cluster # 1885

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Oryza sativa
cluster # 1885 cluster # 1885 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1885#0 length = 1397 sequences # 1

consensus_1885#1 length = 304 sequences # 1

consensusID : consensus_1885#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1397
fasta sequence

                              [TCCTGGCTTCCCGTGAGCATCCGCGGTAGCTGCTCTGCTTCTTCTCCATGCCCATGGTCGACTTTCACTGAGAGTGGTGTGCTACAAACAGTAAACAGTTGGTGGCACACGGCCAGCCAGTGTGAGACTGAGAGAAGGAGCTGATCGAGATCTAGTACGTACGTAGCAATATGGTAGGAGGAGGTGGGTACAGGCAGAAGCTGATCCAGGTATGGAACGATTGGCAGGTGAGCGTGCTGGTGCTGCTCAGCCTCACCCTGCAACTCCTCTTCCTGAGCACGGCGGGCGCCCGGAGACGGGCGCAGCCGAGCTGGGGGAAGAAAACCTACTTCTGGGCTCTCTACATCGGCTCCAGGTTCATCACCACCTACTCCCTCGGCATCCTCTCCCGCGCCTCCACGGGCGACGCCAACGCCGACATCCAGGCGTTCTGGGCGTCCCTCCTCCTGTTCCACCTGGGAGGCCCCGACGACTTCACCGCCCTGTCCCTCGAGGACAACAAGCTCTGGGATCGCCGCTGCCTGGAGCTCTTCATCCAGGTCTCGACCACACTCTATGTCTTCTCCCGCTACGTGCTCGACCCCGGATTCCGCCGCTTCATCGTGCCGTTCGCCCTCATCTTCTCCGCCGGGGTGGTCAAGTACGTGGAGCAGGTCGTCGCGCTGCACCACGCGACGATGGAGGCGCTCATCAAGTCCGTCCTGGGAAAGCCCGACGCTGGCCCGGACTACGCTGACACCATTAACCGATTGGACGGGATTATGAGATCCGGCGCATTGCCGTCCCTCGACATCAAGAACGAACGAGTTGACCGCCCAAACTCTGATCCGGAGGCCAACATGCAGGTGAAAGATTACAGCGAAGATGAGCGGGTGGCCATCAAAACCATCCGGTCAGCACACTCTCTGTTCTCGAGATTCAGTGTCCTGTTCGCGGACGGCATCTTCAGCTTCGAGGACAGGCAGGAGAGCCAGGCCATGTTCTTGCGCAAGGACGCGAGGTGGGCGTTCAAGATCGTGGAGATCGAGCTGGGTTTCGCGTACGATCGGCTCTACACCAAGGCCTCGGTGTCCCGCGGGGCGAGGCTGGCGGTGCGTGTGTGCAGCCTGTCGCTCACGCTCGCCGCCGGCCTCTGGGCGGCGCTGGCGATCCTGCGGGCGAGCCAGTACCGGCAGCGGCACCGGTGCGTGACGTACGCGCTGCTCGCCGGAGCGGCGCTCAACGACGCCGCGATACTCGCCGCCCACGCCTTCTCCGTCTGGTCCCTGGTGCACGGCGACTGGCTGAGCTGGTGCTCCGTCATGCTGGTGAAGCGGAGGAGGTGGTCGGCGAGCATGGCGCAATCCAACCTCGTCACCTTCTGCCTCCGGAAGCTGCCTTCCAACAACGACTCCGAC]

[+] EMBL AK106736             [TCCTGGCTTCCCGTGAGCATCCGCGGTAGCTGCTCTGCTTCTTCTCCATGCCCATGGTCGACTTTCACTGAGAGTGGTGTGCTACAAACAGTAAACAGTTGGTGGCACACGGCCAGCCAGTGTGAGACTGAGAGAAGGAGCTGATCGAGATCTAGTACGTACGTAGCAATATGGTAGGAGGAGGTGGGTACAGGCAGAAGCTGATCCAGGTATGGAACGATTGGCAGGTGAGCGTGCTGGTGCTGCTCAGCCTCACCCTGCAACTCCTCTTCCTGAGCACGGCGGGCGCCCGGAGACGGGCGCAGCCGAGCTGGGGGAAGAAAACCTACTTCTGGGCTCTCTACATCGGCTCCAGGTTCATCACCACCTACTCCCTCGGCATCCTCTCCCGCGCCTCCACGGGCGACGCCAACGCCGACATCCAGGCGTTCTGGGCGTCCCTCCTCCTGTTCCACCTGGGAGGCCCCGACGACTTCACCGCCCTGTCCCTCGAGGACAACAAGCTCTGGGATCGCCGCTGCCTGGAGCTCTTCATCCAGGTCTCGACCACACTCTATGTCTTCTCCCGCTACGTGCTCGACCCCGGATTCCGCCGCTTCATCGTGCCGTTCGCCCTCATCTTCTCCGCCGGGGTGGTCAAGTACGTGGAGCAGGTCGTCGCGCTGCACCACGCGACGATGGAGGCGCTCATCAAGTCCGTCCTGGGAAAGCCCGACGCTGGCCCGGACTACGCTGACACCATTAACCGATTGGACGGGATTATGAGATCCGGCGCATTGCCGTCCCTCGACATCAAGAACGAACGAGTTGACCGCCCAAACTCTGATCCGGAGGCCAACATGCAGGTGAAAGATTACAGCGAAGATGAGCGGGTGGCCATCAAAACCATCCGGTCAGCACACTCTCTGTTCTCGAGATTCAGTGTCCTGTTCGCGGACGGCATCTTCAGCTTCGAGGACAGGCAGGAGAGCCAGGCCATGTTCTTGCGCAAGGACGCGAGGTGGGCGTTCAAGATCGTGGAGATCGAGCTGGGTTTCGCGTACGATCGGCTCTACACCAAGGCCTCGGTGTCCCGCGGGGCGAGGCTGGCGGTGCGTGTGTGCAGCCTGTCGCTCACGCTCGCCGCCGGCCTCTGGGCGGCGCTGGCGATCCTGCGGGCGAGCCAGTACCGGCAGCGGCACCGGTGCGTGACGTACGCGCTGCTCGCCGGAGCGGCGCTCAACGACGCCGCGATACTCGCCGCCCACGCCTTCTCCGTCTGGTCCCTGGTGCACGGCGACTGGCTGAGCTGGTGCTCCGTCATGCTGGTGAAGCGGAGGAGGTGGTCGGCGAGCATGGCGCAATCCAACCTCGTCACCTTCTGCCTCCGGAAGCTGCCTTCCAACAACGACTCCGAC]




>consensus_1885#0
TCCTGGCTTCCCGTGAGCATCCGCGGTAGCTGCTCTGCTTCTTCTCCATGCCCATGGTCG
ACTTTCACTGAGAGTGGTGTGCTACAAACAGTAAACAGTTGGTGGCACACGGCCAGCCAG
TGTGAGACTGAGAGAAGGAGCTGATCGAGATCTAGTACGTACGTAGCAATATGGTAGGAG
GAGGTGGGTACAGGCAGAAGCTGATCCAGGTATGGAACGATTGGCAGGTGAGCGTGCTGG
TGCTGCTCAGCCTCACCCTGCAACTCCTCTTCCTGAGCACGGCGGGCGCCCGGAGACGGG
CGCAGCCGAGCTGGGGGAAGAAAACCTACTTCTGGGCTCTCTACATCGGCTCCAGGTTCA
TCACCACCTACTCCCTCGGCATCCTCTCCCGCGCCTCCACGGGCGACGCCAACGCCGACA
TCCAGGCGTTCTGGGCGTCCCTCCTCCTGTTCCACCTGGGAGGCCCCGACGACTTCACCG
CCCTGTCCCTCGAGGACAACAAGCTCTGGGATCGCCGCTGCCTGGAGCTCTTCATCCAGG
TCTCGACCACACTCTATGTCTTCTCCCGCTACGTGCTCGACCCCGGATTCCGCCGCTTCA
TCGTGCCGTTCGCCCTCATCTTCTCCGCCGGGGTGGTCAAGTACGTGGAGCAGGTCGTCG
CGCTGCACCACGCGACGATGGAGGCGCTCATCAAGTCCGTCCTGGGAAAGCCCGACGCTG
GCCCGGACTACGCTGACACCATTAACCGATTGGACGGGATTATGAGATCCGGCGCATTGC
CGTCCCTCGACATCAAGAACGAACGAGTTGACCGCCCAAACTCTGATCCGGAGGCCAACA
TGCAGGTGAAAGATTACAGCGAAGATGAGCGGGTGGCCATCAAAACCATCCGGTCAGCAC
ACTCTCTGTTCTCGAGATTCAGTGTCCTGTTCGCGGACGGCATCTTCAGCTTCGAGGACA
GGCAGGAGAGCCAGGCCATGTTCTTGCGCAAGGACGCGAGGTGGGCGTTCAAGATCGTGG
AGATCGAGCTGGGTTTCGCGTACGATCGGCTCTACACCAAGGCCTCGGTGTCCCGCGGGG
CGAGGCTGGCGGTGCGTGTGTGCAGCCTGTCGCTCACGCTCGCCGCCGGCCTCTGGGCGG
CGCTGGCGATCCTGCGGGCGAGCCAGTACCGGCAGCGGCACCGGTGCGTGACGTACGCGC
TGCTCGCCGGAGCGGCGCTCAACGACGCCGCGATACTCGCCGCCCACGCCTTCTCCGTCT
GGTCCCTGGTGCACGGCGACTGGCTGAGCTGGTGCTCCGTCATGCTGGTGAAGCGGAGGA
GGTGGTCGGCGAGCATGGCGCAATCCAACCTCGTCACCTTCTGCCTCCGGAAGCTGCCTT
CCAACAACGACTCCGAC

consensusID : consensus_1885#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 304
fasta sequence

                              [CGAGTTGTGCGGAATTCGGCACGAGTTTTCCGCCGGGTGGTCAAGTACGTGGAGCAGGTCGTCGCGCTGCACCACGCGACGATGGAGGCGCTCATCAAGTCCGTCCTGGGAAAGCCCGACGCTGGCCCGGACTACGCTGACACCATTAACCGATTGGACGGGATTATGAGATCCGGCGCATTGCCGTCCCTCGACATCAAGAACGAACGAGTTGACCGCCCAAACTCTGATCCGGAGGCCAACGTGCAGGTGAAAGATTACAGCGAAGATGAGCAGGTGGCCAGCAAAACCATCCGGTCAGCAC]

[+] EMBL AA754003             [CGAGTTGTGCGGAATTCGGCACGAGTTTTCCGCCGGGTGGTCAAGTACGTGGAGCAGGTCGTCGCGCTGCACCACGCGACGATGGAGGCGCTCATCAAGTCCGTCCTGGGAAAGCCCGACGCTGGCCCGGACTACGCTGACACCATTAACCGATTGGACGGGATTATGAGATCCGGCGCATTGCCGTCCCTCGACATCAAGAACGAACGAGTTGACCGCCCAAACTCTGATCCGGAGGCCAACGTGCAGGTGAAAGATTACAGCGAAGATGAGCAGGTGGCCAGCAAAACCATCCGGTCAGCAC]




>consensus_1885#1
CGAGTTGTGCGGAATTCGGCACGAGTTTTCCGCCGGGTGGTCAAGTACGTGGAGCAGGTC
GTCGCGCTGCACCACGCGACGATGGAGGCGCTCATCAAGTCCGTCCTGGGAAAGCCCGAC
GCTGGCCCGGACTACGCTGACACCATTAACCGATTGGACGGGATTATGAGATCCGGCGCA
TTGCCGTCCCTCGACATCAAGAACGAACGAGTTGACCGCCCAAACTCTGATCCGGAGGCC
AACGTGCAGGTGAAAGATTACAGCGAAGATGAGCAGGTGGCCAGCAAAACCATCCGGTCA
GCAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1885#0      TCCTGGCTTCCCGTGAGCATCCGCGGTAGCTGCTCTGCTTCTTCTCCATGCCCATGGTCG 60
consensus_1885#1      ------------------------------------------------------------
                                                                                  

consensus_1885#0      ACTTTCACTGAGAGTGGTGTGCTACAAACAGTAAACAGTTGGTGGCACACGGCCAGCCAG 120
consensus_1885#1      ------------------------------------------------------------
                                                                                  

consensus_1885#0      TGTGAGACTGAGAGAAGGAGCTGATCGAGATCTAGTACGTACGTAGCAATATGGTAGGAG 180
consensus_1885#1      ------------------------------------------------------------
                                                                                  

consensus_1885#0      GAGGTGGGTACAGGCAGAAGCTGATCCAGGTATGGAACGATTGGCAGGTGAGCGTGCTGG 240
consensus_1885#1      ------------------------------------------------------------
                                                                                  

consensus_1885#0      TGCTGCTCAGCCTCACCCTGCAACTCCTCTTCCTGAGCACGGCGGGCGCCCGGAGACGGG 300
consensus_1885#1      ------------------------------------------------------------
                                                                                  

consensus_1885#0      CGCAGCCGAGCTGGGGGAAGAAAACCTACTTCTGGGCTCTCTACATCGGCTCCAGGTTCA 360
consensus_1885#1      ------------------------------------------------------------
                                                                                  

consensus_1885#0      TCACCACCTACTCCCTCGGCATCCTCTCCCGCGCCTCCACGGGCGACGCCAACGCCGACA 420
consensus_1885#1      ------------------------------------------------------------
                                                                                  

consensus_1885#0      TCCAGGCGTTCTGGGCGTCCCTCCTCCTGTTCCACCTGGGAGGCCCCGACGACTTCACCG 480
consensus_1885#1      ------------------------------------------------------------
                                                                                  

consensus_1885#0      CCCTGTCCCTCGAGGACAACAAGCTCTGGGATCGCCGCTGCCTGGAGCTCTTCATCCAGG 540
consensus_1885#1      ------------------------------------------------------------
                                                                                  

consensus_1885#0      TCTCGACCACACTCTATGTCTTCTCCCGCTACGTGCTCGACCCCGGATTCCGCCGCTTCA 600
consensus_1885#1      -----------------------------------------------------CGAGTTG 7
                                                                           **  *  

consensus_1885#0      TCGTGCCGTTCGCCCTCATCTTCTCCGCCGGGGTGGTCAAGTACGTGGAGCAGGTCGTCG 660
consensus_1885#1      T-GCGGAATTCGGCACGAG-TTTTCCGCCGGG-TGGTCAAGTACGTGGAGCAGGTCGTCG 64
                      * * *   **** *   *  ** ********* ***************************

consensus_1885#0      CGCTGCACCACGCGACGATGGAGGCGCTCATCAAGTCCGTCCTGGGAAAGCCCGACGCTG 720
consensus_1885#1      CGCTGCACCACGCGACGATGGAGGCGCTCATCAAGTCCGTCCTGGGAAAGCCCGACGCTG 124
                      ************************************************************

consensus_1885#0      GCCCGGACTACGCTGACACCATTAACCGATTGGACGGGATTATGAGATCCGGCGCATTGC 780
consensus_1885#1      GCCCGGACTACGCTGACACCATTAACCGATTGGACGGGATTATGAGATCCGGCGCATTGC 184
                      ************************************************************

consensus_1885#0      CGTCCCTCGACATCAAGAACGAACGAGTTGACCGCCCAAACTCTGATCCGGAGGCCAACA 840
consensus_1885#1      CGTCCCTCGACATCAAGAACGAACGAGTTGACCGCCCAAACTCTGATCCGGAGGCCAACG 244
                      *********************************************************** 

consensus_1885#0      TGCAGGTGAAAGATTACAGCGAAGATGAGCGGGTGGCCATCAAAACCATCCGGTCAGCAC 900
consensus_1885#1      TGCAGGTGAAAGATTACAGCGAAGATGAGCAGGTGGCCAGCAAAACCATCCGGTCAGCAC 304
                      ****************************** ******** ********************

consensus_1885#0      ACTCTCTGTTCTCGAGATTCAGTGTCCTGTTCGCGGACGGCATCTTCAGCTTCGAGGACA 960
consensus_1885#1      ------------------------------------------------------------
                                                                                  

consensus_1885#0      GGCAGGAGAGCCAGGCCATGTTCTTGCGCAAGGACGCGAGGTGGGCGTTCAAGATCGTGG 1020
consensus_1885#1      ------------------------------------------------------------
                                                                                  

consensus_1885#0      AGATCGAGCTGGGTTTCGCGTACGATCGGCTCTACACCAAGGCCTCGGTGTCCCGCGGGG 1080
consensus_1885#1      ------------------------------------------------------------
                                                                                  

consensus_1885#0      CGAGGCTGGCGGTGCGTGTGTGCAGCCTGTCGCTCACGCTCGCCGCCGGCCTCTGGGCGG 1140
consensus_1885#1      ------------------------------------------------------------
                                                                                  

consensus_1885#0      CGCTGGCGATCCTGCGGGCGAGCCAGTACCGGCAGCGGCACCGGTGCGTGACGTACGCGC 1200
consensus_1885#1      ------------------------------------------------------------
                                                                                  

consensus_1885#0      TGCTCGCCGGAGCGGCGCTCAACGACGCCGCGATACTCGCCGCCCACGCCTTCTCCGTCT 1260
consensus_1885#1      ------------------------------------------------------------
                                                                                  

consensus_1885#0      GGTCCCTGGTGCACGGCGACTGGCTGAGCTGGTGCTCCGTCATGCTGGTGAAGCGGAGGA 1320
consensus_1885#1      ------------------------------------------------------------
                                                                                  

consensus_1885#0      GGTGGTCGGCGAGCATGGCGCAATCCAACCTCGTCACCTTCTGCCTCCGGAAGCTGCCTT 1380
consensus_1885#1      ------------------------------------------------------------
                                                                                  

consensus_1885#0      CCAACAACGACTCCGAC 1397
consensus_1885#1      -----------------