These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2651#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 676 fasta sequence [TTTTTTTTGTGTGTTATTTGCTTGAGGGTAACATGATGGAATTAATGATCATTTTGCTGCTGGTGTAATTGGCGACCTGAACCACCTGATATCGGCCACAATCAGCGTTGTTACGCGCTGCCAGCGAGTTCCGGTTCAAATGAACTCTGGACCTGTAGAAGCTGACGGTGAACCTGATCCCGTTACCGCGGTTGCACTTCTTCATGGTGCTTTTCGTGCCACTTACATCGGGCGACCTACAGGCTAACAGGTCGGTGAGGGCACCGGAGCTGGAACCTGGAAAGCTGGATACCAAGAACATGATGAGCGCCGCCGTTCTTTGTTCTTTTAGATACCTCTGGGTGACCGCCAAGGTCCTGCTGCAGATGAGCCCCATGGAGGTGGCCCAGCTGCTTAACCTTGAGAGCATCTCAAAGCCCTCCTTGTCATCCTAGGGGATGGGCCTGCTCTTTCATTTTATTGCACCAGATAAAATTTGACACCTCCTTCGCTAGTCCTCCAATGCTGGTTGGGTTACGGCACCTGACCTTACACAGGCTGGCTAACATGCTAATACTTAACACGGATGTTTTCGCCCTCGGACCTAGGCCATCTGGTACCACAACCACGGACTGTCGAGGCCTTTCTCTGCGAAGATTTCTTCTTCAACAGCAACCTCGAATCCTTACATTGCATT] [+] EMBL CA763272 [TTTTTTTTGTGTGTTATTTGCTTGAGGGTAACATGATGGAATTAATGATCATTTTGCTGCTGGTGTAATTGGCGACCTGAACCACCTGATATCGGCCACAATCAGCGTTGTTACGCGCTGCCAGCGAGTTCCGGTTCAAATGAACTCTGGACCTGTAGAAGCTGACGGTGAACCTGATCCCGTTACCGCGGTTGCACTTCTTCATGGTGCTTTTCGTGCCACTTACATCGGGCGACCTACAGGCTAACAGGTCGGTGAGGGCACCGGAGCTGGAACCTGGAAAGCTGGATACCAAGAACATGATGAGCGCCGCCGTTCTTTGTTCTTTTAGATACCTCTGGGTGACCGCCAAGGTCCTGCTGCAGATGAGCCCCATGGAGGTGGCCCAGCTGCTTAACCTTGAGAGCATCTCAAAGCCCTCCTTGTCATCCTAGGGGATGGGCCTGCTCTTTCATTTTATTGCACCAGATAAAATTTGACACCTCCTTCGCTAGTCCTCCAATGCTGGTTGGGTTACGGCACCTGACCTTACACAGGCTGGCTAACATGCTAATACTTAACACGGATGTTTTCGCCCTCGGACCTAGGCCATCTGGTACCACAACCACGGACTGTCGAGGCCTTTCTCTGCGAAGATTTCTTCTTCAACAGCAACCTCGAATCCTTACATTGCATT] consensusID : consensus_2651#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 659 fasta sequence [TTTTTTTTGTGTGTAATTTGCTTGAAATTAACATGATGGAATTAATGATCAATTTGCTGTTGTTGTAGTTGGCGACCTGAACCACCTGATATCGGCAACGATCAGCGGGGTGACGCGCTGCCTGCAGTTCCCGGTGCAACTGAACTCGGACCTGAAGAATCTGGAGGTGAACCTGATCCCGTTACCGCGGCTGCACTTCTTCATGGTGCTGTTCGCGCCGCTTACGTCGGGCGGATTACTGGAGCACATGCCTTGTGACGGCGCCGGAGCTCACGCCCTGGAAGTGGGACGCCGAGAACAAGATGAGCGCCCCCGTTCCGGGCCTCTTGCGATACCTCGCGGAGACCGCCATGGTCCTGTTTAAGATGAGCACCAGGGAGGTGGACCATCCGCTGACCGTTGAGAGCAACTTTAAGTCGTCCTAGTTCTCCTCAGGGGATCCACCTCCTCGTTAATTCTTCTTCCGCGAGATAATTCACTACCTTCTCGACAAGTCCTTCAATGTTGGTAGGGCTCCGCAACCATACTTTTTCAGAGCTTCTTGCAACCAAGTACTTGAACGCGTTGTTCTGACGCTCGGACTACGTCACTGGTGCTCCAACCACGGAGTGTTCGAGATGCACTCTGCGAAGTCCATTGTTCATGAACGACCTCGACTC] [+] EMBL CA763271 [TTTTTTTTGTGTGTAATTTGCTTGAAATTAACATGATGGAATTAATGATCAATTTGCTGTTGTTGTAGTTGGCGACCTGAACCACCTGATATCGGCAACGATCAGCGGGGTGACGCGCTGCCTGCAGTTCCCGGTGCAACTGAACTCGGACCTGAAGAATCTGGAGGTGAACCTGATCCCGTTACCGCGGCTGCACTTCTTCATGGTGCTGTTCGCGCCGCTTACGTCGGGCGGATTACTGGAGCACATGCCTTGTGACGGCGCCGGAGCTCACGCCCTGGAAGTGGGACGCCGAGAACAAGATGAGCGCCCCCGTTCCGGGCCTCTTGCGATACCTCGCGGAGACCGCCATGGTCCTGTTTAAGATGAGCACCAGGGAGGTGGACCATCCGCTGACCGTTGAGAGCAACTTTAAGTCGTCCTAGTTCTCCTCAGGGGATCCACCTCCTCGTTAATTCTTCTTCCGCGAGATAATTCACTACCTTCTCGACAAGTCCTTCAATGTTGGTAGGGCTCCGCAACCATACTTTTTCAGAGCTTCTTGCAACCAAGTACTTGAACGCGTTGTTCTGACGCTCGGACTACGTCACTGGTGCTCCAACCACGGAGTGTTCGAGATGCACTCTGCGAAGTCCATTGTTCATGAACGACCTCGACTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2651#0 TTTTTTTTGTGTGTTATTTGCTTGAGGGTAACATGATGGAATTAATGATCATTTTGCTGC 60 consensus_2651#1 TTTTTTTTGTGTGTAATTTGCTTGAAATTAACATGATGGAATTAATGATCAATTTGCTGT 60 ************** ********** *********************** ******* consensus_2651#0 TGGTGTAATTGGCGACCTGAACCACCTGATATCGGCCACAATCAGCGTTGTTACGCGCTG 120 consensus_2651#1 TGTTGTAGTTGGCGACCTGAACCACCTGATATCGGCAACGATCAGCGGGGTGACGCGCTG 120 ** **** **************************** ** ******* ** ******** consensus_2651#0 CCAGCGAGTTCCGGTTCAAATGAACTCTGGACCTGTAGAAGCTGACGGTGAACCTGATCC 180 consensus_2651#1 CCTGCAGTTCCCGGTGCAACTGAACTC-GGACCTGAAGAATCTGGAGGTGAACCTGATCC 179 ** ** * ***** *** ******* ******* **** *** ************** consensus_2651#0 CGTTACCGCGGTTGCACTTCTTCATGGTGCTTTTCGTGCCACTTACATCGGGCGACCTAC 240 consensus_2651#1 CGTTACCGCGGCTGCACTTCTTCATGGTGCTGTTCGCGCCGCTTACGTCGGGCGGATTAC 239 *********** ******************* **** *** ***** ******* *** consensus_2651#0 AGGCTAACAGGTCG-GTGAGGGCACCGGAGCTGGAACCTGGAAAGCTGGATACCAAGAAC 299 consensus_2651#1 TGGAGCACATGCCTTGTGACGGCGCCGGAGCTCACGCCCTGGAAGTGGGACGCCGAGAAC 299 ** *** * * **** *** ******** ** * *** *** ** ***** consensus_2651#0 ATGATGAGCGCCGCCGTTCTTTGTTCTTTTAGATACCTCTGGGTGACCGCCAAGGTCCTG 359 consensus_2651#1 AAGATGAGCGCCCCCGTTCCGGGCCTCTTGCGATACCTCGCGGAGACCGCCATGGTCCTG 359 * ********** ****** * ** ******** ** ******** ******* consensus_2651#0 CTGCAGATGAGCCCCATGGAGGTGGCCCAGCTGCTTAACCTTGAGAGCATCTCAAAGCCC 419 consensus_2651#1 TTTAAGATGAGCACCAGGGAGGTGGACCATCCGCTGACCGTTGAGAGCAACTTTAAGTCG 419 * ******** *** ******** *** * *** * * ********* ** *** * consensus_2651#0 TCCTTGTCATCCT-AGGGGATGGGCCTGCTCTTTCATT-TTATTGCACCAGATAAAATTT 477 consensus_2651#1 TCCTAGTTCTCCTCAGGGGATCCACCTCCTCGTTAATTCTTCTTCCGCGAGATAA--TTC 477 **** ** **** ******* *** *** ** *** ** ** * * ****** ** consensus_2651#0 GACACCTCCTTCGCTAGTCCTCCAATGCTGGTTGGGTTACGGCACCTGACCTTACACAGG 537 consensus_2651#1 ACTACCTTCTCGACAAGTCCTTCAATGTTGGTAGGGCTCCGCAACCATACTTT-TTCAGA 536 **** ** * ****** ***** **** *** * ** *** ** ** *** consensus_2651#0 CTGGCTAACATGCTAATACTTAACACGGATGTTTTCGCCCTCGGACCTAGGCCATCTGGT 597 consensus_2651#1 GCTTCTTGCAACCAAGTACTTGAACGCGTTGTTCTGACGCTCGGAC-TACGTCA-CTGGT 594 ** ** * * ***** * * **** * * ******* ** * ** ***** consensus_2651#0 ACCACAACCACGGACTGTCGAGGCCTTTCTCTGCGAAGATTTCTTCTTCAACAGCAACCT 657 consensus_2651#1 GCTCCAACCACGGAGTGTTCGAGATGCACTCTGCGAAG-TCCATTGTTCATGAACGACCT 653 * ********** *** * ********** * ** **** * * **** consensus_2651#0 CGAATCCTTACATTGCATT 676 consensus_2651#1 CGACTC------------- 659 *** ** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||