These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2336#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 462 fasta sequence [AATACCCTTGGCGGGGGTCCCAACTCCAACCCTCTTAAAAAAAAAAAGGTTTTTTTTCTTGGAAAATTTTCCCTGAAACCCAATTTAAAATCTTATCCCCCGGAAAAATCTCATTTCCCACCCCACTCTCTTATTACATCAAAAAGGGGGGAAAAAAACCACTGGAAAAGGGTACTTTTCTGAAAAAACCCAAGGCTGCCAAAAAACTACTCCCCCCAATGGGACTGCAGCAAAACACACCACTCCCCCCCTAATCATAACCAACTCCCCAAGAATCCCCTGCCCTTGCACAGGGGAACAATGGCCCCCTCCAAAAAAATCTCTGGATTCCGCTTCAAACCATTTTGGGCCCCCATAAATAATCATCAATTTGCCGGGTGGTCAGTTGCCCCCCCAACCTAAACCAAAAATCCCCCCCCATCTCTGGGAACATCAAAACATTCTCTGGGGGTGGAAAAAAAT] [+] EMBL CB673317 [AATACCCTTGGCGGGGGTCCCAACTCCAACCCTCTTAAAAAAAAAAAGGTTTTTTTTCTTGGAAAATTTTCCCTGAAACCCAATTTAAAATCTTATCCCCCGGAAAAATCTCATTTCCCACCCCACTCTCTTATTACATCAAAAAGGGGGGAAAAAAACCACTGGAAAAGGGTACTTTTCTGAAAAAACCCAAGGCTGCCAAAAAACTACTCCCCCCAATGGGACTGCAGCAAAACACACCACTCCCCCCCTAATCATAACCAACTCCCCAAGAATCCCCTGCCCTTGCACAGGGGAACAATGGCCCCCTCCAAAAAAATCTCTGGATTCCGCTTCAAACCATTTTGGGCCCCCATAAATAATCATCAATTTGCCGGGTGGTCAGTTGCCCCCCCAACCTAAACCAAAAATCCCCCCCCATCTCTGGGAACATCAAAACATTCTCTGGGGGTGGAAAAAAAT] consensusID : consensus_2336#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 403 fasta sequence [TCCCCCGCAAAAATTTCTTTTCCCACCCAATTCTTCTTTTTACATCAAAAAGGGGGTAAAAAAACAACTGGAAAAGGTTTCTTTTCTGACAAATCCAAGGGCTGCCAAAATACTACTCCCCCCAAGGGCCCTGCCACAAAAAACCCCACCCCCCCCATAATTATAACCAACTCCCCAAAAATCCCCTGCCATTGCACAGGGGAACAATGGCCCCATCCAAAAAAATCTCTGTATTCACCTTCAAACCATTTTGGGCCCCCAAAAATAATCATCAATTTGCCGGCTGTTCCGTTGCCCCCCAAACCTAAGCCAAAATTCCCCCCCCATCTCTGGGAAAATCAAATCTTTCTCTGGGGGGGGAAAAAAACCCCCCCCCAACTGCTTGTCCCCCAAGTTTGGAATT] [+] EMBL CB656932 [TCCCCCGCAAAAATTTCTTTTCCCACCCAATTCTTCTTTTTACATCAAAAAGGGGGTAAAAAAACAACTGGAAAAGGTTTCTTTTCTGACAAATCCAAGGGCTGCCAAAATACTACTCCCCCCAAGGGCCCTGCCACAAAAAACCCCACCCCCCCCATAATTATAACCAACTCCCCAAAAATCCCCTGCCATTGCACAGGGGAACAATGGCCCCATCCAAAAAAATCTCTGTATTCACCTTCAAACCATTTTGGGCCCCCAAAAATAATCATCAATTTGCCGGCTGTTCCGTTGCCCCCCAAACCTAAGCCAAAATTCCCCCCCCATCTCTGGGAAAATCAAATCTTTCTCTGGGGGGGGAAAAAAACCCCCCCCCAACTGCTTGTCCCCCAAGTTTGGAATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2336#0 AATACCCTTGGCGGGGGTCCCAACTCCAACCCTCTTAAAAAAAAAAAGGTTTTTTTTCTT 60 consensus_2336#1 ------------------------------------------------------------ consensus_2336#0 GGAAAATTTTCCCTGAAACCCAATTTAAAATCTTATCCCCCGGAAAAATCTCATTTCCCA 120 consensus_2336#1 -----------------------------------TCCCCCGCAAAAATTTCTTTTCCCA 25 ******* ****** ** ******* consensus_2336#0 CCCCACTCT-CTTATTACATCAAAAAGGGGGGAAAAAAACCACTGGAAAAGGGTACTTTT 179 consensus_2336#1 CCCAATTCTTCTTTTTACATCAAAAAGGGGGTAAAAAAACAACTGGAAAAGGTTTCTTTT 85 *** * *** *** ***************** ******** *********** * ***** consensus_2336#0 CTGAAAAAACCCAAGGCTGCCAAAAAACTACTCCCCCCAATGGGACTGCAGCAAAACACA 239 consensus_2336#1 CTGACAAATCCAAGGGCTGCCAAAATACTACTCCCCCCAAGGGCCCTGCCACAAAAAACC 145 **** *** ** * *********** ************** ** **** ***** ** consensus_2336#0 CCACTCCCCCCCTAATCATAACCAACTCCCCAAGAATCCCCTGCCCTTGCACAGGGGAAC 299 consensus_2336#1 CCACCCCCCCCATAATTATAACCAACTCCCCAAAAATCCCCTGCCATTGCACAGGGGAAC 205 **** ****** **** **************** *********** ************** consensus_2336#0 AATGGCCCCCTCCAAAAAAATCTCTGGATTCCGCTTCAAACCATTTTGGGCCCCCATAAA 359 consensus_2336#1 AATGGCCCCATCCAAAAAAATCTCTGTATTCACCTTCAAACCATTTTGGGCCCCCAAAAA 265 ********* **************** **** *********************** *** consensus_2336#0 TAATCATCAATTTGCCGGGTGGTCAGTTGCCCCCCCAACCTAAACCAAAAATCCCCCCCC 419 consensus_2336#1 TAATCATCAATTTGCCGGCTGTTCCGTTGCCCCCCAAACCTAAGCCAAAATTCCCCCCCC 325 ****************** ** ** ********** ******* ****** ********* consensus_2336#0 ATCTCTGGGAACATCAAAACATTCTCTGGGGGTGGAAAAAAAT----------------- 462 consensus_2336#1 ATCTCTGGGAAAATCAAATCTTTCTCTGGGGGGGGAAAAAAACCCCCCCCCAACTGCTTG 385 *********** ****** * *********** ********* consensus_2336#0 ------------------ consensus_2336#1 TCCCCCAAGTTTGGAATT 403 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||