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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15411#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 699 fasta sequence
[GCTAATATGTTGTTCGGATCTGAACGCCTATATATACAGATGCTCTCCTGGGCTTTGGCCATAACCACAAACACAAAGCGTAAAGCCATCTACTAGTACCAAGTAGAGGAAATAGCTCAAGGCTTTGGAACGCAAGAACATCACCATGAAGAGCAGCACTCTCTTGGTGATCCTGGCTGTCCAGGCCGCTCTTATCATGGGAATCTTTGCTGCTGTTGCAAAAGAAAATGCCGTGGGTGAGAGCAAGGCGATCGACATCAACCCGGGGCAGCTCAAGTGCTGCAGCAACTGCAACTTCTCCTTCTCGGGGCTCTACACCTGCGACGACATCGTCAAGAAATGCGACCCTGTCTGCAAGAAATGCGCCGTCGTCAAGACCTACCCTGTGAAGATGTTCAAGTGCACCGACACCTTCCTCGGCATGTGCGGCCCTCCCTGCAAGCACTGATCGATCGATCGATCGATGATGACCTGAATAATGCATGAACGCGAGCCATTGCTGTCATATATCTGTGATCTGTGTGATATACAGTGTGCATTATATATCATATCTCGATGCTAGTATACTGTATACTCGAACAATAAGCCGTTGTCTGAGTGAAGGACCANATAANAATAATGAAGCTAGAAGGTGTTTGCAAAANNNANNNNNNNNNNNNANNNNNNNNNNNNNNNNNNANNAANNNNAAAAAAAAAACT]
[+] EMBL CF277525 [GCTAATATGTTGTTCGGATCTGAACGCCTATATATACAGATGCTCTCCTGGGCTTTGGCCATAACCACAAACACAAAGCGTAAAGCCATCTACTAGTACCAAGTAGAGGAAATAGCTCAAGGCTTTGGAACGCAAGAACATCACCATGAAGAGCAGCACTCTCTTGGTGATCCTGGCTGTCCAGGCCGCTCTTATCATGGGAATCTTTGCTGCTGTTGCAAAAGAAAATGCCGTGGGTGAGAGCAAGGCGATCGACATCAACCCGGGGCAGCTCAAGTGCTGCAGCAACTGCAACTTCTCCTTCTCGGGGCTCTACACCTGCGACGACATCGTCAAGAAATGCGACCCTGTCTGCAAGAAATGCGCCGTCGTCAAGACCTACCCTGTGAAGATGTTCAAGTGCACCGACACCTTCCTCGGCATGTGCGGCCCTCCCTGCAAGCACTGATCGATCGATCGATCGATGATGACCTGAATAATGCATGAACGCGAGCCATTGCTGTCATATATCTGTGATCTGTGTGATATACAGTGTGCATTATATATCATATCTCGATGCTAGTATAC ]
[+] EMBL AU093445 [ CCATCTACTAGTACCAAGTAGAGGAAATAGCTCAAGGCTTTGGAACGCAAGAACATCACCATGAAGAGCAGCACTCTCTTGGTGATCCTGGCTGTCCAGGCCGCTCTTATCATGGGAATCTTTGCTGCTGTTGCAAAAGAAAATGCCGTGGGTGAGAGCAAGGCGATCGACATCAACCCGGGGCAGCTCAAGTGCTGCAGCAACTGCAACTTCTCCTTCTCGGGGCTCTACACCTGCGACGACATCGTCAAGAAATGCGACCCTGTCTGCAAGAAATGCGCCGTCGTCAAGACCTACCCTGTGAAGATGTTCAAGTGCACCGACACCTTCCTCGGCATGTGCGGCCCTCCCTGCAAGCACTGATCGATCGATCGATCGATGAT ]
[+] EMBL CA758721 [ ACTAGTACCAAGTAGAGGAAATAGCTCAAGGCTTTGGAACGCAAGAACATCACCATGAAGAGCAGCACTCTCTTGGTGATCCTGGCTGTCCAGGCCGCTCTTATCATGGGAATCTTTGCTGCTGTTGCAAAAGAAAATGCCGTGGGTGAGAGCAAGGCGATCGACATCAACCCGGGGCAGCTCAAGTGCTGCAGCAACTGCAACTTCTCCTTCTCGGGGCTCTACACCTGCGACGACATCGTCAAGAAATGCGACCCTGTCTGCAAGAAATGCGCCGTCGTCAAGACCTACCCTGTGAAGATGTTCAAGTGCACCGACACCTTCCTCGGCATGTGCGGCCCTCCCTGCAAGCACTGATCGATCGATCGATCGATGATGACCTGAATAATGCATGAACGCGAGCCATTGCTGTCATATATCTGTGATCTGTGTGATATACAGTGTGCATTATATATCATATCTCGATGCTAGTATACTGTATACTCGAACAATAAGCCGTTGTCTGAGTGAAGGACCANATAANAATAATGAAGCTAGAAGGTGTTTGCAAAANNNANNNNNNNNNNNNANNNNNNNNNNNNNNNNNNANNAANNNNAAAAAAAAAACT]
[+] EMBL OS1321836 [ AAGTAGAGGAAATAGCTCAAGGCTTTGGAACGCAAGAACATCACCATGAAGAGCAGCACTCTCTTGGTGATCCTGGCTGTCCAGGCCGCTCTTATCATGGGAATCTTTGCTGCTGTTGCAAAAGAAAATGCCGTGGGTGAGAGCAAGGCGATCGACATCAACCCGGGGCAGCTCAAGTGCTGCAGCAACTGCAACTTCTCCTTCTCGGGGCTCTACACCTGCGACGACATCGTCAAGAAATGCGACCCTGTCTGCAAGAAATGCGCCGTCGTCAAGACCTACCCTGTGAGGATGTTCAAGTGCACCGACACCTTCCTCGGg ]
consensusID : consensus_15411#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 15 consensus length = 697 fasta sequence
[ATGGACTGAAGGGAGTAGAAAAACCACAAACACAAAGCGTAAAGCCATCTACTAGTACCAAGTAGAGGAAATAGCTCAAGGCTTTGGAACGCAAGAACATCACCATGAAGAGCAGCACTCTCTTGGTGATCCTGGCTGTCCAGGCCGCTCTTATCATGGGAATCTTTGCTGCTGTTG-CAAAAGAAAATGCCGTGGGTGAGAGCAAGGCGATCGACATCAACCCGGGGCAGCTCAAGTGCTGCAGCAACTGCAACTTCTCCTTCTCGGGGCTCTACACCTGCGACGACATCGTCAAGAAATGCGACCCTGTCTGCAAGAAATGCGCCGTCGTCAAGACCTACCCTGTG-AAGATGTTCAAGTGCACCGACA-CCTTCCTCGGCATGTGCGGCCCT-CCCTGCAAGCACTGATCGATCGATCGATCGATGATGACCTGAATAATGCATGAACGCGAGCCATTGCTGTCATATATCTGTGATCTGTGTGATATACAGTGTGCATTATATATCATATCTCGATGCTAGTATACTGTATACTCGAACAATAAG-CCGTTGTCTGAGTGAAGGACCAAATAAAAATAATGAAGC-TAGAA-GGTGTTTGCATGTTACTTGGGAGACTTGTGTTTCCCCTGGACTTGAGAGGGACATGAGAACAATGTTAATATTATCTTGTGATAATAGATATATATTGTCTAAAAAAA]
[+] EMBL CF336632 [ATGGACTGAAGGGAGTAGAAAAACCACAAACACAAAGCGTAAAGCCATCTACTAGTACCAAGTAGAGGAAATAGCTCAAGGCTTTGGAACGCAAGAACATCACCATGAAGAGCAGCACTCTCTTGGTGATCCTGGCTGTCCAGGCCGCTCTTATCATGGGAATCTTTGCTGCTGTTG CAAAAGAAAATGCCGTGGGTGAGAGCAAGGCGATCGACATCAACCCGGGGCAGCTCAAGTGCTGCAGCAACTGCAACTTCTCCTTCTCGGGGCTCTACACCTGCGACGACATCGTCAAGAAATGCGACCCTGTCTGCAAGAAATGCGCCGTCGTCAAGACCTACCCTGTG AAGATGTTCAAGTGCACCGACA CCTTCCTCGGCATGTGCGGCCCT CCCTGCAAGCACTGATCGATCGATCGATCGATGATGACCTGAATAATGCATGAACGCGAGCCATTGCTGTCATATATCTGTGATCTGTGTGATATACAGTGTGCATTATATATCATATCTCGATGCTAGTATACTGTATACTCGAACAATAAG CCGTTGTCTGAGTGAAGGACCAAATAAAAAT ]
[+] EMBL AB059238 [ AAACACAAAGCGTAAAGCCATCTACTAGTACCAAGTAGAGGAAATAGCTCAAGGCTTTGGAACGCAAGAACATCACCATGAAGAGCAGCACTCTCTTGGTGATCCTGGCTGTCCAGGCCGCTCTTATCATGGGAATCTTTGCTGCTGTTG CAAAAGAAAATGCCGTGGGTGAGAGCAAGGCGATCGACATCAACCCGGGGCAGCTCAAGTGCTGCAGCAACTGCAACTTCTCCTTCTCGGGGCTCTACACCTGCGACGACATCGTCAAGAAATGCGACCCTGTCTGCAAGAAATGCGCCGTCGTCAAGACCTACCCTGTG AAGATGTTCAAGTGCACCGACA CCTTCCTCGGCATGTGCGGCCCT CCCTGCAAGCACTGATCGATCGATCGATCGATGATGACCTGAATAATGCATGAACGCGAGCCATTGCTGTCATATATCTGTGATCTGTGTGATATACAGTGTGCATTATATATCATATCTCGATGCTAGTATACTGTATACTCGAACAATAAG CCGTTGTCTGAGTGAAGGACCAAATAAAAATAATGAAGC TAGAA GGTGTCTGCATGTTACTTGGGAGACTTGTGTTTCCCCTGGACTTGAGAGGGACATGAGAACAATGTTAATATTATCTTGTGACAATAGATA ]
[+] EMBL CF307868 [ AAACACAAAGCGTAAAGCCATCTACTAGTACCAAGTAGAGGAAATAGCTCAAGGCTTTGGAACGCAAGAACATCACCATGAAGAGCAGCACTCTCTTGGTGATCCTGGCTGTCCAGGCCGCTCTTATCATGGGAATCTTTGCTGCTGTTG CAAAAGAAAATGCCGTGGGTGAGAGCAAGGCGATCGACATCAACCCGGGGCAGCTCAAGTGCTGCAGCAACTGCAACTTCTCCTTCTCGGGGCTCTACACCTGCGACGACATCGTCAAGAAATGCGACCCTGTCTGCAAG AATGCGCCGTCGTCAAGACCTACCCTGGN AAGATGTTCAAGTGCACCGACA CCTTCCTCGGCATGTGCGGCCCT CCCTGCAAGCACTGATCGATCGATCGATCGATGATGACCTGAATAATGCATGAACGCGAGCCATTGCTGTCATATATCTGTGATCTGTGTGATATACAGTGTGCATTATACATCATATCTCGATGCTAGTATACTGTATACTCGAACAATAAG CCGTTGTCTGAGTGAAGGACCAAA ]
[+] EMBL AK059239 [ CACAAAGCGTAAAGCCATCTACTAGTACCAAGTAGAGGAAATAGCTCAAGGCTTTGGAACGCAAGAACATCACCATGAAGAGCAGCACTCTCTTGGTGATCCTGGCTGTCCAGGCCGCTCTTATCATGGGAATCTTTGCTGCTGTTG CAAAAGAAAATGCCGTGGGTGAGAGCAAGGCGATCGACATCAACCCGGGGCAGCTCAAGTGCTGCAGCAACTGCAACTTCTCCTTCTCGGGGCTCTACACCTGCGACGACATCGTCAAGAAATGCGACCCTGTCTGCAAGAAATGCGCCGTCGTCAAGACCTACCCTGTG AAGATGTTCAAGTGCACCGACA CCTTCCTCGGCATGTGCGGCCCT CCCTGCAAGCACTGATCGATCGATCGATCGATGATGACCTGAATAATGCATGAACGCGAGCCATTGCTGTCATATATCTGTGATCTGTGTGATATACAGTGTGCATTATATATCATATCTCGATGCTAGTATACTGTATACTCGAACAATAAG CCGTTGTCTGAGTGAAGGACCAAATAAAAA ]
[+] EMBL BU673925 [ gGCTTTAAGCCATCTACTAGTACCAAGTAGAGGAAATAGCTCAAGGCTTTGGAACGCAAGAACATCACCATGAAGAGCAGCACTCTCTTGGTGATCCTGGCTGTCCAGGCCGCTCTTATCATGGGAATCTTTGCTGCTGTTG CAAAAGAAAATGCCGTGGGTGAGAGCAAGGCGATCGACATCAACCCGGGGCAGCTCAAGTGCTGCAGCAACTGCAACTTCTCCTTCTCGGGGCTCTACACCTGCGACGACATCGTCAAGAAATGCGACCCTGTCTGCAAGAAATGCGCCGTCGTCAAGACCTACCCTGTG AAGATGTTCAAGTGCACCGACA CCTTCCTCGGCATGTGCGGCCCT CCCTGCAAGCACTGATCGATCGATCGATCGATGATGACCTGAATAATGCATGAACGCGAGCCATTGCTGTCATATATCTGTGATCTGTGTGATATACAGTGTGCATTATATATCATATCTCGATGCTAGTATACTGTATACTCGAACAATAAGCCCGTTGTCTGAGTGAAGGACCAAATAAAAATAATGAAGCTTGGAAGGGGGTTTGCATGTTACTTGGGAaa ]
[+] EMBL AU092803 [ CTACTAGTACCAAGTAGAGNAAATAGTCCAAGGCTTTGGAACGCAAGAACATCACCATGAAGAGCAGCA TCTCTTGGTGATCCTGGCTGTCCAGGCCGCTCTTATCATGGGAATCTTTGCTGCTGTTGCCAAAAGAAAATGCCGTGGGTGAGAGCAAGGCGATCGACATCAACCCGGGNCAGCTNAAGTGCTGCANCAACTGCAACTTCTCCTTCTCGGGGCTCTACACCTGCGACGACATCGTCAAGAAATGCGACCCTGTCTGCAAGAAATGCGCCGTCGTCAAGACCTACCCTGTG AAGATGTTCAAGTGCACCGACA CCTTCCTCGGCATGTGCGGCCCT CCCTGCAAGCACTGATCGATCGATCGATCGATGATGACCTGAATAATGCATGAACGCGAGCCATTGCTGTCATATATCTGTGATCTGTGTGATATACAGTGTGCATTATATATCATATCTCGATGCTAGTATACTGTATACTCGAACAATAAG CCGTTGTCTGAGTGAAGGACCAAATAAAAATAATGAAGC TAGAA GGTGTTTGCATGTTAaaaa ]
[+] EMBL CB682786 [ AAATACCTCAAGGCTTTGGAACGCAAGAACATCACCATGAAGAGCAGCACTCTCTTGGTGATCCTGGCTGTCCAGGCCGCTCTTATCATGGGAATCTTTGCTGCTGTTG CAAAAGAAAATGCCGTGGGTGAGAGCAAGGCGATCGACATCAACCCGGGGCAGCTCAAGTGCTGCAGCAACTGCAACTTCTCCTTCTCGGGGCTCTACACCTGCGACGACATCGTCAAGAAATGCGACCCTGTCTGCAAGAAATGCGCCGTCGTCAAGACCTACCCTGTG AAGATGTTCAAGTGCACCGACA CCTTCCTCGGCATGTGCGGCCCT CCCTGCAAGCACTGATCGATCGATCGATCGATGATGACCTGAATAATGCATGAACGCGAGCCATTGCTGTCATATATCTGTGATCTGTGTGATATACAGTGTGCATTATATATCATATCTCGATGCTAGTATACTGTATACTCGAACAATAAG CCGTTGTCTGAGTGAAGGACCAAATAAAAATAATGAAGC TAGAA GGTGTTTGCATGTTACTTGGGAGACTTGTGTTTCCCCTGGACTTGAGAGGGACATGAGAACAA ]
[+] EMBL CB096984 [ AATAGCTCAAGGCTTTGGAACGCAAGAACATCACCATGAAGAGCAGCACTCTCTTGGTGATCCTGGCTGTCCAGGCCGCTCTTATCATGGGAATCTTTGCTGCTGTTG CAAAAGAAAATGCCGTGGGTGAGAGCAAGGCGATCGACATCAACCCGGGGCAGCCCAAGTGCTGCAGCAACTGCAACTTCTCCTTCTCGGGGCTCTACACCTGCGACGACATCGTCAAGAAATGCGACCCTGTCTGCAAGAAATGCGCCGTCGTCAAGACCTACCCTGTG AAGATGTTCAAGTGCACCGACA CCTTCCTCGGCATGTGCGGCCCT CCCTGCAAGCACTGATCGATCGATCGATCGATGATGACCTGAATAATGCATGAACGCGAGCCATTGCTGTCATATATCTGTGATCTGTGTGATATACAGTGTGCATTATATATCATATCTCGATGCTAGTATACTGTATACTCGAACAATACG CCGTTGTCTGAGTGAAGGACCAAATAAAAATAATGAAGC TAGAA GGTGTTTGCATGTTACTTGGGAGACTTGTGTTTCCCCTGGACTTGAGAGGGACATGAGAACAATGGTAATATTATCTTGTGATAATAGATATATATTGTCcatattat]
[+] EMBL CK085165 [ TTGGTGATCCTGGCTGTCCAGGCCGCTCTTATCATGGGAATCTTTGCTGCTGTTG CAAAAGAAAATGCCGTGGGTGAGAGCAAGGCGATCGACATCAACCCGGGGCAGCTCAAGTGCTGCAGCAACTGCAACTTCTCCTTCTCGGGGCTCTACACCTGCGACGACATCGTCAAGAAATGCGACCCTGTCTGCAAGAAATGCGCCGTCGTCAAGACCTACCCTGTG AAGATGTTCAAGTGCACCGACA CCTTCCTCGGCATGTGCGGCCCT CCCTGCAAGCACTGATCGATCGATCGATCGATGATGACCTGAATAATGCATGAACGCGAGCCATTGCTGTCATATATCTGTGATCTGTGTGATATACAGTGTGCATTATATATCATATCTCGATGCTAGTATACTGTATACTCGAACAATAAG CCGTTGTCTGAGTGAAGGACCAAATAAAAATAATGAAGC TAG ]
[-] EMBL CF307869 [ ACCCTGTCTGCAAGAAATGCGCCGTCGTCAAGACCTACCCTGTGNAAGATGTTCAAGTGCACCGACACCCTTCCTCGGCATGTGCGGCCCT CCCTGCAAGCACTGATCGATCGATCGATCGATGATGACCTGAATAATGCATGAACGCGAGCCATTGCTGTCATATATCTGTGATCTGTGTGATATACAGTGTGCATTATACATCATATCTCGATGCTAGTATACTGTATACTCGAACAATAAG CCGTTGTCTGAGTGAAGGACCAAATAAAAATAATGAAGC TAGAA GGTGTTTGCATGTTACTTGGGAGACTTGTGTTTCCCCTGGACTTGAGAGGGACATGAGAACAATGTTAATATTATCTTGTGATAATAGATATATATTGTCTAAAAAAA]
[-] EMBL BI306073 [ ACCGACA CCTTCCTCGGCATGTGCGGCCCT CCCTGCAAGCACTGATCGATCGATCGATCGATGATGACCTGAATAATGCATGAACGCGAGCCATTGCTGTCATATATCTGTGATCTGTGTGATATACAGTGTGCATTATATATCATATCTCGATGCTAGTATACTGTATACTCGAACAATAAG CCGTTGTTTGAGTGAAGGACCAAATAAAAATAATGAAGC TAGAA GGTGTTTGCATGTTACTTGGGAGACTTGTGTTTCCCCTGGACTTGAGAGGGACATGAGAACAATGTTAATATTATCTTGTGATAATAGATAT ]
[+] EMBL OSS3139A [ CCTTCCTCGGCATGTGCGGNCCT CCCTGCAAGCACTGATCGATCGATCGATCGATGATGACCTGAATAATGNATGAACGCGAGCCATTGCTGTCATATATCTGTGATCTGTGTGATATACAGTGTGCATTATATATCATATCTCGATGCTAGTATACTGTATACTCGAACAATAAG CCGTTGTCTGAGTNAAGGACCAAATAAAAATAATGAAGC TAGAA GGTGTCTGCATGTTACTTGGGAGACTTGTGTTTCCCCTGGACTTGAGAGGGn ]
[+] EMBL OSS3114A [ CCTTCCTCGGCATGTGCGGCCCT CCCTGCAAGCACTGATCGATCGATCGATCGATGATGACCTGAATAATGCATGAACGCGAGCCATTGCTGTCATATATCTGTGATCTGTGTGATATACAGTGTGCATTATATATCATATCTCGATGCTAGTATACTGTATACTCGAACAATAAG CCGTTGTCTGAGTGAAGGACCAAATAAAAATAATGAAGC ]
[-] EMBL CF336631 [ GTGCGGCCCTCCCCTGCAAGCACTGATCGATCGATCGATCGATGATGACCTGAATAATGCATGAACGCGAGCCATTGCTGTCATATATCTGTGATCTGTGTGATATACAGTGTGCATTATATATCATATCTCGATGCTAGTATACTGTATACTCGAACAATAAG CCGTTGTCTGAGTGAAGGACCAAATAAAAATAATGAAGC TAGAA GGTGTTTGCATGTTACTTGGGAGACTTGTGTTTCCCCTGGACTTGAGAGGGACATGAGAACAATGTTAATATTATCTTGTGATAATAGATATATATTGTCTAAAAAAA]
[-] EMBL CF277524 [ CGGCCCTCCCCTGCAAGCACTGATCGATCGATCGATCGATGATGACCTGAATAATGCATGAACGCGAGCCATTGCTGTCATATATCTGTGATCTGTGTGATATACAGTGTGCATTATATATCATATCTCGATGCTAGTATACTGTATACTCGAACAATAAG CCGTTGTCTGAGTGAAGGACCAAATAAAAATAATGAAGC TAGAA GGTGTTTGCATGTTACTTGGGAGACTTGTGTTTCCCCTGGACTTGAGAGGGACATGAGAACAATGTTAATATTATCTTGTGATAATAGATATATATTGTCTAAAAAAA]
consensusID : consensus_15411#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 440 fasta sequence
[CTGAAGGAGTAGAAACGAGCCATTGCTGTCATATATCTGTGATCTGTGTGATATACAGTGTGCATTATATATCATATCTCGATGCTAGTATACTGTATACTCGAACANTNNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANCCCCTTTTTTTGCCTTTAAAAAAAAAAGGGAAAAATCGGGGCCAAAAAAAAAAAACCCCCAAAAAAAAAAGGAAAAAAAAAAAAAAGGGGGGGGTTTAAAAAAAGGGAAAAAGGAAAAAAACGGGGGGAAAAAAAAAAAAAAGGCTTGAAAAAAAAACCCCTTTTCCAAAAGGGGGAAAAAAAAAAAAAAGCCCAAAAAAAACCCCTTTAA]
[+] EMBL CF307599 [CTGAAGGAGTAGAAACGAGCCATTGCTGTCATATATCTGTGATCTGTGTGATATACAGTGTGCATTATATATCATATCTCGATGCTAGTATACTGTATACTCGAACANTNNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANCCCCTTTTTTTGCCTTTAAAAAAAAAAGGGAAAAATCGGGGCCAAAAAAAAAAAACCCCCAAAAAAAAAAGGAAAAAAAAAAAAAAGGGGGGGGTTTAAAAAAAGGGAAAAAGGAAAAAAACGGGGGGAAAAAAAAAAAAAAGGCTTGAAAAAAAAACCCCTTTTCCAAAAGGGGGAAAAAAAAAAAAAAGCCCAAAAAAAACCCCTTTAA]
consensusID : consensus_15411#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 302 fasta sequence
[TCCGCCCACGCNTCCGAAAGCGTAAAGCCATCTACTAGTACCAAGTAGAGGAAATAGCTCAAGGCTTTGGAACGCAAGAACATCACCATGAAGAGCAGCACTCTNTTGGTGATCCTGGCTGTCCAGGCCGCTCTTATCATGGGAATCTTTGCTGCTGTTGCAAAAGAAAATGCCGTGGGTGAGAGCAAGGCGATCGNCATCAACCCGGGGCAGCTCAAGTGCTGCAGCAACTGCAACTTCTCCTTCTCGGGGNTCTACACCTGCGACGNCATCGTCAAGAAATGCGACCCTGTNTGCAAGAA]
[+] EMBL C28025 [TCCGCCCACGCNTCCGAAAGCGTAAAGCCATCTACTAGTACCAAGTAGAGGAAATAGCTCAAGGCTTTGGAACGCAAGAACATCACCATGAAGAGCAGCACTCTNTTGGTGATCCTGGCTGTCCAGGCCGCTCTTATCATGGGAATCTTTGCTGCTGTTGCAAAAGAAAATGCCGTGGGTGAGAGCAAGGCGATCGNCATCAACCCGGGGCAGCTCAAGTGCTGCAGCAACTGCAACTTCTCCTTCTCGGGGNTCTACACCTGCGACGNCATCGTCAAGAAATGCGACCCTGTNTGCAAGAA]
consensusID : consensus_15411#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 257 fasta sequence
[ATCGATCGNTCGATCGATGATGNCCTGAATAATGCATGAACGCGNGCCATTGCTGTCATATATCTGTGATCTGTGTGATATACAGTGTGCATTATATANCATATCTCGATGCTAGTATACTGTATACTCGAACAATAAGCCGTTGTNTGAGTGAAGGNCCAAATAAAAATAATGAAGCTAGAAGGTGTTTGCATGTTAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU093446 [ATCGATCGNTCGATCGATGATGNCCTGAATAATGCATGAACGCGNGCCATTGCTGTCATATATCTGTGATCTGTGTGATATACAGTGTGCATTATATANCATATCTCGATGCTAGTATACTGTATACTCGAACAATAAGCCGTTGTNTGAGTGAAGGNCCAAATAAAAATAATGAAGCTAGAAGGTGTTTGCATGTTAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15411#1 -----------------------------------------ATGGACTGAAGGGAGTAGA 19
consensus_15411#3 -----------------------------------------------------------T 1
consensus_15411#0 GCTAATATGTTGTTCGGATCTGAACGCCTATATATACAGATGCTCTCCTGGGCTTTGGCC 60
consensus_15411#2 ------------------------------------------------------------
consensus_15411#4 ---------------------------------------------ATCGATCGNTCGATC 15
consensus_15411#1 AAAACCACAAACAC-AAAGCGTA-AAGCCATCTACTAGTACCAAGTAGAGGAAATAGCTC 77
consensus_15411#3 CCGCCCACGCNTCCGAAAGCGTA-AAGCCATCTACTAGTACCAAGTAGAGGAAATAGCTC 60
consensus_15411#0 ATAACCACAAACAC-AAAGCGTA-AAGCCATCTACTAGTACCAAGTAGAGGAAATAGCTC 118
consensus_15411#2 ---------CTGAAGGA---GTAGAAACGAGCCATTGCTGTCATATATCTGTGATCTGTG 48
consensus_15411#4 GATGATGNCCTGAATAATGCATGAACGCGNGCCATTGCTGTCATATATCTGTGATCTGTG 75
* * * * * * * * ** ** * ** *
consensus_15411#1 AAGGCTTTGGAACGCAAGA-ACATCAC-CATGAAGAGCAGCACTCTCTTGGTGATCCTGG 135
consensus_15411#3 AAGGCTTTGGAACGCAAGA-ACATCAC-CATGAAGAGCAGCACTCTNTTGGTGATCCTGG 118
consensus_15411#0 AAGGCTTTGGAACGCAAGA-ACATCAC-CATGAAGAGCAGCACTCTCTTGGTGATCCTGG 176
consensus_15411#2 TGATATACAGTGTGCATTATATATCATATCTCGATGCTAGTATACTGTATACTCGAACAN 108
consensus_15411#4 TGATATACAGTGTGCATTATATANCATATCTCGATGCTAGTATACTGTATACTCGAACAA 135
* * *** * * * ** * * ** * ** *
consensus_15411#1 CTGTCCAGGCCGCTCTTATCATGGGAATCTTTGCTGCTGTTGCAAAAGAAAATGCCGTGG 195
consensus_15411#3 CTGTCCAGGCCGCTCTTATCATGGGAATCTTTGCTGCTGTTGCAAAAGAAAATGCCGTGG 178
consensus_15411#0 CTGTCCAGGCCGCTCTTATCATGGGAATCTTTGCTGCTGTTGCAAAAGAAAATGCCGTGG 236
consensus_15411#2 TNNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 168
consensus_15411#4 TAAGCCGTTGTNTGAGTGAAGGNCCAAATAAAAATAATGAAGCTAGAAGGTGTTTGCATG 195
** * *
consensus_15411#1 GTGAGAGCAAGGCGATCGACATCAACCCGGGGCAGCTCAAGTGCTGCAGCAACTGCAACT 255
consensus_15411#3 GTGAGAGCAAGGCGATCGNCATCAACCCGGGGCAGCTCAAGTGCTGCAGCAACTGCAACT 238
consensus_15411#0 GTGAGAGCAAGGCGATCGACATCAACCCGGGGCAGCTCAAGTGCTGCAGCAACTGCAACT 296
consensus_15411#2 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 228
consensus_15411#4 TTAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 255
* ** * * ** * ** * ** **
consensus_15411#1 TCTCCTTCTCGGGGCTCTACACCTGCGACGA------CATCGTCAAGAAATGCGACCCTG 309
consensus_15411#3 TCTCCTTCTCGGGGNTCTACACCTGCGACGN------CATCGTCAAGAAATGCGACCCTG 292
consensus_15411#0 TCTCCTTCTCGGGGCTCTACACCTGCGACGA------CATCGTCAAGAAATGCGACCCTG 350
consensus_15411#2 NCCCCTTTTTTTGCCTTTAAAAAAAAAAGGGAAAAATCGGGGCCAAAAAAAAAAAACCCC 288
consensus_15411#4 AA---------------------------------------------------------- 257
consensus_15411#1 TCTGCAAGAAATGCGCCGTCGTCAAGACCTACCCTGTGAAGATGTTCAAGTGCACCGACA 369
consensus_15411#3 TNTGCAAGAA-------------------------------------------------- 302
consensus_15411#0 TCTGCAAGAAATGCGCCGTCGTCAAGACCTACCCTGTGAAGATGTTCAAGTGCACCGACA 410
consensus_15411#2 CAAAAAAAAAAGGAAAAAAAAAAAAAAGGGGGGGGTTTAAAAAAAGGGAAAAAGGAAAAA 348
consensus_15411#4 ------------------------------------------------------------
consensus_15411#1 CCTTCCTCGGCATGTGCGGCCCTCCCTGCAAGCACTGATCGATCGATCGATCGATGATGA 429
consensus_15411#3 ------------------------------------------------------------
consensus_15411#0 CCTTCCTCGGCATGTGCGGCCCTCCCTGCAAGCACTGATCGATCGATCGATCGATGATGA 470
consensus_15411#2 AACGGGGGGAAAAAAAAAAAAAAGGCTTGAAAAAAAAACCCCTTTTCCAAAAGGGGGAAA 408
consensus_15411#4 ------------------------------------------------------------
consensus_15411#1 CCTGAATAATGCATGAACGCGAGCCATTGCTGTCATATATCTGTGATCTGTGTGATATAC 489
consensus_15411#3 ------------------------------------------------------------
consensus_15411#0 CCTGAATAATGCATGAACGCGAGCCATTGCTGTCATATATCTGTGATCTGTGTGATATAC 530
consensus_15411#2 AAAAAAAAAAAGCCCAAAAAAAACCCCTTTAA---------------------------- 440
consensus_15411#4 ------------------------------------------------------------
consensus_15411#1 AGTGTGCATTATATATCATATCTCGATGCTAGTATACTGTATACTCGAACAATAAGCCGT 549
consensus_15411#3 ------------------------------------------------------------
consensus_15411#0 AGTGTGCATTATATATCATATCTCGATGCTAGTATACTGTATACTCGAACAATAAGCCGT 590
consensus_15411#2 ------------------------------------------------------------
consensus_15411#4 ------------------------------------------------------------
consensus_15411#1 TGTCTGAGTGAAGGACCAAATAAAAATAATGAAGCTAGAAGGTGTTTGCATGTTACTTGG 609
consensus_15411#3 ------------------------------------------------------------
consensus_15411#0 TGTCTGAGTGAAGGACCANATAANAATAATGAAGCTAGAAGGTGTTTGCAAAANNNANNN 650
consensus_15411#2 ------------------------------------------------------------
consensus_15411#4 ------------------------------------------------------------
consensus_15411#1 GAGACTTGTGTTTCCCCTGGACTTGAGAGGGACATGAGAACAATGTTAATATTATCTTGT 669
consensus_15411#3 ------------------------------------------------------------
consensus_15411#0 NNNNNNNNNANNNNNNNNNNNNNNNNNNANNAANNNNAAAAAAAAAACT----------- 699
consensus_15411#2 ------------------------------------------------------------
consensus_15411#4 ------------------------------------------------------------
consensus_15411#1 GATAATAGATATATATTGTCTAAAAAAA 697
consensus_15411#3 ----------------------------
consensus_15411#0 ----------------------------
consensus_15411#2 ----------------------------
consensus_15411#4 ----------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||