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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1664#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 854 fasta sequence
[GAGCCGGAGATGGGGGCGCAGCCTCAGCAGCAGTGGGAGGGCGCGGTGGAGGCGCGGCTGCCGTCGACACCGGCCGCCGCGGCGTGGCCGCACCTTGCCGCCTTCTGCTCGCTGCACCGCTACAACCCCGGCATCGACGTCTGCGAGCGCGTCGCCGGCGACGACGGCGTCCCCGGCTGCGTCCGCTACGTCGCCTCCCGCCCGCCACCACCACCTCCGCGAGCTAAGGATGGTGGTGACGACGACGACGACGACCAGCAGCCGGCGGCCGCCGCCGCCGGGGTGGAGACGTGGGCGCGGGAGGAGCTTCTCGAGAGGGACGACGCCCGGCGCCGCCTCGTCTACGCCGTCGTCGGCAGCAACTTGGGGTTCGGCCGCTACGTCGCCACCATGACGCTCGTCGACGACGACGGCGAGGACGTGGATGTCAACGCTCCGGCGCCGGCGGCCGCCGCCGCCGCAGGGTGCAAGCTCGTGTGGGCGTTCGAGTGCGAGCCCGTGAAGGGGTGGACAAGGGACGGCTTGCTCGCCTACCTCGACGCCGCCGGCAAGGGCATGGCCGAGCGGATCGAGGCCGCCGCCGCCGCCGCCGTCACCGACATTGCCGTAGAAGACGACGCCGCCGCCGCTCGCAGCTAGAAGAATAAATCGAGTAAACTTTTAATTACTTTTCCTGCTTAATTAGCCTCTTCTAATGATTTGTTTGGTTCATCTAGATATCAAGTCACATTTTATTACTCTTTAATTCATCGTGTAAAAGTCTAAAAGAACATATATTAGAAGGTAGTGTTCGTTTGCTAGTCAATGTGTACGTGGACGATGGTGAAATATTTTTCCATATGTGAGACTTTTTA]
[+] EMBL AK109150 [GAGCCGGAGATGGGGGCGCAGCCTCAGCAGCAGTGGGAGGGCGCGGTGGAGGCGCGGCTGCCGTCGACACCGGCCGCCGCGGCGTGGCCGCACCTTGCCGCCTTCTGCTCGCTGCACCGCTACAACCCCGGCATCGACGTCTGCGAGCGCGTCGCCGGCGACGACGGCGTCCCCGGCTGCGTCCGCTACGTCGCCTCCCGCCCGCCACCACCACCTCCGCGAGCTAAGGATGGTGGTGACGACGACGACGACGACCAGCAGCCGGCGGCCGCCGCCGCCGGGGTGGAGACGTGGGCGCGGGAGGAGCTTCTCGAGAGGGACGACGCCCGGCGCCGCCTCGTCTACGCCGTCGTCGGCAGCAACTTGGGGTTCGGCCGCTACGTCGCCACCATGACGCTCGTCGACGACGACGGCGAGGACGTGGATGTCAACGCTCCGGCGCCGGCGGCCGCCGCCGCCGCAGGGTGCAAGCTCGTGTGGGCGTTCGAGTGCGAGCCCGTGAAGGGGTGGACAAGGGACGGCTTGCTCGCCTACCTCGACGCCGCCGGCAAGGGCATGGCCGAGCGGATCGAGGCCGCCGCCGCCGCCGCCGTCACCGACATTGCCGTAGAAGACGACGCCGCCGCCGCTCGCAGCTAGAAGAATAAATCGAGTAAACTTTTAATTACTTTTCCTGCTTAATTAGCCTCTTCTAATGATTTGTTTGGTTCATCTAGATATCAAGTCACATTTTATTACTCTTTAATTCATCGTGTAAAAGTCTAAAAGAACATATATTAGAAGGTAGTGTTCGTTTGCTAGTCAATGTGTACGTGGACGATGGTGAAATATTTTTCCATATGTGAGACTTTTTA]
consensusID : consensus_1664#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 852 fasta sequence
[CGCCTCCCGCCCGCCACCACCACCTCCGCGAGCTAAGGATGGTGGTGACGACGACGACGACGACCAGCAGCCGGCGGCCGCCGCCGCCGGGGTGGAGACGTGGGCGCGGGAGGAGCTTCTCGAGAGGGACGACGCCCGGCGCCGCCTCGTCTACGCCGTCGTCGGCAGCAACTTGGGGTTCGGCCGCTACGTCGCCACCATGACGCTCGTCGACGACGACGGCGAGGACGTGGATGTCAACGCTCCGGCGCCGGCGGCCGCCGNCGNCGCAGGGTCCAAGCTCGTGTGGGCGTTCGAGTGCGAGCCCGTGAAGGGGTGGACAAGGGACGGTATGCTTGTTTTCCTTGACGACGTCGGTAAGGGTATGGTCGAGCGGATCGTGGCCGCCGTCGCCGTTGTCGTTTTTTTATTTGTTGCAAACACGACGTCGTCGTCGTTTCCCATTTTTTCCATTCCTTCAGTTATTTTCTTATTTCCTTTCTCTCCGCTACCTTACCTTTTTTTTCCTGATTTTTTTTTTCTCCCTTTTTCCCGCCTTTTTTTTTTTCCCTCACTCCTCCCTATTCATTTTCCGTAATTTTCCTTTTTTTTCATATCTCTTCCTAATGTTCTCTACCCATACCCCTTTTCTTTGCCCACATCGCCCTTTCGGTTCCCAGATTTACCCCCTTACATCATACGTTCTTCCTTTTCTTCGTTGAACTCTCAACTTCTTTTTCCCCTTGTTCTTTTTCACCCTCCACAAACACCTTTTACCTCTTTCTCCCCCTTTTTTTCTTTTTTCGCATCCCCCCCCCCTATCATCCCTTACGTTCCTTTTCCGCCTTATTCCCCCCCCTCTCTTTCCTCCCC]
[+] EMBL CA757051 [CGCCTCCCGCCCGCCACCACCACCTCCGCGAGCTAAGGATGGTGGTGACGACGACGACGACGACCAGCAGCCGGCGGCCGCCGCCGCCGGGGTGGAGACGTGGGCGCGGGAGGAGCTTCTCGAGAGGGACGACGCCCGGCGCCGCCTCGTCTACGCCGTCGTCGGCAGCAACTTGGGGTTCGGCCGCTACGTCGCCACCATGACGCTCGTCGACGACGACGGCGAGGACGTGGATGTCAACGCTCCGGCGCCGGCGGCCGCCGNCGNCGCAGGGTCCAAGCTCGTGTGGGCGTTCGAGTGCGAGCCCGTGAAGGGGTGGACAAGGGACGGTATGCTTGTTTTCCTTGACGACGTCGGTAAGGGTATGGTCGAGCGGATCGTGGCCGCCGTCGCCGTTGTCGTTTTTTTATTTGTTGCAAACACGACGTCGTCGTCGTTTCCCATTTTTTCCATTCCTTCAGTTATTTTCTTATTTCCTTTCTCTCCGCTACCTTACCTTTTTTTTCCTGATTTTTTTTTTCTCCCTTTTTCCCGCCTTTTTTTTTTTCCCTCACTCCTCCCTATTCATTTTCCGTAATTTTCCTTTTTTTTCATATCTCTTCCTAATGTTCTCTACCCATACCCCTTTTCTTTGCCCACATCGCCCTTTCGGTTCCCAGATTTACCCCCTTACATCATACGTTCTTCCTTTTCTTCGTTGAACTCTCAACTTCTTTTTCCCCTTGTTCTTTTTCACCCTCCACAAACACCTTTTACCTCTTTCTCCCCCTTTTTTTCTTTTTTCGCATCCCCCCCCCCTATCATCCCTTACGTTCCTTTTCCGCCTTATTCCCCCCCCTCTCTTTCCTCCCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1664#0 GAGCCGGAGATGGGGGCGCAGCCTCAGCAGCAGTGGGAGGGCGCGGTGGAGGCGCGGCTG 60
consensus_1664#1 ------------------------------------------------------------
consensus_1664#0 CCGTCGACACCGGCCGCCGCGGCGTGGCCGCACCTTGCCGCCTTCTGCTCGCTGCACCGC 120
consensus_1664#1 ------------------------------------------------------------
consensus_1664#0 TACAACCCCGGCATCGACGTCTGCGAGCGCGTCGCCGGCGACGACGGCGTCCCCGGCTGC 180
consensus_1664#1 ------------------------------------------------------------
consensus_1664#0 GTCCGCTACGTCGCCTCCCGCCCGCCACCACCACCTCCGCGAGCTAAGGATGGTGGTGAC 240
consensus_1664#1 -----------CGCCTCCCGCCCGCCACCACCACCTCCGCGAGCTAAGGATGGTGGTGAC 49
*************************************************
consensus_1664#0 GACGACGACGACGACCAGCAGCCGGCGGCCGCCGCCGCCGGGGTGGAGACGTGGGCGCGG 300
consensus_1664#1 GACGACGACGACGACCAGCAGCCGGCGGCCGCCGCCGCCGGGGTGGAGACGTGGGCGCGG 109
************************************************************
consensus_1664#0 GAGGAGCTTCTCGAGAGGGACGACGCCCGGCGCCGCCTCGTCTACGCCGTCGTCGGCAGC 360
consensus_1664#1 GAGGAGCTTCTCGAGAGGGACGACGCCCGGCGCCGCCTCGTCTACGCCGTCGTCGGCAGC 169
************************************************************
consensus_1664#0 AACTTGGGGTTCGGCCGCTACGTCGCCACCATGACGCTCGTCGACGACGACGGCGAGGAC 420
consensus_1664#1 AACTTGGGGTTCGGCCGCTACGTCGCCACCATGACGCTCGTCGACGACGACGGCGAGGAC 229
************************************************************
consensus_1664#0 GTGGATGTCAACGCTCCGGCGCCGGCGGCCGCCGCCGCCGCAGGGTGCAAGCTCGTGTGG 480
consensus_1664#1 GTGGATGTCAACGCTCCGGCGCCGGCGGCCGCCGNCGNCGCAGGGTCCAAGCTCGTGTGG 289
********************************** ** ******** *************
consensus_1664#0 GCGTTCGAGTGCGAGCCCGTGAAGGGGTGGACAAGGGACGGCTTGCTCGCCTACCTCGAC 540
consensus_1664#1 GCGTTCGAGTGCGAGCCCGTGAAGGGGTGGACAAGGGACGGTATGCTTGTTTTCCTTGAC 349
***************************************** **** * * *** ***
consensus_1664#0 GCCGCCGGCAAGGGCATGGCCGAGCGGATCGAGGCCGCCGCCGCCGCCGCCGTCACCGAC 600
consensus_1664#1 GACGTCGGTAAGGGTATGGTCGAGCGGATCGTGGCCGCCGTCGCCGTTGTCGTTTTTTTA 409
* ** *** ***** **** *********** ******** ***** * ***
consensus_1664#0 ATTGCCGTAGAAGACGACGCCGCCGCCGCTCGCAGCTAGAAGAATAAATCGAGTAAACTT 660
consensus_1664#1 TTTGTTGCA-AACACGACGTCGTCGTCGTTTCCCATTTTTTCCATTCCTTCAGTTATTTT 468
*** * * ** ****** ** ** ** * * * ** * *** * **
consensus_1664#0 TTAATTACTTTTC---CTGCTTAATTAGCCTCTTCTAA-TGATTTGTTTGGTTCATCTAG 716
consensus_1664#1 CTTATTTCCTTTCTCTCCGCTACCTTACCTTTTTTTTCCTGATTTTTTTTTTCTCCCTTT 528
* *** * **** * *** *** * * ** * ****** *** * **
consensus_1664#0 ATATCAAGTCACATTTTATTACTCTTTA------ATTCATCGTGTAAAAGTCTAAAAGAA 770
consensus_1664#1 TTCCCGCCTTTTTTTTTTTCCCTCACTCCTCCCTATTCATTTTCCGTAATTTTCCTTTTT 588
* * * **** * *** * ****** * ** * *
consensus_1664#0 CAT-ATATTAGAAGGTAGTGTTCGTTTGCTAGTCAATGTGTACGTGGACGATGGTGAAAT 829
consensus_1664#1 TTTCATATCTCTTCCTAATGTTC-TCTACCCATACCCCTTTTCTTTGCCCACATCGCCCT 647
* **** ** ***** * * * * * * * * * * * * *
consensus_1664#0 ATT--TTTCCATATGTGAGACTTTTTA--------------------------------- 854
consensus_1664#1 TTCGGTTCCCAGATTTACCCCCTTACATCATACGTTCTTCCTTTTCTTCGTTGAACTCTC 707
* ** *** ** * * ** *
consensus_1664#0 ------------------------------------------------------------
consensus_1664#1 AACTTCTTTTTCCCCTTGTTCTTTTTCACCCTCCACAAACACCTTTTACCTCTTTCTCCC 767
consensus_1664#0 ------------------------------------------------------------
consensus_1664#1 CCTTTTTTTCTTTTTTCGCATCCCCCCCCCCTATCATCCCTTACGTTCCTTTTCCGCCTT 827
consensus_1664#0 -------------------------
consensus_1664#1 ATTCCCCCCCCTCTCTTTCCTCCCC 852
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||