These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2483#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1216 fasta sequence [CTTTCAACCCCATCCACCTCCGGACTCCGGTTGCGTTGCGCCATGGCGCTGCAGCTTCAGGCCGCCACTCCGCATCCCCCTCTTCCTCTCCGCTCCTCACGCCGCCGCTTCGCTGCTCCGCCGTCGCCTCTCGTTCTCCGCGCCGTAGCTTCCTCCCGCGATGGCCCCTCCACGCGCCTCTCCTCTCCTGCGCCCGCGCCGCCTCGCCGCCGGCGGCGTGCGAGCGTGAGGGCCCGCGCCGGCGCGGGCAGAGGCGGCCGGGGGGAGTCCCCGTACGACGTGCTCGGCGTGCCTCCGTCGGCGCCGCCCGAAGAGATCAAGCGCGCGTACCGGCGGCTTGCTCTCAAGTTCCACCCGGACGTCAACAAGGAGCCCAACGCGCAAGAGAAATTTCTGCGGATCAAGCATGCGTACAACACGCTCATGAATTCAGAGAGCCGGTCCAAGTACGCGAGCACTAGCAGCAACACATATTATTCGTCCAGGACATACGGGAAGAGCAGCACTACTTCAGCTGATGAAGAAGAGCCATTCTATGGCTTTGGTACTGGAATACCTTCTCTTCTGCATTAGTGAGCTATATTATGGTTTCTGTGGTTAGGAATTTCGTGCTAGTGATGAGTAAAATGAAGTTTCAAGAGAGATCCTTTCTGCTAAGAAACAACTGGTAGATTAGATCACATCATAATCCTTGTATTTTGAAACTTCAGTAGATAAATGGAACTCTAGGGTGTGTAGTTACTAGATAGTTGAACTAAAAATGTTCCATTATTTGACATTATACTGTGGTCATGGATCTGCAGGGGATTTCCTTAGAGATCTTCAAGCAGAATTTCAGAACTGGGAAGCCGGTCTGAATTCAGAACAGAAACCTAAAAGCTTGTGGGAAGAGTTGGCAGCCATTGGTGAAGAATTTGTTGAGTTTCTGGAGAACGAACTCAAGATCGATGACTCAAGTGATGCGGAAGACAATGCAAATGATCCGTACACACAGTCTGGAGGCAAAAACAAGCAAGATGTTAATACATCGACAAGTAGCTTTGATGATAGCGTATCTGAGATAGAGGCTGCTTTGGAGAAGCTGAAGAAGGAACTTGGGCTCAGCTGAGCCATTTGATACCGATAGCATAGCATATCATACTGCTGCAACTATAGGTCTATAGCCATCTGCAACTGACTTGGTGTTCTTACGAAGTTATTTCTTATACTCAAATGT] [+] EMBL AK099592 [CTTTCAACCCCATCCACCTCCGGACTCCGGTTGCGTTGCGCCATGGCGCTGCAGCTTCAGGCCGCCACTCCGCATCCCCCTCTTCCTCTCCGCTCCTCACGCCGCCGCTTCGCTGCTCCGCCGTCGCCTCTCGTTCTCCGCGCCGTAGCTTCCTCCCGCGATGGCCCCTCCACGCGCCTCTCCTCTCCTGCGCCCGCGCCGCCTCGCCGCCGGCGGCGTGCGAGCGTGAGGGCCCGCGCCGGCGCGGGCAGAGGCGGCCGGGGGGAGTCCCCGTACGACGTGCTCGGCGTGCCTCCGTCGGCGCCGCCCGAAGAGATCAAGCGCGCGTACCGGCGGCTTGCTCTCAAGTTCCACCCGGACGTCAACAAGGAGCCCAACGCGCAAGAGAAATTTCTGCGGATCAAGCATGCGTACAACACGCTCATGAATTCAGAGAGCCGGTCCAAGTACGCGAGCACTAGCAGCAACACATATTATTCGTCCAGGACATACGGGAAGAGCAGCACTACTTCAGCTGATGAAGAAGAGCCATTCTATGGCTTTGGTACTGGAATACCTTCTCTTCTGCATTAGTGAGCTATATTATGGTTTCTGTGGTTAGGAATTTCGTGCTAGTGATGAGTAAAATGAAGTTTCAAGAGAGATCCTTTCTGCTAAGAAACAACTGGTAGATTAGATCACATCATAATCCTTGTATTTTGAAACTTCAGTAGATAAATGGAACTCTAGGGTGTGTAGTTACTAGATAGTTGAACTAAAAATGTTCCATTATTTGACATTATACTGTGGTCATGGATCTGCAGGGGATTTCCTTAGAGATCTTCAAGCAGAATTTCAGAACTGGGAAGCCGGTCTGAATTCAGAACAGAAACCTAAAAGCTTGTGGGAAGAGTTGGCAGCCATTGGTGAAGAATTTGTTGAGTTTCTGGAGAACGAACTCAAGATCGATGACTCAAGTGATGCGGAAGACAATGCAAATGATCCGTACACACAGTCTGGAGGCAAAAACAAGCAAGATGTTAATACATCGACAAGTAGCTTTGATGATAGCGTATCTGAGATAGAGGCTGCTTTGGAGAAGCTGAAGAAGGAACTTGGGCTCAGCTGAGCCATTTGATACCGATAGCATAGCATATCATACTGCTGCAACTATAGGTCTATAGCCATCTGCAACTGACTTGGTGTTCTTACGAAGTTATTTCTTATACTCAAATGT] consensusID : consensus_2483#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 985 fasta sequence [ACAGCCGCCCCCAAACCTTGTCACCTCCTTGCGTTTCCTGATTATTTGTGTTTGATGTTGTGTCAACGTAGCCCAACGCGCAAGAGAAATTTCTGCGGATCAAGCATGCGTACAACACGCTCATGAATTCAGAGAGCCGGTCCAAGTACGCGAGCACTAGCAGCAACACATATTATTCGTCCAGGACATACGGGAAGAGCAGCACTACTTCAGCTGATGAAGAAGAGCCATTCTATGGCTTTGGGGATTTCCTTAGAGATCTTCAAGCAGAATTTCAGAACTGGGAAGCCGGTCTGAATTCAGAACAGAAACCTAAAAGCTTGTGGGAAGAGTTGGCAGCCATTGGTGAAGAATTTGTTGAGTTTCTGGAGAACGAACTCAAGATCGATGACTCAAGTGATGCGGAAGACAATGCAAATGATCCGTACACACAGTCTGGAGGCAAAAACAAGCAAGATGTTAATACATCGACAAGTAGCTTTGATGATAGCGTATCTGAGATAGAGGCTGCTTTGGAGAAGCTGAAGAAGGAACTTGGGCTCAGCTGAGCCATTTGATACCGATAGCATAGCATATCATACTGCTGCAACTATAGGTCTATAGCCATCTGCAACTGGCTTGGTGTTCTTACGAAGTTATTTCTTATACTCAAATGTTCTTGGATGCATGATACCTATAGCCATCGCAACCTGCTTGGTTGTCTGTGTGCAGGTATTTGATGTACCCATTCTTGTCTTCAGAAGGTGATGGTAGCTCAGATATTGTTAGTTTAGGTGATACAGCTCACAAGTTCAGGGCATCCAGCCTCTTTATAAGATGTTTGTGGTGTCTTGGGTGTGTTCTGCACTTGTGAAATTTTTGGGAGTAAAAGATGATATCCTGTTACACAGTGTATGTTGTCATTTCGTGCGGCCAAAATGGGTTTAATTTTGACATTTCGATGATGAATCTTACATGAATGAATTAATATGCAGTGCTTGTGTAA] [+] EMBL AK069263 [ACAGCCGCCCCCAAACCTTGTCACCTCCTTGCGTTTCCTGATTATTTGTGTTTGATGTTGTGTCAACGTAGCCCAACGCGCAAGAGAAATTTCTGCGGATCAAGCATGCGTACAACACGCTCATGAATTCAGAGAGCCGGTCCAAGTACGCGAGCACTAGCAGCAACACATATTATTCGTCCAGGACATACGGGAAGAGCAGCACTACTTCAGCTGATGAAGAAGAGCCATTCTATGGCTTTGGGGATTTCCTTAGAGATCTTCAAGCAGAATTTCAGAACTGGGAAGCCGGTCTGAATTCAGAACAGAAACCTAAAAGCTTGTGGGAAGAGTTGGCAGCCATTGGTGAAGAATTTGTTGAGTTTCTGGAGAACGAACTCAAGATCGATGACTCAAGTGATGCGGAAGACAATGCAAATGATCCGTACACACAGTCTGGAGGCAAAAACAAGCAAGATGTTAATACATCGACAAGTAGCTTTGATGATAGCGTATCTGAGATAGAGGCTGCTTTGGAGAAGCTGAAGAAGGAACTTGGGCTCAGCTGAGCCATTTGATACCGATAGCATAGCATATCATACTGCTGCAACTATAGGTCTATAGCCATCTGCAACTGGCTTGGTGTTCTTACGAAGTTATTTCTTATACTCAAATGTTCTTGGATGCATGATACCTATAGCCATCGCAACCTGCTTGGTTGTCTGTGTGCAGGTATTTGATGTACCCATTCTTGTCTTCAGAAGGTGATGGTAGCTCAGATATTGTTAGTTTAGGTGATACAGCTCACAAGTTCAGGGCATCCAGCCTCTTTATAAGATGTTTGTGGTGTCTTGGGTGTGTTCTGCACTTGTGAAATTTTTGGGAGTAAAAGATGATATCCTGTTACACAGTGTATGTTGTCATTTCGTGCGGCCAAAATGGGTTTAATTTTGACATTTCGATGATGAATCTTACATGAATGAATTAATATGCAGTGCTTGTGTAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2483#0 CTTTCAACCCCATCCACCTCCGGACTCCGGTTGCGTTGCGCCATGGCGCTGCAGCTTCAG 60 consensus_2483#1 ------------------------------------------------------------ consensus_2483#0 GCCGCCACTCCGCATCCCCCTCTTCCTCTCCGCTCCTCACGCCGCCGCTTCGCTGCTCCG 120 consensus_2483#1 ------------------------------------------------------------ consensus_2483#0 CCGTCGCCTCTCGTTCTCCGCGCCGTAGCTTCCTCCCGCGATGGCCCCTCCACGCGCCTC 180 consensus_2483#1 ------------------------------------------------------------ consensus_2483#0 TCCTCTCCTGCGCCCGCGCCGCCTCGCCGCCGGCGGCGTGCGAGCGTGAGGGCCCGCGCC 240 consensus_2483#1 ------------------------------------------------------------ consensus_2483#0 GGCGCGGGCAGAGGCGGCCGGGGGGAGTCCCCGTACGACGTGCTCGGCGTGCCTCCGTCG 300 consensus_2483#1 --------------------------------------------------------ACAG 4 * consensus_2483#0 GCGCCGCCCGAAGAGATCAAGCGCGCGTACCGGCGGCTTGCTCTCAAGTTCCACCCGGAC 360 consensus_2483#1 CCGCCCCCAAACCTTGTCACCTCCTTGCGTTTCCTGATTATT--TGTGTTTGATGTTG-T 61 **** ** * *** * * * * ** * *** * * consensus_2483#0 GTCAACAAGGAGCCCAACGCGCAAGAGAAATTTCTGCGGATCAAGCATGCGTACAACACG 420 consensus_2483#1 GTCAAC--GTAGCCCAACGCGCAAGAGAAATTTCTGCGGATCAAGCATGCGTACAACACG 119 ****** * ************************************************** consensus_2483#0 CTCATGAATTCAGAGAGCCGGTCCAAGTACGCGAGCACTAGCAGCAACACATATTATTCG 480 consensus_2483#1 CTCATGAATTCAGAGAGCCGGTCCAAGTACGCGAGCACTAGCAGCAACACATATTATTCG 179 ************************************************************ consensus_2483#0 TCCAGGACATACGGGAAGAGCAGCACTACTTCAGCTGATGAAGAAGAGCCATTCTATGGC 540 consensus_2483#1 TCCAGGACATACGGGAAGAGCAGCACTACTTCAGCTGATGAAGAAGAGCCATTCTATGGC 239 ************************************************************ consensus_2483#0 TTTGGTACTGGAATACCTTCTCTTCTGCATTAGTGAGCTATATTATGGTTTCTGTGGTTA 600 consensus_2483#1 TTTGG----GGA-----TTTCCTTAGAGATCTTCAAGCAGAATTTCAGAA-CTGGGAAGC 289 ***** *** ** *** ** *** *** * *** * consensus_2483#0 GGAATTTCGTGCTAGTGATGAGTAAAATGAAGTTTCAAGAGAGATCCTTTCTGCTAAGAA 660 consensus_2483#1 CGGTCTGAATTCAGAACAGAAACCTAAAAGCTTGTGGGAAGAGTTGGCAGCCATTGGTGA 349 * * * * * * ** * * **** * * * * consensus_2483#0 ACAACTGGTAGATT------AGATCACA-TCATAATCCTTGTATTTTGAAACTTCAGTAG 713 consensus_2483#1 AGAATTTGTTGAGTTTCTGGAGAACGAACTCAAGATCGATG-ACTCAAGTGATGCGGAAG 408 * ** * ** ** * *** * * *** *** ** * * * * * ** consensus_2483#0 ATAAATGGAACTCTAGGGTGTGTAGTTACTAGATAGTTGAACTAAAAATGTTCCATTAT- 772 consensus_2483#1 ACAA-TGCAAATGATCCGTACACACAGTCTGGAGGCAAAAACAAGCAAGATGTTAATACA 467 * ** ** ** * ** * ** ** *** * ** * * ** consensus_2483#0 TTGACATTATACTGTGGTCATGG---ATCTGCAG--GGGATTTCCTTAGAGATCTTCAAG 827 consensus_2483#1 TCGACAAGTAGCTTTGATGATAGCGTATCTGAGATAGAGGCTGCTTTGGAGAAGCTGAAG 527 * **** ** ** * ** * ***** * * * * ** **** * *** consensus_2483#0 CAGAATTTCAGAACTGGGAAGCCGGTCTGAATTCAGAACAGAAACCTAAAAGCTTGTGGG 887 consensus_2483#1 AAGGAACTTGGGCTCAGCTGAGCCATTTGATACCGATAGCATAGCATATCATACTGCTGC 587 ** * * * * * * *** * * * * ** * ** * consensus_2483#0 AA----GAGTTGGCAGCCATTGGTGAAGAATTTGTTGAGTTTCTGGAGAACGAACTCAAG 943 consensus_2483#1 AACTATAGGTCTATAGCCATCTGCAACTGGCTTGGTGTTCTT-------ACGAAGTTATT 640 ** ** ****** * * *** ** ** ***** * * consensus_2483#0 ATCGATGACTCAAGTGATGCGGAAGACA--ATGCAAATGATCCGTACACACAGTCTGGAG 1001 consensus_2483#1 TCTTAT-ACTCAAATGTTCTTGGATGCATGATACCTATAGCCATCGCAACCTGCTTGGTT 699 ** ****** ** * * * ** ** * ** * ** * * *** consensus_2483#0 GCAAAAACAAGCAAGATGTTAATACATCGACAAGTAGCTTT-GATGATAGCG-TATCTGA 1059 consensus_2483#1 GTCT--GTGTGCAGGTATTTGATGTACCCATTCTTGTCTTCAGAAGGTGATGGTAGCTCA 757 * *** * ** ** * * * * *** ** * * * ** ** * consensus_2483#0 GATAGAGGCTGCTTTGGAGAAGCTGAAGAAGGAACTTGGGC--TCAGCTGAGCCATTTGA 1117 consensus_2483#1 GATATTGTTAGTTTAGGTGATACAGCTCACAAGTTCAGGGCATCCAGCCTCTTTATAAGA 817 **** * * ** ** ** * * * **** **** ** ** consensus_2483#0 TACCGATAGCATAGCATATCATACTGCTGCAACTATAGGTCTATAGCCATCTGCAACTGA 1177 consensus_2483#1 TGTTTGTGGTGTCTTGGGT-GTGTT-CTGCACTTGTGAAATTTTTGGGAGTAAAAGATGA 875 * * * * * * * ***** * * * * * * * *** consensus_2483#0 CTTGGTGTTCT------TACGAAGTTATTTCTTATACTCAAA-TGT-------------- 1216 consensus_2483#1 TATCCTGTTACACAGTGTATGTTGTCATTTCGTGCGGCCAAAATGGGTTTAATTTTGACA 935 * **** ** * ** ***** * **** ** consensus_2483#0 -------------------------------------------------- consensus_2483#1 TTTCGATGATGAATCTTACATGAATGAATTAATATGCAGTGCTTGTGTAA 985 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||