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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2658#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2136 fasta sequence
[GCGACACGCACCACCGTCTCCGCCTCCGCGCCGCCGCCGTCGTCTCCGCCGCCTCCGGTGGAATCCTCGCCGCGGCCCCGTCACACCTCATCCTCTTCGCTTGGCCTTCTCCGCATCCGGTTATTTTAGGTCGGAGAAGGCGGCGGATCCGCCGCTCGCCGGGCGGATCACGCTCCCTCATCATTGGTATCAGGGGCGGAGACGCGAGCGGTGAGCCTCCCCGCCGTTGGGAGAGATCTTCACTTGCCAAACTCAATTCTCAGCATGTCGTGGAGGCGGCTGGAGCTCGCCGCGCTCTGCGCCTACGCGCTGGGGTTCTACCTCGTCGTGATCCGGAAGTCGCTTCGCCTCTCTCATGATTACTCTGGGAGGTTGTACGGCCTACGAGCAGGCTCACTCGCTGGCCATCTGAACGACTTGTCCGATGCACAATGGAGAAATTTCCGGGGGAACTTACCTGTTCTTACCATTGTGATGGGTGCATTTCTGATGTTGGCGAATATGCTTCGCTACTGCTACAGCTTGAAGGGAAGAGGGGCCTCTTTGGTGTGGCTTCTCCTGTCTGTCACCTATTTATGCTATCTACATGGTGCTTGTGTTAGTTTCATTCTCCTAATAGCATTGATTAACTACTCCATAGTGAAGCTATTTTCTCGATATAAATATTGTGTTGGGCTCATTTGGAGCTTCAACTTAGCTGTCCTTATACTTAACCGAGTCTATGAAGGCTATTCATTCTCATTGTTTGGGCAACAGCTTGCTTTTCTAGACAATCATCGGGGTACATTTCGGTGGCACATTTGCTTCAATTTTGTTGTATTACGAATGATAAGCTTTGGATGCGATTACTGCTGGTCACTCCGGTCTTCTCAGTTTGATCATAAGAAGCATATGCAGCGATGCCAAGTTTGTTATTCTGGCAAAACATGCTACTTTGCTTTGCAGGAGAGAGCGCTCATTGGTGACAAATACACATTACTAACATATTTATGCTACTTGACATATGCTCCACTCTACATCGCTGGACCTATTGTAAGCTACAATGCATTTGCAGCCCAGTTAGATGCACCCCAGAAAAATTATTCAGTTGCACAAATATCTTGGTATGGGGTGAGGTGGATCCTAAGTTTCCTTCTTATGGAAGCTATGACACATTTTTTCCACTACAACGCCTTTGTAGTTAGCCGATTATGGCAGCAATTATCGCCATTTGAGATCTTCATCATTAGTTATGGGGTGCTGAACTTTATGTGGTTGAAATTCTTCCTGATTTGGCGCTACTTCAGGTTTTGGTCACTGGTAGGAGGAGTTGAGACGCCTGAAAATATGCCAAGGTGTATAAATAATTGTCATGATCTGGAGAGTTTCTGGAAAAGCTGGCATGCTTCTTTTAACAGATGGTTGGTCAGGTATCTGACATTCCTCTTGGGGGTGCTCAAAGAAAACTACTTAGTATCTGGGTGGTATTCACGTTTGTAGCAGTTTGGCATGACCTGGAATGGAAACTTATTTCATGGGCATGGTTAACATGCTTATTTTTCGTCCCTGAAATATTGGTCAAGTCTCTATCCAACAAGTTCCAGCCAAGAAGTGCCCTTGGGTTGTTCATTCACCGGGAGTTAAGTGCAATTGCTGGTGCTGTGACAATAAGCTGCCTTATGGTGGCAAACCTTGTCGGTTATGTTGTAGGACCCTCCGGCATTAAACTTCTCATGTCACGAATGCTTGGGAAGGATGCCCTTCCTGTCCTTGCCTTCATATTTATCTCATTCTATGTGGGAGTTAAGCTTATGTTTCATATACGTGACGCACATGAGAATCAAGGGTGATAACTGATAAGTCGACGGGGAAGAACTCCCACTGTAAAATGTAGACAAGCAGCTGCGATGAGACGCTGTCAAGACTCAAGACAAATAGGCTTACCTCTTCTTTTATGGGATTTGTTTGACACGAACGAAAAGCTCCTCTGACCGCCGAGCTTTGGCTCTTCTGTAATGTAGGGCTTATTGATTGGGGTAGTGAAGATAATAGAGCACAAATGGAAATGGTACTACGAGCTCTGTTTTTAAGAGTGGAAATGCAGGGCACACTCCATTGGATTGAAGGAATTTCAATTCTCAGACAATTTTCCTATGA]
[+] EMBL AK067112 [GCGACACGCACCACCGTCTCCGCCTCCGCGCCGCCGCCGTCGTCTCCGCCGCCTCCGGTGGAATCCTCGCCGCGGCCCCGTCACACCTCATCCTCTTCGCTTGGCCTTCTCCGCATCCGGTTATTTTAGGTCGGAGAAGGCGGCGGATCCGCCGCTCGCCGGGCGGATCACGCTCCCTCATCATTGGTATCAGGGGCGGAGACGCGAGCGGTGAGCCTCCCCGCCGTTGGGAGAGATCTTCACTTGCCAAACTCAATTCTCAGCATGTCGTGGAGGCGGCTGGAGCTCGCCGCGCTCTGCGCCTACGCGCTGGGGTTCTACCTCGTCGTGATCCGGAAGTCGCTTCGCCTCTCTCATGATTACTCTGGGAGGTTGTACGGCCTACGAGCAGGCTCACTCGCTGGCCATCTGAACGACTTGTCCGATGCACAATGGAGAAATTTCCGGGGGAACTTACCTGTTCTTACCATTGTGATGGGTGCATTTCTGATGTTGGCGAATATGCTTCGCTACTGCTACAGCTTGAAGGGAAGAGGGGCCTCTTTGGTGTGGCTTCTCCTGTCTGTCACCTATTTATGCTATCTACATGGTGCTTGTGTTAGTTTCATTCTCCTAATAGCATTGATTAACTACTCCATAGTGAAGCTATTTTCTCGATATAAATATTGTGTTGGGCTCATTTGGAGCTTCAACTTAGCTGTCCTTATACTTAACCGAGTCTATGAAGGCTATTCATTCTCATTGTTTGGGCAACAGCTTGCTTTTCTAGACAATCATCGGGGTACATTTCGGTGGCACATTTGCTTCAATTTTGTTGTATTACGAATGATAAGCTTTGGATGCGATTACTGCTGGTCACTCCGGTCTTCTCAGTTTGATCATAAGAAGCATATGCAGCGATGCCAAGTTTGTTATTCTGGCAAAACATGCTACTTTGCTTTGCAGGAGAGAGCGCTCATTGGTGACAAATACACATTACTAACATATTTATGCTACTTGACATATGCTCCACTCTACATCGCTGGACCTATTGTAAGCTACAATGCATTTGCAGCCCAGTTAGATGCACCCCAGAAAAATTATTCAGTTGCACAAATATCTTGGTATGGGGTGAGGTGGATCCTAAGTTTCCTTCTTATGGAAGCTATGACACATTTTTTCCACTACAACGCCTTTGTAGTTAGCCGATTATGGCAGCAATTATCGCCATTTGAGATCTTCATCATTAGTTATGGGGTGCTGAACTTTATGTGGTTGAAATTCTTCCTGATTTGGCGCTACTTCAGGTTTTGGTCACTGGTAGGAGGAGTTGAGACGCCTGAAAATATGCCAAGGTGTATAAATAATTGTCATGATCTGGAGAGTTTCTGGAAAAGCTGGCATGCTTCTTTTAACAGATGGTTGGTCAGGTATCTGACATTCCTCTTGGGGGTGCTCAAAGAAAACTACTTAGTATCTGGGTGGTATTCACGTTTGTAGCAGTTTGGCATGACCTGGAATGGAAACTTATTTCATGGGCATGGTTAACATGCTTATTTTTCGTCCCTGAAATATTGGTCAAGTCTCTATCCAACAAGTTCCAGCCAAGAAGTGCCCTTGGGTTGTTCATTCACCGGGAGTTAAGTGCAATTGCTGGTGCTGTGACAATAAGCTGCCTTATGGTGGCAAACCTTGTCGGTTATGTTGTAGGACCCTCCGGCATTAAACTTCTCATGTCACGAATGCTTGGGAAGGATGCCCTTCCTGTCCTTGCCTTCATATTTATCTCATTCTATGTGGGAGTTAAGCTTATGTTTCATATACGTGACGCACATGAGAATCAAGGGTGATAACTGATAAGTCGACGGGGAAGAACTCCCACTGTAAAATGTAGACAAGCAGCTGCGATGAGACGCTGTCAAGACTCAAGACAAATAGGCTTACCTCTTCTTTTATGGGATTTGTTTGACACGAACGAAAAGCTCCTCTGACCGCCGAGCTTTGGCTCTTCTGTAATGTAGGGCTTATTGATTGGGGTAGTGAAGATAATAGAGCACAAATGGAAATGGTACTACGAGCTCTGTTTTTAAGAGTGGAAATGCAGGGCACACTCCATTGGATTGAAGGAATTTCAATTCTCAGACAATTTTCCTATGA]
consensusID : consensus_2658#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 728 fasta sequence
[TCTTGGGGGTGCTCAAAGAAAACTACTTAGTATCTGGGTGGTATTCACGTTTGTAGCAGTTTGGCATGACCTGAAATGGAAACTTATTTCATGGGCATGGTCAACATGCTTATATTTCGTCCCTGAAATATGGGTCAAGTCTCTATCCAACAAGTTCCAGCCAAGAAGTGCCCTTGGGTTGTTCCTTCCCCGGGAGTTAAGTGCAATTGCTGGTGCTGTGACAATAAGCTGCCTTATGGTGGCAAACCTTGTCGGTTATGTTGTAGGACCCTCCGGCATTAAACTTCTCATGTCACGAATGCTTGGGAAGGATGCCCTTCCTGTCCCTGCCTTCATATTTATCTCCTTCTATGTGGGAGTTAAGCTTATGTTTCATATACGTGACGCCCATAAGAATCAAGGGTGATAACTGATAAGTCAACGGGGAAGAACTCCCCCTGTAAAATGTAGACAAGCAGCTGCGATGAGACGCTGTCAAGACTCAAGACAAATAGGCTTACCTCTTCTTTTATGGGATTTGTTTGACCCGAACAAAAAGCTCCTCTGACCGCCGAGCTTTGGCTTTTTTGTAACGTAGGGCTTATTGATTGGGGTAGTGAAGATAATAGAGCCCAAATGGAAATGGTACTTCGAGCTCTGTTTTTAAGAGTGGAAATGCAGGGCCCCCTCCCTTGGATTGAAGGAATTTCAATTCTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CA763333 [TCTTGGGGGTGCTCAAAGAAAACTACTTAGTATCTGGGTGGTATTCACGTTTGTAGCAGTTTGGCATGACCTGAAATGGAAACTTATTTCATGGGCATGGTCAACATGCTTATATTTCGTCCCTGAAATATGGGTCAAGTCTCTATCCAACAAGTTCCAGCCAAGAAGTGCCCTTGGGTTGTTCCTTCCCCGGGAGTTAAGTGCAATTGCTGGTGCTGTGACAATAAGCTGCCTTATGGTGGCAAACCTTGTCGGTTATGTTGTAGGACCCTCCGGCATTAAACTTCTCATGTCACGAATGCTTGGGAAGGATGCCCTTCCTGTCCCTGCCTTCATATTTATCTCCTTCTATGTGGGAGTTAAGCTTATGTTTCATATACGTGACGCCCATAAGAATCAAGGGTGATAACTGATAAGTCAACGGGGAAGAACTCCCCCTGTAAAATGTAGACAAGCAGCTGCGATGAGACGCTGTCAAGACTCAAGACAAATAGGCTTACCTCTTCTTTTATGGGATTTGTTTGACCCGAACAAAAAGCTCCTCTGACCGCCGAGCTTTGGCTTTTTTGTAACGTAGGGCTTATTGATTGGGGTAGTGAAGATAATAGAGCCCAAATGGAAATGGTACTTCGAGCTCTGTTTTTAAGAGTGGAAATGCAGGGCCCCCTCCCTTGGATTGAAGGAATTTCAATTCTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2658#0 GCGACACGCACCACCGTCTCCGCCTCCGCGCCGCCGCCGTCGTCTCCGCCGCCTCCGGTG 60
consensus_2658#1 ------------------------------------------------------------
consensus_2658#0 GAATCCTCGCCGCGGCCCCGTCACACCTCATCCTCTTCGCTTGGCCTTCTCCGCATCCGG 120
consensus_2658#1 ------------------------------------------------------------
consensus_2658#0 TTATTTTAGGTCGGAGAAGGCGGCGGATCCGCCGCTCGCCGGGCGGATCACGCTCCCTCA 180
consensus_2658#1 ------------------------------------------------------------
consensus_2658#0 TCATTGGTATCAGGGGCGGAGACGCGAGCGGTGAGCCTCCCCGCCGTTGGGAGAGATCTT 240
consensus_2658#1 ------------------------------------------------------------
consensus_2658#0 CACTTGCCAAACTCAATTCTCAGCATGTCGTGGAGGCGGCTGGAGCTCGCCGCGCTCTGC 300
consensus_2658#1 ------------------------------------------------------------
consensus_2658#0 GCCTACGCGCTGGGGTTCTACCTCGTCGTGATCCGGAAGTCGCTTCGCCTCTCTCATGAT 360
consensus_2658#1 ------------------------------------------------------------
consensus_2658#0 TACTCTGGGAGGTTGTACGGCCTACGAGCAGGCTCACTCGCTGGCCATCTGAACGACTTG 420
consensus_2658#1 ------------------------------------------------------------
consensus_2658#0 TCCGATGCACAATGGAGAAATTTCCGGGGGAACTTACCTGTTCTTACCATTGTGATGGGT 480
consensus_2658#1 ------------------------------------------------------------
consensus_2658#0 GCATTTCTGATGTTGGCGAATATGCTTCGCTACTGCTACAGCTTGAAGGGAAGAGGGGCC 540
consensus_2658#1 ------------------------------------------------------------
consensus_2658#0 TCTTTGGTGTGGCTTCTCCTGTCTGTCACCTATTTATGCTATCTACATGGTGCTTGTGTT 600
consensus_2658#1 ------------------------------------------------------------
consensus_2658#0 AGTTTCATTCTCCTAATAGCATTGATTAACTACTCCATAGTGAAGCTATTTTCTCGATAT 660
consensus_2658#1 ------------------------------------------------------------
consensus_2658#0 AAATATTGTGTTGGGCTCATTTGGAGCTTCAACTTAGCTGTCCTTATACTTAACCGAGTC 720
consensus_2658#1 ------------------------------------------------------------
consensus_2658#0 TATGAAGGCTATTCATTCTCATTGTTTGGGCAACAGCTTGCTTTTCTAGACAATCATCGG 780
consensus_2658#1 ------------------------------------------------------------
consensus_2658#0 GGTACATTTCGGTGGCACATTTGCTTCAATTTTGTTGTATTACGAATGATAAGCTTTGGA 840
consensus_2658#1 ------------------------------------------------------------
consensus_2658#0 TGCGATTACTGCTGGTCACTCCGGTCTTCTCAGTTTGATCATAAGAAGCATATGCAGCGA 900
consensus_2658#1 ------------------------------------------------------------
consensus_2658#0 TGCCAAGTTTGTTATTCTGGCAAAACATGCTACTTTGCTTTGCAGGAGAGAGCGCTCATT 960
consensus_2658#1 ------------------------------------------------------------
consensus_2658#0 GGTGACAAATACACATTACTAACATATTTATGCTACTTGACATATGCTCCACTCTACATC 1020
consensus_2658#1 ------------------------------------------------------------
consensus_2658#0 GCTGGACCTATTGTAAGCTACAATGCATTTGCAGCCCAGTTAGATGCACCCCAGAAAAAT 1080
consensus_2658#1 ------------------------------------------------------------
consensus_2658#0 TATTCAGTTGCACAAATATCTTGGTATGGGGTGAGGTGGATCCTAAGTTTCCTTCTTATG 1140
consensus_2658#1 ------------------------------------------------------------
consensus_2658#0 GAAGCTATGACACATTTTTTCCACTACAACGCCTTTGTAGTTAGCCGATTATGGCAGCAA 1200
consensus_2658#1 ------------------------------------------------------------
consensus_2658#0 TTATCGCCATTTGAGATCTTCATCATTAGTTATGGGGTGCTGAACTTTATGTGGTTGAAA 1260
consensus_2658#1 ------------------------------------------------------------
consensus_2658#0 TTCTTCCTGATTTGGCGCTACTTCAGGTTTTGGTCACTGGTAGGAGGAGTTGAGACGCCT 1320
consensus_2658#1 ------------------------------------------------------------
consensus_2658#0 GAAAATATGCCAAGGTGTATAAATAATTGTCATGATCTGGAGAGTTTCTGGAAAAGCTGG 1380
consensus_2658#1 ------------------------------------------------------------
consensus_2658#0 CATGCTTCTTTTAACAGATGGTTGGTCAGGTATCTGACATTCCTCTTGGGGGTGCTCAAA 1440
consensus_2658#1 -------------------------------------------TCTTGGGGGTGCTCAAA 17
*****************
consensus_2658#0 GAAAACTACTTAGTATCTGGGTGGTATTCACGTTTGTAGCAGTTTGGCATGACCTGGAAT 1500
consensus_2658#1 GAAAACTACTTAGTATCTGGGTGGTATTCACGTTTGTAGCAGTTTGGCATGACCTGAAAT 77
******************************************************** ***
consensus_2658#0 GGAAACTTATTTCATGGGCATGGTTAACATGCTTATTTTTCGTCCCTGAAATATTGGTCA 1560
consensus_2658#1 GGAAACTTATTTCATGGGCATGGTCAACATGCTTATATTTCGTCCCTGAAATATGGGTCA 137
************************ *********** ***************** *****
consensus_2658#0 AGTCTCTATCCAACAAGTTCCAGCCAAGAAGTGCCCTTGGGTTGTTCATTCACCGGGAGT 1620
consensus_2658#1 AGTCTCTATCCAACAAGTTCCAGCCAAGAAGTGCCCTTGGGTTGTTCCTTCCCCGGGAGT 197
*********************************************** *** ********
consensus_2658#0 TAAGTGCAATTGCTGGTGCTGTGACAATAAGCTGCCTTATGGTGGCAAACCTTGTCGGTT 1680
consensus_2658#1 TAAGTGCAATTGCTGGTGCTGTGACAATAAGCTGCCTTATGGTGGCAAACCTTGTCGGTT 257
************************************************************
consensus_2658#0 ATGTTGTAGGACCCTCCGGCATTAAACTTCTCATGTCACGAATGCTTGGGAAGGATGCCC 1740
consensus_2658#1 ATGTTGTAGGACCCTCCGGCATTAAACTTCTCATGTCACGAATGCTTGGGAAGGATGCCC 317
************************************************************
consensus_2658#0 TTCCTGTCCTTGCCTTCATATTTATCTCATTCTATGTGGGAGTTAAGCTTATGTTTCATA 1800
consensus_2658#1 TTCCTGTCCCTGCCTTCATATTTATCTCCTTCTATGTGGGAGTTAAGCTTATGTTTCATA 377
********* ****************** *******************************
consensus_2658#0 TACGTGACGCACATGAGAATCAAGGGTGATAACTGATAAGTCGACGGGGAAGAACTCCCA 1860
consensus_2658#1 TACGTGACGCCCATAAGAATCAAGGGTGATAACTGATAAGTCAACGGGGAAGAACTCCCC 437
********** *** *************************** ****************
consensus_2658#0 CTGTAAAATGTAGACAAGCAGCTGCGATGAGACGCTGTCAAGACTCAAGACAAATAGGCT 1920
consensus_2658#1 CTGTAAAATGTAGACAAGCAGCTGCGATGAGACGCTGTCAAGACTCAAGACAAATAGGCT 497
************************************************************
consensus_2658#0 TACCTCTTCTTTTATGGGATTTGTTTGACACGAACGAAAAGCTCCTCTGACCGCCGAGCT 1980
consensus_2658#1 TACCTCTTCTTTTATGGGATTTGTTTGACCCGAACAAAAAGCTCCTCTGACCGCCGAGCT 557
***************************** ***** ************************
consensus_2658#0 TTGGCTCTTCTGTAATGTAGGGCTTATTGATTGGGGTAGTGAAGATAATAGAGCACAAAT 2040
consensus_2658#1 TTGGCTTTTTTGTAACGTAGGGCTTATTGATTGGGGTAGTGAAGATAATAGAGCCCAAAT 617
****** ** ***** ************************************** *****
consensus_2658#0 GGAAATGGTACTACGAGCTCTGTTTTTAAGAGTGGAAATGCAGGGCACACTCCATTGGAT 2100
consensus_2658#1 GGAAATGGTACTTCGAGCTCTGTTTTTAAGAGTGGAAATGCAGGGCCCCCTCCCTTGGAT 677
************ ********************************* * **** ******
consensus_2658#0 TGAAGGAATTTCAATTCTCAGACAATTTTCCTATGA--------------- 2136
consensus_2658#1 TGAAGGAATTTCAATTCTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 728
******************* * ** * *
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||