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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1684#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2271 fasta sequence
[CGGCTCTCTCGACCACTTCCATTCCTTCCCGGGCTCGCCGCGCCGCCACCTCGTCTCCCCCGCGGCGGCGGCGAAGGAGGCCATGCTGACCGGGCGGGAGAGCCTTGTCCGCCTCATCGGGCGGCGCCGCCGCTCCCCTCTCCCCGCCGCCCTCGCCCTCGCCGTGCCCCCCTCCCGCTCCCTTCAGGATGATGCGGCCGATGCGGAGAGGGAAGCCGCGGCGGGTGGTTCTTCGTCGGGAGGGGGCGACGCCGCCGGCGCGGCGGGGTGGGTGGCGTGCCCCGTCTGCGGCGAGTCCATCCGCGGCACGGATTACTGCGTCAACACGCACCTCGATATATGCCTTACAAGAGGAACAAAACGGAAGTTAACTCAGAGCACCCTTCTTGATTTCAGTTTCAGTAGAAAAGCCACAGATGATTACGCTTTGAAAAATTTGAACACCAGTGATGAGGCAGAGCATATGGAACCGACCGATGGAAATGTATCTAGCGATGGAGCTTTCTTCTCGTTGAATAATGACAAGGTCAATTCAAAGGGAAGTGCTAATGCTTCATCACCTGGCTGCCTGCATGGCTCTCCTGACATCTCGGAGACATGTGATACCTGTCTACCACCCAATGTATTATTACCATATACAGAAAATACTGCAAACAATGGTGTAGTCAAGAAGTGCTTGTCCCACATGCCTTCAACTGATGCAACTTCGAGTACTATTGGTTTGCTTTCAGTGACAGATTCTAGCAATTCGGTAGTAGTTGACACTGTCATAGTGGGCAGGAGGTTCCATGAAAACATAGAATTGCAAGAAGGTGCGAGCATTACTCTTCTCCGAGATCCTCAGAATGCAAAGGACCCTGACGCTATCAAGGTGCTTTATGCAGGCTATGAATGTGAACAGATGCTTGGATACTTACCTCGAGAGCTGGCTAAAGTTTTGGCTCCTCTACTGGACAGACACTACATTGAATGCGAGGGATGTGTGGTTGGCGTGCCTGAACAACAACTTGATCATGTTCCCATCCAGCTTAAGTGCCAGAAATATACAGATGAAAATGAGACATATGATGATCTGAAGCATCCACAGTTCTTATGGGAAAATTTCATATGTGCTGTTGGAAATGGAAATTTGCTGCAACCTAGCAGTACGAGATACCAGACAAATTTTAGTTCGATGATAACAGATGTGATGGCAAACCATTCACACCTTTTTAGTGACAAGGAAAAGTCATTTTTAGACTCTTTTCAGTTGTTACCAGATGATGGACAAAGGCTCTTTGTTAGGATCTACACTCGAAAAGGGCCATGGTTTCGAATGAGCAGTATCTCATATCGTGAGATATCAGATCTGGGGCAGGCAGCCATGGAACTTAAGTTGGCAGGTTATATTGACATGATATCCTGCATGGATGATCTATCTAACTATGATTTGAAGGAGGTTATTGACGTGCTAAGTGTTCCTGAAATGAAAGAAATTCTAAAAGAGCTCCAAAAGAATAACGTCAGCTGCACACGCCGACATGAGCTTCTTAGCACCCTTCTGTATTTATATCGTAATGGAACCTGCACAATTCTACCAAAGCGAATTCTGAAGTGGACAGGAACATGCATAAGAACTTCTGATGTGGCTGATGAACTTCTGTGGCGTGTCCAGAGACTCTTTTTTCTAAATGGTGATCAAGATCTCTCATTCTTTCTGTTAGTGGATCTTGGTCTGGTGAGGTTTCCAGTCTATGCCTGCACCATTTCTCACCGCGTTTTTCAGGAAATAAGTGATCTACTACAGTATGAAGAGGCTATTCAAGTGGCACAGGTAATGGATCAATCTCTTGATAATAGTAACATGGAAATGGTGACAAGATGCATTGAGTTATCTGAGAATCGACTAAGCACAGCACCAAAAGAAGAAAATGCAACTAGGGCTGAACCTCCCCCATCATTCTTCTCACGTTTTTCAGCTTCCTCGGTCTATTCGAAGATACTTACGTTAGGTGTATCTGTTTATGAACGAGACCGTAGGTATACTGATGCAATAAGAGTTCTAAAGAGACTACTCAGTACTGTTGCTTCGGATAGAAAGCGAGGATATTGGGCTTTGAGACTATCTGTTGATTTGGAGCACATGAATCGTTCCAATGAGAGCCTGTCAATAGCTGAAGCAGGGGTAATTGATCCATGGGTCCGTGCTGGTTCAAAGATTGCACTGCAAAGGAGAGTTGTGCGTTTAAGCAAACCTCCACGGCGCTGGAAAGTTCCCAGTTATGCCAATGC]
[+] EMBL AK120233 [CGGCTCTCTCGACCACTTCCATTCCTTCCCGGGCTCGCCGCGCCGCCACCTCGTCTCCCCCGCGGCGGCGGCGAAGGAGGCCATGCTGACCGGGCGGGAGAGCCTTGTCCGCCTCATCGGGCGGCGCCGCCGCTCCCCTCTCCCCGCCGCCCTCGCCCTCGCCGTGCCCCCCTCCCGCTCCCTTCAGGATGATGCGGCCGATGCGGAGAGGGAAGCCGCGGCGGGTGGTTCTTCGTCGGGAGGGGGCGACGCCGCCGGCGCGGCGGGGTGGGTGGCGTGCCCCGTCTGCGGCGAGTCCATCCGCGGCACGGATTACTGCGTCAACACGCACCTCGATATATGCCTTACAAGAGGAACAAAACGGAAGTTAACTCAGAGCACCCTTCTTGATTTCAGTTTCAGTAGAAAAGCCACAGATGATTACGCTTTGAAAAATTTGAACACCAGTGATGAGGCAGAGCATATGGAACCGACCGATGGAAATGTATCTAGCGATGGAGCTTTCTTCTCGTTGAATAATGACAAGGTCAATTCAAAGGGAAGTGCTAATGCTTCATCACCTGGCTGCCTGCATGGCTCTCCTGACATCTCGGAGACATGTGATACCTGTCTACCACCCAATGTATTATTACCATATACAGAAAATACTGCAAACAATGGTGTAGTCAAGAAGTGCTTGTCCCACATGCCTTCAACTGATGCAACTTCGAGTACTATTGGTTTGCTTTCAGTGACAGATTCTAGCAATTCGGTAGTAGTTGACACTGTCATAGTGGGCAGGAGGTTCCATGAAAACATAGAATTGCAAGAAGGTGCGAGCATTACTCTTCTCCGAGATCCTCAGAATGCAAAGGACCCTGACGCTATCAAGGTGCTTTATGCAGGCTATGAATGTGAACAGATGCTTGGATACTTACCTCGAGAGCTGGCTAAAGTTTTGGCTCCTCTACTGGACAGACACTACATTGAATGCGAGGGATGTGTGGTTGGCGTGCCTGAACAACAACTTGATCATGTTCCCATCCAGCTTAAGTGCCAGAAATATACAGATGAAAATGAGACATATGATGATCTGAAGCATCCACAGTTCTTATGGGAAAATTTCATATGTGCTGTTGGAAATGGAAATTTGCTGCAACCTAGCAGTACGAGATACCAGACAAATTTTAGTTCGATGATAACAGATGTGATGGCAAACCATTCACACCTTTTTAGTGACAAGGAAAAGTCATTTTTAGACTCTTTTCAGTTGTTACCAGATGATGGACAAAGGCTCTTTGTTAGGATCTACACTCGAAAAGGGCCATGGTTTCGAATGAGCAGTATCTCATATCGTGAGATATCAGATCTGGGGCAGGCAGCCATGGAACTTAAGTTGGCAGGTTATATTGACATGATATCCTGCATGGATGATCTATCTAACTATGATTTGAAGGAGGTTATTGACGTGCTAAGTGTTCCTGAAATGAAAGAAATTCTAAAAGAGCTCCAAAAGAATAACGTCAGCTGCACACGCCGACATGAGCTTCTTAGCACCCTTCTGTATTTATATCGTAATGGAACCTGCACAATTCTACCAAAGCGAATTCTGAAGTGGACAGGAACATGCATAAGAACTTCTGATGTGGCTGATGAACTTCTGTGGCGTGTCCAGAGACTCTTTTTTCTAAATGGTGATCAAGATCTCTCATTCTTTCTGTTAGTGGATCTTGGTCTGGTGAGGTTTCCAGTCTATGCCTGCACCATTTCTCACCGCGTTTTTCAGGAAATAAGTGATCTACTACAGTATGAAGAGGCTATTCAAGTGGCACAGGTAATGGATCAATCTCTTGATAATAGTAACATGGAAATGGTGACAAGATGCATTGAGTTATCTGAGAATCGACTAAGCACAGCACCAAAAGAAGAAAATGCAACTAGGGCTGAACCTCCCCCATCATTCTTCTCACGTTTTTCAGCTTCCTCGGTCTATTCGAAGATACTTACGTTAGGTGTATCTGTTTATGAACGAGACCGTAGGTATACTGATGCAATAAGAGTTCTAAAGAGACTACTCAGTACTGTTGCTTCGGATAGAAAGCGAGGATATTGGGCTTTGAGACTATCTGTTGATTTGGAGCACATGAATCGTTCCAATGAGAGCCTGTCAATAGCTGAAGCAGGGGTAATTGATCCATGGGTCCGTGCTGGTTCAAAGATTGCACTGCAAAGGAGAGTTGTGCGTTTAAGCAAACCTCCACGGCGCTGGAAAGTTCCCAGTTATGCCAATGC]
consensusID : consensus_1684#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 812 fasta sequence
[GCCAGAAATATACAGATGAAAATGAGACATATGATGATCTGAAGCATCCACAGTTCTTATGGGAAAATTTCATATGTGCTGTTGGAAATGGAAATTTGCTGCAACCTAGCAGTACGAGATACCAGACAAATTTTAGTTCGATGATAACAGATGTGATGGCAAACCATTCACACCTTTTTAGTGACAAGGAAAAGTCATTTTTAGACTCTTTTCAGTTGTTACCAGATGATGGACAAAGGCTCTTTGTTAGGATCTACACTCGAAAAGGTTGCTATATCGGCATCAAGGCCATGGTTTCGAATGAGCAGTATCTCATATCGTGAGATATCAGATCTGGGGCAGGCAGCCATGGAACTTAAGTTGGCAGGTTATATTGACATGATATCCTGCATGGATGATCTATCTAACTATGATTTGAAGGAGGTTATTGACGTGCTAAGTGTTCCTGAAATGAAAGAAATTCTAAAAGAGCTCCAAAAGAATAACGTCAGCTGCACACGCCGACATGAGCTTCTTAGCACCCTTCTGTATTTATATCGTAATGGAACCTGCACAATTCTACCAAAGCGAATTCTGAAGTGGACAGGAACATGCATAAGAACTTCTGATGTGGCTGATGAACTTCTGTGGCGTGTCCAGAGACTCTTTTTTCTAAATGGTGATCAAGATCTCTCATTCTTTCTGTTAGTGGATCTTGGTCTGGTGAGGTTTCCAGTCTATGCCTGCACCATTTCTCACCGCGTTTTTCAGGAAATAAGTGATCTACTACAGTATGAAGAGGCTATTCAAGTGGCACAGGTAATGGATCAATC]
[+] EMBL CB676872 [GCCAGAAATATACAGATGAAAATGAGACATATGATGATCTGAAGCATCCACAGTTCTTATGGGAAAATTTCATATGTGCTGTTGGAAATGGAAATTTGCTGCAACCTAGCAGTACGAGATACCAGACAAATTTTAGTTCGATGATAACAGATGTGATGGCAAACCATTCACACCTTTTTAGTGACAAGGAAAAGTCATTTTTAGACTCTTTTCAGTTGTTACCAGATGATGGACAAAGGCTCTTTGTTAGGATCTACACTCGAAAAGGTTGCTATATCGGCATCAAGGCCATGGTTTCGAATGAGCAGTATCTCATATCGTGAGATATCAGATCTGGGGCAGGCAGCCATGGAACTTAAGTTGGCAGGTTATATTGACATGATATCCTGCATGGATGATCTATCTAACTATGATTTGAAGGAGGTTATTGACGTGCTAAGTGTTCCTGAAATGAAAGAAATTCTAAAAGAGCTCCAAAAGAATAACGTCAGCTGCACACGCCGACATGAGCTTCTTAGCACCCTTCTGTATTTATATCGTAATGGAACCTGCACAATTCTACCAAAGCGAATTCTGAAGTGGACAGGAACATGCATAAGAACTTCTGATGTGGCTGATGAACTTCTGTGGCGTGTCCAGAGACTCTTTTTTCTAAATGGTGATCAAGATCTCTCATTCTTTCTGTTAGTGGATCTTGGTCTGGTGAGGTTTCCAGTCTATGCCTGCACCATTTCTCACCGCGTTTTTCAGGAAATAAGTGATCTACTACAGTATGAAGAGGCTATTCAAGTGGCACAGGTAATGGATCAATC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1684#0 CGGCTCTCTCGACCACTTCCATTCCTTCCCGGGCTCGCCGCGCCGCCACCTCGTCTCCCC 60
consensus_1684#1 ------------------------------------------------------------
consensus_1684#0 CGCGGCGGCGGCGAAGGAGGCCATGCTGACCGGGCGGGAGAGCCTTGTCCGCCTCATCGG 120
consensus_1684#1 ------------------------------------------------------------
consensus_1684#0 GCGGCGCCGCCGCTCCCCTCTCCCCGCCGCCCTCGCCCTCGCCGTGCCCCCCTCCCGCTC 180
consensus_1684#1 ------------------------------------------------------------
consensus_1684#0 CCTTCAGGATGATGCGGCCGATGCGGAGAGGGAAGCCGCGGCGGGTGGTTCTTCGTCGGG 240
consensus_1684#1 ------------------------------------------------------------
consensus_1684#0 AGGGGGCGACGCCGCCGGCGCGGCGGGGTGGGTGGCGTGCCCCGTCTGCGGCGAGTCCAT 300
consensus_1684#1 ------------------------------------------------------------
consensus_1684#0 CCGCGGCACGGATTACTGCGTCAACACGCACCTCGATATATGCCTTACAAGAGGAACAAA 360
consensus_1684#1 ------------------------------------------------------------
consensus_1684#0 ACGGAAGTTAACTCAGAGCACCCTTCTTGATTTCAGTTTCAGTAGAAAAGCCACAGATGA 420
consensus_1684#1 ------------------------------------------------------------
consensus_1684#0 TTACGCTTTGAAAAATTTGAACACCAGTGATGAGGCAGAGCATATGGAACCGACCGATGG 480
consensus_1684#1 ------------------------------------------------------------
consensus_1684#0 AAATGTATCTAGCGATGGAGCTTTCTTCTCGTTGAATAATGACAAGGTCAATTCAAAGGG 540
consensus_1684#1 ------------------------------------------------------------
consensus_1684#0 AAGTGCTAATGCTTCATCACCTGGCTGCCTGCATGGCTCTCCTGACATCTCGGAGACATG 600
consensus_1684#1 ------------------------------------------------------------
consensus_1684#0 TGATACCTGTCTACCACCCAATGTATTATTACCATATACAGAAAATACTGCAAACAATGG 660
consensus_1684#1 ------------------------------------------------------------
consensus_1684#0 TGTAGTCAAGAAGTGCTTGTCCCACATGCCTTCAACTGATGCAACTTCGAGTACTATTGG 720
consensus_1684#1 ------------------------------------------------------------
consensus_1684#0 TTTGCTTTCAGTGACAGATTCTAGCAATTCGGTAGTAGTTGACACTGTCATAGTGGGCAG 780
consensus_1684#1 ------------------------------------------------------------
consensus_1684#0 GAGGTTCCATGAAAACATAGAATTGCAAGAAGGTGCGAGCATTACTCTTCTCCGAGATCC 840
consensus_1684#1 ------------------------------------------------------------
consensus_1684#0 TCAGAATGCAAAGGACCCTGACGCTATCAAGGTGCTTTATGCAGGCTATGAATGTGAACA 900
consensus_1684#1 ------------------------------------------------------------
consensus_1684#0 GATGCTTGGATACTTACCTCGAGAGCTGGCTAAAGTTTTGGCTCCTCTACTGGACAGACA 960
consensus_1684#1 ------------------------------------------------------------
consensus_1684#0 CTACATTGAATGCGAGGGATGTGTGGTTGGCGTGCCTGAACAACAACTTGATCATGTTCC 1020
consensus_1684#1 ------------------------------------------------------------
consensus_1684#0 CATCCAGCTTAAGTGCCAGAAATATACAGATGAAAATGAGACATATGATGATCTGAAGCA 1080
consensus_1684#1 --------------GCCAGAAATATACAGATGAAAATGAGACATATGATGATCTGAAGCA 46
**********************************************
consensus_1684#0 TCCACAGTTCTTATGGGAAAATTTCATATGTGCTGTTGGAAATGGAAATTTGCTGCAACC 1140
consensus_1684#1 TCCACAGTTCTTATGGGAAAATTTCATATGTGCTGTTGGAAATGGAAATTTGCTGCAACC 106
************************************************************
consensus_1684#0 TAGCAGTACGAGATACCAGACAAATTTTAGTTCGATGATAACAGATGTGATGGCAAACCA 1200
consensus_1684#1 TAGCAGTACGAGATACCAGACAAATTTTAGTTCGATGATAACAGATGTGATGGCAAACCA 166
************************************************************
consensus_1684#0 TTCACACCTTTTTAGTGACAAGGAAAAGTCATTTTTAGACTCTTTTCAGTTGTTACCAGA 1260
consensus_1684#1 TTCACACCTTTTTAGTGACAAGGAAAAGTCATTTTTAGACTCTTTTCAGTTGTTACCAGA 226
************************************************************
consensus_1684#0 TGATGGACAAAGGCTCTTTGTTAGGATCTACACTCGAAAAGG------------------ 1302
consensus_1684#1 TGATGGACAAAGGCTCTTTGTTAGGATCTACACTCGAAAAGGTTGCTATATCGGCATCAA 286
******************************************
consensus_1684#0 -GCCATGGTTTCGAATGAGCAGTATCTCATATCGTGAGATATCAGATCTGGGGCAGGCAG 1361
consensus_1684#1 GGCCATGGTTTCGAATGAGCAGTATCTCATATCGTGAGATATCAGATCTGGGGCAGGCAG 346
***********************************************************
consensus_1684#0 CCATGGAACTTAAGTTGGCAGGTTATATTGACATGATATCCTGCATGGATGATCTATCTA 1421
consensus_1684#1 CCATGGAACTTAAGTTGGCAGGTTATATTGACATGATATCCTGCATGGATGATCTATCTA 406
************************************************************
consensus_1684#0 ACTATGATTTGAAGGAGGTTATTGACGTGCTAAGTGTTCCTGAAATGAAAGAAATTCTAA 1481
consensus_1684#1 ACTATGATTTGAAGGAGGTTATTGACGTGCTAAGTGTTCCTGAAATGAAAGAAATTCTAA 466
************************************************************
consensus_1684#0 AAGAGCTCCAAAAGAATAACGTCAGCTGCACACGCCGACATGAGCTTCTTAGCACCCTTC 1541
consensus_1684#1 AAGAGCTCCAAAAGAATAACGTCAGCTGCACACGCCGACATGAGCTTCTTAGCACCCTTC 526
************************************************************
consensus_1684#0 TGTATTTATATCGTAATGGAACCTGCACAATTCTACCAAAGCGAATTCTGAAGTGGACAG 1601
consensus_1684#1 TGTATTTATATCGTAATGGAACCTGCACAATTCTACCAAAGCGAATTCTGAAGTGGACAG 586
************************************************************
consensus_1684#0 GAACATGCATAAGAACTTCTGATGTGGCTGATGAACTTCTGTGGCGTGTCCAGAGACTCT 1661
consensus_1684#1 GAACATGCATAAGAACTTCTGATGTGGCTGATGAACTTCTGTGGCGTGTCCAGAGACTCT 646
************************************************************
consensus_1684#0 TTTTTCTAAATGGTGATCAAGATCTCTCATTCTTTCTGTTAGTGGATCTTGGTCTGGTGA 1721
consensus_1684#1 TTTTTCTAAATGGTGATCAAGATCTCTCATTCTTTCTGTTAGTGGATCTTGGTCTGGTGA 706
************************************************************
consensus_1684#0 GGTTTCCAGTCTATGCCTGCACCATTTCTCACCGCGTTTTTCAGGAAATAAGTGATCTAC 1781
consensus_1684#1 GGTTTCCAGTCTATGCCTGCACCATTTCTCACCGCGTTTTTCAGGAAATAAGTGATCTAC 766
************************************************************
consensus_1684#0 TACAGTATGAAGAGGCTATTCAAGTGGCACAGGTAATGGATCAATCTCTTGATAATAGTA 1841
consensus_1684#1 TACAGTATGAAGAGGCTATTCAAGTGGCACAGGTAATGGATCAATC-------------- 812
**********************************************
consensus_1684#0 ACATGGAAATGGTGACAAGATGCATTGAGTTATCTGAGAATCGACTAAGCACAGCACCAA 1901
consensus_1684#1 ------------------------------------------------------------
consensus_1684#0 AAGAAGAAAATGCAACTAGGGCTGAACCTCCCCCATCATTCTTCTCACGTTTTTCAGCTT 1961
consensus_1684#1 ------------------------------------------------------------
consensus_1684#0 CCTCGGTCTATTCGAAGATACTTACGTTAGGTGTATCTGTTTATGAACGAGACCGTAGGT 2021
consensus_1684#1 ------------------------------------------------------------
consensus_1684#0 ATACTGATGCAATAAGAGTTCTAAAGAGACTACTCAGTACTGTTGCTTCGGATAGAAAGC 2081
consensus_1684#1 ------------------------------------------------------------
consensus_1684#0 GAGGATATTGGGCTTTGAGACTATCTGTTGATTTGGAGCACATGAATCGTTCCAATGAGA 2141
consensus_1684#1 ------------------------------------------------------------
consensus_1684#0 GCCTGTCAATAGCTGAAGCAGGGGTAATTGATCCATGGGTCCGTGCTGGTTCAAAGATTG 2201
consensus_1684#1 ------------------------------------------------------------
consensus_1684#0 CACTGCAAAGGAGAGTTGTGCGTTTAAGCAAACCTCCACGGCGCTGGAAAGTTCCCAGTT 2261
consensus_1684#1 ------------------------------------------------------------
consensus_1684#0 ATGCCAATGC 2271
consensus_1684#1 ----------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||