cluster # 2336

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Oryza sativa
cluster # 2336 cluster # 2336 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2336#0 length = 462 sequences # 1

consensus_2336#1 length = 403 sequences # 1

consensusID : consensus_2336#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 462
fasta sequence

                              [AATACCCTTGGCGGGGGTCCCAACTCCAACCCTCTTAAAAAAAAAAAGGTTTTTTTTCTTGGAAAATTTTCCCTGAAACCCAATTTAAAATCTTATCCCCCGGAAAAATCTCATTTCCCACCCCACTCTCTTATTACATCAAAAAGGGGGGAAAAAAACCACTGGAAAAGGGTACTTTTCTGAAAAAACCCAAGGCTGCCAAAAAACTACTCCCCCCAATGGGACTGCAGCAAAACACACCACTCCCCCCCTAATCATAACCAACTCCCCAAGAATCCCCTGCCCTTGCACAGGGGAACAATGGCCCCCTCCAAAAAAATCTCTGGATTCCGCTTCAAACCATTTTGGGCCCCCATAAATAATCATCAATTTGCCGGGTGGTCAGTTGCCCCCCCAACCTAAACCAAAAATCCCCCCCCATCTCTGGGAACATCAAAACATTCTCTGGGGGTGGAAAAAAAT]

[+] EMBL CB673317             [AATACCCTTGGCGGGGGTCCCAACTCCAACCCTCTTAAAAAAAAAAAGGTTTTTTTTCTTGGAAAATTTTCCCTGAAACCCAATTTAAAATCTTATCCCCCGGAAAAATCTCATTTCCCACCCCACTCTCTTATTACATCAAAAAGGGGGGAAAAAAACCACTGGAAAAGGGTACTTTTCTGAAAAAACCCAAGGCTGCCAAAAAACTACTCCCCCCAATGGGACTGCAGCAAAACACACCACTCCCCCCCTAATCATAACCAACTCCCCAAGAATCCCCTGCCCTTGCACAGGGGAACAATGGCCCCCTCCAAAAAAATCTCTGGATTCCGCTTCAAACCATTTTGGGCCCCCATAAATAATCATCAATTTGCCGGGTGGTCAGTTGCCCCCCCAACCTAAACCAAAAATCCCCCCCCATCTCTGGGAACATCAAAACATTCTCTGGGGGTGGAAAAAAAT]




>consensus_2336#0
AATACCCTTGGCGGGGGTCCCAACTCCAACCCTCTTAAAAAAAAAAAGGTTTTTTTTCTT
GGAAAATTTTCCCTGAAACCCAATTTAAAATCTTATCCCCCGGAAAAATCTCATTTCCCA
CCCCACTCTCTTATTACATCAAAAAGGGGGGAAAAAAACCACTGGAAAAGGGTACTTTTC
TGAAAAAACCCAAGGCTGCCAAAAAACTACTCCCCCCAATGGGACTGCAGCAAAACACAC
CACTCCCCCCCTAATCATAACCAACTCCCCAAGAATCCCCTGCCCTTGCACAGGGGAACA
ATGGCCCCCTCCAAAAAAATCTCTGGATTCCGCTTCAAACCATTTTGGGCCCCCATAAAT
AATCATCAATTTGCCGGGTGGTCAGTTGCCCCCCCAACCTAAACCAAAAATCCCCCCCCA
TCTCTGGGAACATCAAAACATTCTCTGGGGGTGGAAAAAAAT

consensusID : consensus_2336#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 403
fasta sequence

                              [TCCCCCGCAAAAATTTCTTTTCCCACCCAATTCTTCTTTTTACATCAAAAAGGGGGTAAAAAAACAACTGGAAAAGGTTTCTTTTCTGACAAATCCAAGGGCTGCCAAAATACTACTCCCCCCAAGGGCCCTGCCACAAAAAACCCCACCCCCCCCATAATTATAACCAACTCCCCAAAAATCCCCTGCCATTGCACAGGGGAACAATGGCCCCATCCAAAAAAATCTCTGTATTCACCTTCAAACCATTTTGGGCCCCCAAAAATAATCATCAATTTGCCGGCTGTTCCGTTGCCCCCCAAACCTAAGCCAAAATTCCCCCCCCATCTCTGGGAAAATCAAATCTTTCTCTGGGGGGGGAAAAAAACCCCCCCCCAACTGCTTGTCCCCCAAGTTTGGAATT]

[+] EMBL CB656932             [TCCCCCGCAAAAATTTCTTTTCCCACCCAATTCTTCTTTTTACATCAAAAAGGGGGTAAAAAAACAACTGGAAAAGGTTTCTTTTCTGACAAATCCAAGGGCTGCCAAAATACTACTCCCCCCAAGGGCCCTGCCACAAAAAACCCCACCCCCCCCATAATTATAACCAACTCCCCAAAAATCCCCTGCCATTGCACAGGGGAACAATGGCCCCATCCAAAAAAATCTCTGTATTCACCTTCAAACCATTTTGGGCCCCCAAAAATAATCATCAATTTGCCGGCTGTTCCGTTGCCCCCCAAACCTAAGCCAAAATTCCCCCCCCATCTCTGGGAAAATCAAATCTTTCTCTGGGGGGGGAAAAAAACCCCCCCCCAACTGCTTGTCCCCCAAGTTTGGAATT]




>consensus_2336#1
TCCCCCGCAAAAATTTCTTTTCCCACCCAATTCTTCTTTTTACATCAAAAAGGGGGTAAA
AAAACAACTGGAAAAGGTTTCTTTTCTGACAAATCCAAGGGCTGCCAAAATACTACTCCC
CCCAAGGGCCCTGCCACAAAAAACCCCACCCCCCCCATAATTATAACCAACTCCCCAAAA
ATCCCCTGCCATTGCACAGGGGAACAATGGCCCCATCCAAAAAAATCTCTGTATTCACCT
TCAAACCATTTTGGGCCCCCAAAAATAATCATCAATTTGCCGGCTGTTCCGTTGCCCCCC
AAACCTAAGCCAAAATTCCCCCCCCATCTCTGGGAAAATCAAATCTTTCTCTGGGGGGGG
AAAAAAACCCCCCCCCAACTGCTTGTCCCCCAAGTTTGGAATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2336#0      AATACCCTTGGCGGGGGTCCCAACTCCAACCCTCTTAAAAAAAAAAAGGTTTTTTTTCTT 60
consensus_2336#1      ------------------------------------------------------------
                                                                                  

consensus_2336#0      GGAAAATTTTCCCTGAAACCCAATTTAAAATCTTATCCCCCGGAAAAATCTCATTTCCCA 120
consensus_2336#1      -----------------------------------TCCCCCGCAAAAATTTCTTTTCCCA 25
                                                         ******* ****** ** *******

consensus_2336#0      CCCCACTCT-CTTATTACATCAAAAAGGGGGGAAAAAAACCACTGGAAAAGGGTACTTTT 179
consensus_2336#1      CCCAATTCTTCTTTTTACATCAAAAAGGGGGTAAAAAAACAACTGGAAAAGGTTTCTTTT 85
                      *** * *** *** ***************** ******** *********** * *****

consensus_2336#0      CTGAAAAAACCCAAGGCTGCCAAAAAACTACTCCCCCCAATGGGACTGCAGCAAAACACA 239
consensus_2336#1      CTGACAAATCCAAGGGCTGCCAAAATACTACTCCCCCCAAGGGCCCTGCCACAAAAAACC 145
                      **** *** ** * *********** ************** **  ****  ***** ** 

consensus_2336#0      CCACTCCCCCCCTAATCATAACCAACTCCCCAAGAATCCCCTGCCCTTGCACAGGGGAAC 299
consensus_2336#1      CCACCCCCCCCATAATTATAACCAACTCCCCAAAAATCCCCTGCCATTGCACAGGGGAAC 205
                      **** ****** **** **************** *********** **************

consensus_2336#0      AATGGCCCCCTCCAAAAAAATCTCTGGATTCCGCTTCAAACCATTTTGGGCCCCCATAAA 359
consensus_2336#1      AATGGCCCCATCCAAAAAAATCTCTGTATTCACCTTCAAACCATTTTGGGCCCCCAAAAA 265
                      ********* **************** ****  *********************** ***

consensus_2336#0      TAATCATCAATTTGCCGGGTGGTCAGTTGCCCCCCCAACCTAAACCAAAAATCCCCCCCC 419
consensus_2336#1      TAATCATCAATTTGCCGGCTGTTCCGTTGCCCCCCAAACCTAAGCCAAAATTCCCCCCCC 325
                      ****************** ** ** ********** ******* ****** *********

consensus_2336#0      ATCTCTGGGAACATCAAAACATTCTCTGGGGGTGGAAAAAAAT----------------- 462
consensus_2336#1      ATCTCTGGGAAAATCAAATCTTTCTCTGGGGGGGGAAAAAAACCCCCCCCCAACTGCTTG 385
                      *********** ****** * *********** *********                  

consensus_2336#0      ------------------
consensus_2336#1      TCCCCCAAGTTTGGAATT 403