAGAATAAATCAATCTAGTCCAAGTGAAGTGAGTAGCTGTGATGGTTTCCTTTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL BI799470 [ GTGTGATTGACCCTGCACAAGGTGACCACAGATGTGCGTTGCCAAACGCAGCCTCGGTGGCTGGAATGGTACTAACCACGCAAGCCATCGTTGTGGAGAAGCCACAAGAAGAAGGCGTCGGCGGCTTCCGGGGCACCAGAAGGTTCTCTTGCCATGTGAAGGAGGTGATCATATCTCCCATTCTATTCTACCTGTGGTGTGTGATTTTGCTACTGCGTCGTAACAACCAAACCAGTACACAGATGTTTACCAGAGGTAAACTTGTGAACCAGAAGAATAAAaaaaaaa ]
[+] EMBL CB678742 [ TGCAACACGCAGCCTCGGTGGCTGGAATGGTACTAACCACGCAAGCCATCGTTGTGGAGAAGCCA AAGAAGAAGGCGTCGGCGGCTTCCGGGGCACCAGAAGGTTCTCTTGCCATGTGAAGGAGGTGATCATATCTCCCATTCTATTCTACCTGTGGTGTGTGATTTTGCTACTGCGTCGTAACAA CAAAACAGTACA AGATGTTTAGCAGAGGTAAACTTGTGAACAAGAAGAATAAATCAATCTAGTCCAAGTGAAGTGAGTAGCTG ]
[+] EMBL BI797692 [ GGGGCACCAGAAGGTTCTCTTGCCATGTGAAGGAGGTGATCATATCTCCCATTCTATTCTACCTGTGGTGTGTGATTTTGCTACTGCGTCGTAAC A C AAACAGTACA AGATGTTTAGCAGAGGTAAACTTGTGAACAAGAAGAATAAATCAATCTAGTCCAAaa ]
consensusID : consensus_15369#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 842 fasta sequence
[GTATTTTTGAGGGTTTGGTTTCAACCAAAAAAAGTCCAAATCTGAAAACAAGAGAGAGATCACAGCAGCCGCCGCCATCGCCATCTCTCGGACGGAAACCCTAGACGAGCGACCATGGCCACCATGCCAAGCACTTGCGCCTCCTCCTCCTCCCTCTTCCTCCTCCTCCGCAAGGACAGGAGGAGCAGCAGGAGTGCCAGCCTCCCCGGACCCGCCCGCCGTTTGGGGGTTGTGCGCGCCTCCGCCAAGGAGATCGCCTTCGACCAGGGATCGCGATCCTCCCTCCAGGCCGGCGTCGAGAAGCTCGCCGCCGCCGTCGCCGTCACCCTCGGTCCCAGAGGTTCTTACTTCCTTACCCTTTCCTCAAATACTAGTCGCTGTACACCATTTGTCCCTTGATCTTGTTGGTTTCTTTCTGTATGCACCTTATTAAGCCTTTTGTCCTTTTTTTTCATTCTGCTGCAGGCAGTGTCTGACTAATTCTTCTTGTGGTATTGTAGGAAGAAATGTCGTCTTGGATGAGTTTGGGAGCCCCAAAGTGGTCAATGACGGAGTTACCATTGCTCGAGCTATTGAGCTCGCTGATCCAATGGAGAATGCCGGTGCTGCTTTGATTCGTGAGGTTGCCAGCAAGACAAATGACTCAGCAGGTGATGGGACTACAACCGCATCTGTCCTGGCTCGTGAGATCATAAAATTGGGCCTGCTGAGTGTTACTTCAGGGGCAAACCCAGTATCTATCAAAAAGGGCATAGATAAGACCGTGCACAGTTTAGTTGACGAACTTGAGAAGAAGTCAAGGCCTGTGAAGGGCAGTGGTGATATTAAAGCTGTTGCTGCCA]
[+] EMBL CB628009 [GTATTTTTGAGGGTTTGGTTTCAACCAAAAAAAGTCCAAATCTGAAAACAAGAGAGAGATCACAGCAGCCGCCGCCATCGCCATCTCTCGGACGGAAACCCTAGACGAGCGACCATGGCCACCATGCCAAGCACTTGCGCCTCCTCCTCCTCCCTCTTCCTCCTCCTCCGCAAGGACAGGAGGAGCAGCAGGAGTGCCAGCCTCCCCGGACCCGCCCGCCGTTTGGGGGTTGTGCGCGCCTCCGCCAAGGAGATCGCCTTCGACCAGGGATCGCGATCCTCCCTCCAGGCCGGCGTCGAGAAGCTCGCCGCCGCCGTCGCCGTCACCCTCGGTCCCAGAGGTTCTTACTTCCTTACCCTTTCCTCAAATACTAGTCGCTGTACACCATTTGTCCCTTGATCTTGTTGGTTTCTTTCTGTATGCACCTTATTAAGCCTTTTGTCCTTTTTTTTCATTCTGCTGCAGGCAGTGTCTGACTAATTCTTCTTGTGGTATTGTAGGAAGAAATGTCGTCTTGGATGAGTTTGGGAGCCCCAAAGTGGTCAATGACGGAGTTACCATTGCTCGAGCTATTGAGCTCGCTGATCCAATGGAGAATGCCGGTGCTGCTTTGATTCGTGAGGTTGCCAGCAAGACAAATGACTCAGCAGGTGATGGGACTACAACCGCATCTGTCCTGGCTCGTGAGATCATAAAATTGGGCCTGCTGAGTGTTACTTCAGGGGCAAACCCAGTATCTATCAAAAAGGGCATAGATAAGACCGTGCACAGTTTAG ]
[+] EMBL CB679392 [ CGCCCTCATCGCCATCTCTCGGACGGAAACCCTAGACGAGCGACCATGGCCACCATGCCAAGCACTTGCGCCTCCTCCTCCTCCCTCTTCCTCCTCCTCCGCAGGGACAGGAGGAGCAGCAGGAGTGCCAGCCTCCCCGGACCCGCCCGCCGTTTGGGGGTTGTGCGCGCCTCCGCCAAGGAGATCGCCTTCGACCAGGGATCGCGATCCTCCCTCCAGGCCGGCGTCGAGAAGCTCGCCGCCGCCGTCGCCGTCACCCTCGGTCCCAGAGGTTCTTACTTCCTTACCCTTTCCTCAAATACTAGTCGCTGTACACCATTTGTCCCTTGATCTTGTTGGTTTCTTTCTGTATGCACCTTATTAAGCCTTTTGTCCTTTTTTTTCATTCTGCTGCAGGCAGTGTCTGACTAATTCTTCTTGTGGTATTGTAGGAAGAAATGTCGTCTTGGATGAGTTTGGGAGCCCCAAAGTGGTCAATGACGGAGTTACCATTGCTCGAGCTATTGAGCTCGCTGATCCAATGGAGAATGCCGGTGCTGCTTTGATTCGTGAGGTTGCCAGCAAGACAAATGACTCAGCAGGTGATGGGACTACAACCGCATCTGTCCTGGCTCGTGAGATCATAAAATTGGGCCTGCTGAGTGTTACTTCAGGGGCAAACCCAGTATCTATCAAAAAGGGCATAGATAAGACCGTGCACAGTTTAGTTGACGAACTTGAGAAGAAGTCAAGGCCTGTGAAGGGCAGTGGTGATATTAAAGCTGTTGCTGCCA]
consensusID : consensus_15369#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 437 fasta sequence
[TTCTTGTGGGCACCGNTGANATNATTGTCACACANGTTGGTGTTGNAGGGGGANTGCTTNTTGGAAAGTTGCAGGNGGGTNNATNGGTGGTTGGCTACATGCGNTGGCTGACANCACGAGAACTTGGTACAGGCTGGTGTGATTGACCCTGNAAAGGTGACAAGATGTNCGTTGCAAAACGCAGCCTNGGTNGCTGGAATGGTACTAACCACGCAAGCCATCGTTNTGGAGAAGCCAATGAAGAAGGCGTCGGCGGCTTCCGGGGCACCAGAAGGTTCTCTTNCCATGTGAGGAGGTGATCATATCTCCCATTCTATTCTACCTGTGGTGTGTGTTTTGCTACTGCGTCGTAACAACAAAACAGTACAAGNTNTTTAGGCAGAGGTAAACTTGTGAACAAGAAGNAATAAATCAATCTAGTCCAAGTGAANNAANAA]
[+] EMBL AA751470 [TTCTTGTGGGCACCGNTGANATNATTGTCACACANGTTGGTGTTGNAGGGGGANTGCTTNTTGGAAAGTTGCAGGNGGGTNNATNGGTGGTTGGCTACATGCGNTGGCTGACANCACGAGAACTTGGTACAGGCTGGTGTGATTGACCCTGNAAAGGTGACAAGATGTNCGTTGCAAAACGCAGCCTNGGTNGCTGGAATGGTACTAACCACGCAAGCCATCGTTNTGGAGAAGCCAATGAAGAAGGCGTCGGCGGCTTCCGGGGCACCAGAAGGTTCTCTTNCCATGTGAGGAGGTGATCATATCTCCCATTCTATTCTACCTGTGGTGTGTGTTTTGCTACTGCGTCGTAACAACAAAACAGTACAAGNTNTTTAGGCAGAGGTAAACTTGTGAACAAGAAGNAATAAATCAATCTAGTCCAAGTGAANNAANAA]
consensusID : consensus_15369#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 223 fasta sequence
[ACTAATAGCACACAATGCTGGAGTTGAAGGGGAAGTGATTGTAGAAAAGATCAAGGAGAGTGAATGGGAGGTTGGCTACAATGCGATGGCTGACAGACACGAGAACTTGGTACAGGCTGGTGTGATTGTCCCTGCAAAGGTGATAAGATGTGCGTTCGAAAACCTAGGCCTCGTGCTGATGCACTACACCGAGTATCGTGTGAGACGAAGAGAGCTCGCGTCG]
[+] EMBL AA751149 [ACTAATAGCACACAATGCTGGAGTTGAAGGGGAAGTGATTGTAGAAAAGATCAAGGAGAGTGAATGGGAGGTTGGCTACAATGCGATGGCTGACAGACACGAGAACTTGGTACAGGCTGGTGTGATTGTCCCTGCAAAGGTGATAAGATGTGCGTTCGAAAACCTAGGCCTCGTGCTGATGCACTACACCGAGTATCGTGTGAGACGAAGAGAGCTCGCGTCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15369#2 ------------------------------------------------------------
consensus_15369#3 ------------------------------------------------------------
consensus_15369#0 NTNTNCAACCAAAAAAAGTCNAATTCTGAAAACAAGAGAGAGATCACAGCAGCCGCCGCC 60
consensus_15369#1 ------------------------------------------------------------
consensus_15369#2 ------------------------------------------------------------
consensus_15369#3 ------------------------------------------------------------
consensus_15369#0 ATCGCCATCTCTCGGACGGAAACCCTAGACGAGCGACCATGGCCACCATGCCAAGCACTT 120
consensus_15369#1 ------------------------------------------------------------
consensus_15369#2 ------------------------------------------------------------
consensus_15369#3 ------------------------------------------------------------
consensus_15369#0 GCGCCTCCTCCTCCTCCCTCTTCCTCCTCCTCCGCAGGGACAGGAGGAGCAGCAGGAGTG 180
consensus_15369#1 ------------------------------------------------------------
consensus_15369#2 ------------------------------------------------------------
consensus_15369#3 ------------------------------------------------------------
consensus_15369#0 CCAGCCTCCCCGGACCCGCCCGCCGTTTGGGGGTTGTGCGCGCCTCCGCCAAGGAGATCG 240
consensus_15369#1 ------------------------------------------------------------
consensus_15369#2 ------------------------------------------------------------
consensus_15369#3 ------------------------------------------------------------
consensus_15369#0 CCTTCGACCAGGGATCGCGATCCTCCCTCCAGGCCGGCGTCGAGAAGCTCGCCGCCGCCG 300
consensus_15369#1 ------------------------------------------------------------
consensus_15369#2 ------------------------------------------------------------
consensus_15369#3 ------------------------------------------------------------
consensus_15369#0 TCGCCGTCACCCTCGGTCCCAGAGGAAGAAATGTCGTCTTGGATGAGTTTGGGAGCCCCA 360
consensus_15369#1 ------------------------------------------------------------
consensus_15369#2 ------------------------------------------------------------
consensus_15369#3 ------------------------------------------------------------
consensus_15369#0 AAGTGGTCAATGACGGAGTTACCATTGCTCGAGCTATTGAGCTCGCTGATCCAATGGAGA 420
consensus_15369#1 ------------------------------------------------------------
consensus_15369#2 ------------------------------------------------------------
consensus_15369#3 ------------------------------------------------------------
consensus_15369#0 ATGCCGGTGCTGCTTTGATTCGTGAGGTTGCCAGCAAGACAAATGACTCAGCAGGTGATG 480
consensus_15369#1 ------------------------------------------------------------
consensus_15369#2 ------------------------------------------------------------
consensus_15369#3 ------------------------------------------------------------
consensus_15369#0 GGACTACAACCGCATCTGTCCTGGCTCGTGAGATCATAAAATTGGGCCTGCTGAGTGTTA 540
consensus_15369#1 ------------------------------------------------------------
consensus_15369#2 ------------------------------------------------------------
consensus_15369#3 ------------------------------------------------------------
consensus_15369#0 CTTCAGGGGCAAACCCAGTATCTATCAAAAAGGGCATAGATAAGACCGTGCACAGTTTAG 600
consensus_15369#1 ------------------------------------------------------------
consensus_15369#2 ------------------------------------------------------------
consensus_15369#3 ------------------------------------------------------------
consensus_15369#0 TTGAGGAACTTGAGAAGAAGTCAAGGCCTGTGAAGGGCAGTGGTGATATTAAAGCTGTTG 660
consensus_15369#1 ------------------------------------------------------------
consensus_15369#2 ------------------------------------------------------------
consensus_15369#3 ------------------------------------------------------------
consensus_15369#0 CTGCCATATCTGCTGGAAATGATGACTTCGTCGGTACCATGATCGCTGAGGCTATTGACA 720
consensus_15369#1 ------------------------------------------------------------
consensus_15369#2 ------------------------------------------------------------
consensus_15369#3 ------------------------------------------------------------
consensus_15369#0 AGGTTGGCCCTGATGGTGTTCTTTCGATCGAGTCATCATCATCTTGTGAGACCACCGTTG 780
consensus_15369#1 ------------------------------------------------------------
consensus_15369#2 ------------------------------------------------------------
consensus_15369#3 ------------------------------------------------------------
consensus_15369#0 AAGTTGAAGAAGGAATGGAGATTGACAGAGGATATATCTCTCCTCAGTTTGTTACAAATC 840
consensus_15369#1 ------------------------------------------------------------
consensus_15369#2 ------------------------------------------------------------
consensus_15369#3 ------------------------------------------------------------
consensus_15369#0 CTGAGAAGTCACTTGTTGAGTTTGAAAATGCTAGAATTCTTGTCACTGACCAGAAGATTT 900
consensus_15369#1 ------------------------------------------------------------
consensus_15369#2 ------------------------------------------------------------
consensus_15369#3 ------------------------------------------------------------
consensus_15369#0 CTTCAATAAAAGAAATAATTCCTTTGCTGGAACAAACAACTCAACTAAGAGCACCACTCC 960
consensus_15369#1 ------------------------------------------------------------
consensus_15369#2 ------------------------------------------------------------
consensus_15369#3 ------------------------------------------------------------
consensus_15369#0 TCATAATTGCGGAGGATGTAGCTGGTGAAGCTTTGGCAACTTTAGTTGTCAACAAGCTTA 1020
consensus_15369#1 ------------------------------------------------------------
consensus_15369#2 ------------------------------------------------------------
consensus_15369#3 ------------------------------------------------------------
consensus_15369#0 GAGGAATTCTCAATGTAGCTGCGATTAAAGCACCTGGCTTTGGTGAAAGGCGTAAAGCTC 1080
consensus_15369#1 ------------------------------------------------------------
consensus_15369#2 ------------------------------------------------------------
consensus_15369#3 ------------------------------------------------------------
consensus_15369#0 TTCTTCAGGACATCGCCATCGTTACAGGTGCTGAATTTCAAGCCAAAGATCTTGGTTTAC 1140
consensus_15369#1 ------------------------------------------------------------
consensus_15369#2 ------------------------------------------------------------
consensus_15369#3 ------------------------------------------------------------
consensus_15369#0 TGGTGGAGAGTACAACCGTGGAGCAACTTGGCATAGCCCGGAAAGTGACAATCTCCCAGT 1200
consensus_15369#1 ------------------------------------------------------------
consensus_15369#2 ------------------------------------------------------------
consensus_15369#3 ------------------------------------------------------------
consensus_15369#0 CATCCACTACCATTATAGCAGATGTTGCCACCAAAGATGAGATCCAGGCAAGAATTGCAC 1260
consensus_15369#1 ----------GTATTTTTGAGGGTTTGGTTTCAACCAAAAAAAGTCCAAATCTGAAAACA 50
consensus_15369#2 ------------------------------------------------------------
consensus_15369#3 ------------------------------------------------------------
consensus_15369#0 AGCTGAAGAGAGAGCTTTCTCAGACAGACTCAGCATATGACTCTGAGAAGTTGGCTGAGA 1320
consensus_15369#1 AGAGAGAGATCACAGCAGCCGCCGCCATCGCCATCTCTCGGACGGAAACCCTAGACGAGC 110
consensus_15369#2 ------------------------------------------------------------
consensus_15369#3 ------------------------------------------------------------
consensus_15369#0 GAATCGCAAAGCTTTCTGGCGGAGTTGCGGTTATAAAGGTAGGAGCTGCAACCGAGACAG 1380
consensus_15369#1 GACCATGGCCACCATGCCAAGCACTTGCGCCTCCTCCTCCTCCCTCTTCCTCCTCCTCCG 170
consensus_15369#2 ------------------------------------------------------------
consensus_15369#3 ------------------------------------------------------------
consensus_15369#0 AGCTTGAGGATCGCAAGCTTCGTATCGAGGATGCCAAGAATGCAACATTTGCTGCTATTG 1440
consensus_15369#1 CAAGGACAGGAGGAGCAGCAGGAGTGCCAGCCTCCCCGGACCCGCCCGCCGTTTGGGGGT 230
consensus_15369#2 ------------------------------------------------------------
consensus_15369#3 ------------------------------------------------------------
consensus_15369#0 AGGAAGGTATAGTACCTGGAGGTGGTGCGGCCTATGTTCACCTGTCAAAATTTGTACCAG 1500
consensus_15369#1 TGTGCGCGCCTCCGCCAAGGAGATCGCCTTCGACCAGGGATCGCGATCCTCCCTCCAGGC 290
consensus_15369#2 -----------------------------------------------------------T 1
consensus_15369#3 ------------------------------------------------------------
consensus_15369#0 CCATCAAGGAGAAGTTGGATGACCCTGAAGAGCGCCTTGGTGCTGATATCATTCAAAAGG 1560
consensus_15369#1 CGGCGTCGAGAAGCTCGCCGCCGCCGTCGCCGTCACCCTCGGTCCCAGAGGTTCTTACTT 350
consensus_15369#2 TCTTGTGGGCACCGNTGANATNATTGTC-ACACAN-GTTGGTGTTGNAGGGGGANTGCTT 59
consensus_15369#3 -------------------ACTAATAGC-ACACAATGCTGGAGTTGAAGGGGAAGTGATT 40
consensus_15369#0 CTCTAGTGGCACCGGCAGCACTAATAGC-ACACAATGCTGGAGTTGAAGGGGAAGTGATT 1619
consensus_15369#1 CCTTACCCTTTCCTCAAATACTAGTCGCTGTACACCATTTGTCCCTTGATCTTGTTGGTT 410
* * * * *** * * ** **
consensus_15369#2 NTTGGAAAGTTGCAGGNGGGTNNATNGGTGGTTGGCTACA-TGCGNTGGCTGACAN-CAC 117
consensus_15369#3 GTAGAAAAGATCAAGGAGAGTGAATGGGAGGTTGGCTACAATGCGATGGCTGACAGACAC 100
consensus_15369#0 GTAGAAAAGATCAAGGAGAGTGAATGGGAGGTTGGCTACAATGCGATGGCTGACAGACAC 1679
consensus_15369#1 TCTTTCTGTATGCACCTTATTAAGCCTTTTGTCCTTTTTTTTCATTCTGCTGCAGGCAGT 470
* * * ** * * ****
consensus_15369#2 GAGAACTTGGTACAGGCTGGTGTGATTGACCCTGNAAAGGTGACAAGATGTNCGTTGCAA 177
consensus_15369#3 GAGAACTTGGTACAGGCTGGTGTGATTGTCCCTGCAAAGGTGATAAGATGTGCGTTCGAA 160
consensus_15369#0 GAGAACTTGGTACAGGCTGGTGTGATTGACCCTGCAAAGGTGACAAGATGTGCGTTGCAA 1739
consensus_15369#1 GTCTGACTAATTCTT-CTTGTGGTATTGTAGGAAGAAATGTCGTCTTGGATGAGTTTGGG 529
* * * * ** *** **** *** ** * ***
consensus_15369#2 AACGCAGCCTNGGTNGCTGGAATGGTACTAACCACGCAAGCCATCGTTNTGGAGAAGCCA 237
consensus_15369#3 AACCTAGGCCTCGTGC------TGATGC--ACTACACCGAGTATCGTGT----GAGACGA 208
consensus_15369#0 AACGCAGCCTCGGTGGCTGGAATGGTACTAACCACGCAAGCCATCGTTGTGGAGAAGCCA 1799
consensus_15369#1 AGCCCCAAAGTGGTCAATGACGGAGTTACCATTGCTCGAGCTATTGAGCTCGCTGATCCA 589
* * ** * * * * ** * * *
consensus_15369#2 ATGAAGAAGGCGTCGGCGGCTTCCGGGGCACCAGAAGGTTCTCTTNCCATGTGA-GGAGG 296
consensus_15369#3 AGAGAGCTCGCGTCG--------------------------------------------- 223
consensus_15369#0 AAGAAGAAGGCGTCGGCGGCTTCCGGGGCACCAGAAGGTTCTCTTGCCATGTGAAGGAGG 1859
consensus_15369#1 ATGGAGAATGCCGGTGCTGCTTT-GATTCGTGAGGTTGCCAGCAAGACAAATGACTCAGC 648
* ** **
consensus_15369#2 TGATCATAT--CTCCCATTCTATTCTACCTGTGGTGTGTG-TTTTGCTACTGCGTCGTAA 353
consensus_15369#3 ------------------------------------------------------------
consensus_15369#0 TGATCATAT--CTCCCATTCTATTCTACCTGTGGTGTGTGATTTTGCTACTGCGTCGTAA 1917
consensus_15369#1 AGGTGATGGGACTACAACCGCATCTGTCCTGGCTCGTGAGATCATAAAATTGGGCCTGCT 708
consensus_15369#2 CAACAAAACAGTACAAGNTNTTTAGGCAGAGGTAAACTTGTGAACAAGAAGNAATAAATC 413
consensus_15369#3 ------------------------------------------------------------
consensus_15369#0 CAACAAAACAGTACAAGATGTTTAG-CAGAGGTAAACTTGTGAACAAGAAGAA-TAAATC 1975
consensus_15369#1 GAGTGTTACTTCAGGGGCAAACCCAGTATCTATCAAAAAGGGCATAGATAAGACCGTGCA 768
consensus_15369#2 AATCTAGTCCAAGTGAANNAANAA------------------------------------ 437
consensus_15369#3 ------------------------------------------------------------
consensus_15369#0 AATCTAGTCCAAGTGAAGTGAGTAGCTGTGATGGTTTCCTTTTGAAAAAAAAAAAAAAAA 2035
consensus_15369#1 CAGTTTAGTTGACGAACTTGAGAAGAAGTCAAGGCCTGTGAAGGGCAGTGGTGATATTAA 828
consensus_15369#2 --------------
consensus_15369#3 --------------
consensus_15369#0 AAAAAAAAAAAAA- 2048
consensus_15369#1 AGCTGTTGCTGCCA 842
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||