cluster # 1953

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Oryza sativa
cluster # 1953 cluster # 1953 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1953#0 length = 577 sequences # 1

consensus_1953#1 length = 330 sequences # 1

consensusID : consensus_1953#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 577
fasta sequence

                              [AGCAGGCAAAGCAAGCAGCGAGCCAGCTACTGATCAGCAGCAGCTAGCTAGCTCAGCAAACACTGAATTTTGCGAGCTCCAGATCGAAGCAAGCAAGCAAGCTAACTCCCATGGCCAAGTTCGCTGCTCAGCTCAAGGACAGGTTTCTCGGCCTCGTCGAGCGCGTCGCCGGCTGCGGCCGCGGCGCCGGAGACAAGGGCGTCAAGGAACCCACCAAGCTGTCAACTGTGCAGCGCGTCGAGATTAGATCAAGAGATCCTAATGTGTCTGGAGGAGAAAAGCCACCGAACAACTAATCAACGCTGCACTGAAATGATATGATGCCGTTGCTTTGCCTTGGTGATTTTCTAATACGAAGTAGTAGTAATTAAATTTGATGTGTGCGAGTACTTTATTCCTCTTCGCGTTGTAATTAAATTTGATGATTTTTTTTGTCACTGGGTTCCTTTTGTAACTCCAGGAGTGCATATGAGTGTGTGCTGTTTTTCTGTAACGTCCGTGATTACATCAAAATTTGAGTAAAGTTGTTTTTCCCTACCGAGACGTGGAAGTATAAAATTTCTGTGACCACGAGCAT]

[+] EMBL AK121265             [AGCAGGCAAAGCAAGCAGCGAGCCAGCTACTGATCAGCAGCAGCTAGCTAGCTCAGCAAACACTGAATTTTGCGAGCTCCAGATCGAAGCAAGCAAGCAAGCTAACTCCCATGGCCAAGTTCGCTGCTCAGCTCAAGGACAGGTTTCTCGGCCTCGTCGAGCGCGTCGCCGGCTGCGGCCGCGGCGCCGGAGACAAGGGCGTCAAGGAACCCACCAAGCTGTCAACTGTGCAGCGCGTCGAGATTAGATCAAGAGATCCTAATGTGTCTGGAGGAGAAAAGCCACCGAACAACTAATCAACGCTGCACTGAAATGATATGATGCCGTTGCTTTGCCTTGGTGATTTTCTAATACGAAGTAGTAGTAATTAAATTTGATGTGTGCGAGTACTTTATTCCTCTTCGCGTTGTAATTAAATTTGATGATTTTTTTTGTCACTGGGTTCCTTTTGTAACTCCAGGAGTGCATATGAGTGTGTGCTGTTTTTCTGTAACGTCCGTGATTACATCAAAATTTGAGTAAAGTTGTTTTTCCCTACCGAGACGTGGAAGTATAAAATTTCTGTGACCACGAGCAT]




>consensus_1953#0
AGCAGGCAAAGCAAGCAGCGAGCCAGCTACTGATCAGCAGCAGCTAGCTAGCTCAGCAAA
CACTGAATTTTGCGAGCTCCAGATCGAAGCAAGCAAGCAAGCTAACTCCCATGGCCAAGT
TCGCTGCTCAGCTCAAGGACAGGTTTCTCGGCCTCGTCGAGCGCGTCGCCGGCTGCGGCC
GCGGCGCCGGAGACAAGGGCGTCAAGGAACCCACCAAGCTGTCAACTGTGCAGCGCGTCG
AGATTAGATCAAGAGATCCTAATGTGTCTGGAGGAGAAAAGCCACCGAACAACTAATCAA
CGCTGCACTGAAATGATATGATGCCGTTGCTTTGCCTTGGTGATTTTCTAATACGAAGTA
GTAGTAATTAAATTTGATGTGTGCGAGTACTTTATTCCTCTTCGCGTTGTAATTAAATTT
GATGATTTTTTTTGTCACTGGGTTCCTTTTGTAACTCCAGGAGTGCATATGAGTGTGTGC
TGTTTTTCTGTAACGTCCGTGATTACATCAAAATTTGAGTAAAGTTGTTTTTCCCTACCG
AGACGTGGAAGTATAAAATTTCTGTGACCACGAGCAT

consensusID : consensus_1953#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 330
fasta sequence

                              [AACTGTGCAGCGCGTCGAGATTAGATCAAGAGATCCTAATGTGTCTGGAGGAGAAAAGCCACCGAACAACTAATCAACGCTGCACTGAAATNATATGATGCCGTTGCTTTGCCTTGGTGATTTTCTAATACGAAGAGTAGTAATTAAATTTGATGTGTGCGAGTACTTTATTCCTCTTCGCGTTGTAATTAAATTTNATGATTTTTTTTGTCACTGGGTTCCTTTTGTAACTCCAGGAGTGCATATGAGTGTGTGCTGTTTTTCTGTAACGTCCGTNATTACATCAAAATTTGAGTAAAGTTGTTTTTCCCTACCGAAAAAAAAAAAAAA]

[+] EMBL AU058133             [AACTGTGCAGCGCGTCGAGATTAGATCAAGAGATCCTAATGTGTCTGGAGGAGAAAAGCCACCGAACAACTAATCAACGCTGCACTGAAATNATATGATGCCGTTGCTTTGCCTTGGTGATTTTCTAATACGAAGAGTAGTAATTAAATTTGATGTGTGCGAGTACTTTATTCCTCTTCGCGTTGTAATTAAATTTNATGATTTTTTTTGTCACTGGGTTCCTTTTGTAACTCCAGGAGTGCATATGAGTGTGTGCTGTTTTTCTGTAACGTCCGTNATTACATCAAAATTTGAGTAAAGTTGTTTTTCCCTACCGAAAAAAAAAAAAAA]




>consensus_1953#1
AACTGTGCAGCGCGTCGAGATTAGATCAAGAGATCCTAATGTGTCTGGAGGAGAAAAGCC
ACCGAACAACTAATCAACGCTGCACTGAAATNATATGATGCCGTTGCTTTGCCTTGGTGA
TTTTCTAATACGAAGAGTAGTAATTAAATTTGATGTGTGCGAGTACTTTATTCCTCTTCG
CGTTGTAATTAAATTTNATGATTTTTTTTGTCACTGGGTTCCTTTTGTAACTCCAGGAGT
GCATATGAGTGTGTGCTGTTTTTCTGTAACGTCCGTNATTACATCAAAATTTGAGTAAAG
TTGTTTTTCCCTACCGAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1953#0      AGCAGGCAAAGCAAGCAGCGAGCCAGCTACTGATCAGCAGCAGCTAGCTAGCTCAGCAAA 60
consensus_1953#1      ------------------------------------------------------------
                                                                                  

consensus_1953#0      CACTGAATTTTGCGAGCTCCAGATCGAAGCAAGCAAGCAAGCTAACTCCCATGGCCAAGT 120
consensus_1953#1      ------------------------------------------------------------
                                                                                  

consensus_1953#0      TCGCTGCTCAGCTCAAGGACAGGTTTCTCGGCCTCGTCGAGCGCGTCGCCGGCTGCGGCC 180
consensus_1953#1      ------------------------------------------------------------
                                                                                  

consensus_1953#0      GCGGCGCCGGAGACAAGGGCGTCAAGGAACCCACCAAGCTGTCAACTGTGCAGCGCGTCG 240
consensus_1953#1      -------------------------------------------AACTGTGCAGCGCGTCG 17
                                                                 *****************

consensus_1953#0      AGATTAGATCAAGAGATCCTAATGTGTCTGGAGGAGAAAAGCCACCGAACAACTAATCAA 300
consensus_1953#1      AGATTAGATCAAGAGATCCTAATGTGTCTGGAGGAGAAAAGCCACCGAACAACTAATCAA 77
                      ************************************************************

consensus_1953#0      CGCTGCACTGAAATGATATGATGCCGTTGCTTTGCCTTGGTGATTTTCTAATACGAAGTA 360
consensus_1953#1      CGCTGCACTGAAATNATATGATGCCGTTGCTTTGCCTTGGTGATTTTCTAATACGAAG-A 136
                      ************** ******************************************* *

consensus_1953#0      GTAGTAATTAAATTTGATGTGTGCGAGTACTTTATTCCTCTTCGCGTTGTAATTAAATTT 420
consensus_1953#1      GTAGTAATTAAATTTGATGTGTGCGAGTACTTTATTCCTCTTCGCGTTGTAATTAAATTT 196
                      ************************************************************

consensus_1953#0      GATGATTTTTTTTGTCACTGGGTTCCTTTTGTAACTCCAGGAGTGCATATGAGTGTGTGC 480
consensus_1953#1      NATGATTTTTTTTGTCACTGGGTTCCTTTTGTAACTCCAGGAGTGCATATGAGTGTGTGC 256
                       ***********************************************************

consensus_1953#0      TGTTTTTCTGTAACGTCCGTGATTACATCAAAATTTGAGTAAAGTTGTTTTTCCCTACCG 540
consensus_1953#1      TGTTTTTCTGTAACGTCCGTNATTACATCAAAATTTGAGTAAAGTTGTTTTTCCCTACCG 316
                      ******************** ***************************************

consensus_1953#0      AGACGTGGAAGTATAAAATTTCTGTGACCACGAGCAT 577
consensus_1953#1      AAA----AAAAAAAAAAA------------------- 330
                      * *     **  * ****