These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3195#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1829 fasta sequence [ATGGGTGCTCAAGTTCATGGCTGATCTGAGAGAAATGTTCGTGGACCTAAGAAGTAGCTCTATGATCCAGTGTTCATCGATCCTCCATGTGAGATTCGCGTGAGAGTTCATCGTCTTTGCTTGCTCGGATAATCAATCACCAATCCAGCGGGCGGCCGGCCACTGGCTTGTGGTTTGGTTTTGGGGGAGAGATTGAGATTTTGCTTACTTTGAGTGAGATCTAGTTCTTCTTGAGTTCTTCCTCATCAAGAAGAGGAAGCAGCTCGCATGCCCATCTCCCCTCTCCTCGCCCACCTCGCTCCGTCCTCGGTTGCTCCGGCGGCATTTGGTGCCCGTCCGGCGCGGCGGCGCTTCGTTGGTAAATCCGAATTCGCGTCTCCAAGCTCTGCTATCTTTTTGTGCTTTGGGTTGTTCATCTCGTGCAAGGTAGGAGTTGTTAGGGTTAAGCTAGAGAAATGGTTTGCTAGCTAATGATTTTTACTTGTACTTATGATTCAGCATGTTTCTGAACCTTTGGGTTTTATGACTGGAGCAGAGAGTGAAGAGTAATCTGGACTAGTTTTTTTTAAAACTGTGTGCACTTGCCGTGTTGTTCGCTGCAGCCTACAGCATAGTTTCAGCTCAAATGACTTGAATTATACAGTACATAGAAAGATGAAGGAATTGGAACATTTGTTAATCTGTGTTACTCATAATATTGTGGAGCTTCTATTGAATGCATTACAGTAGAAAAAAAAAAGGTCAACTATGATATTTATGTTGCAGGAAAGTGTCTGATGTTTTTATAGTTTGAAACTGCTGCTAGCTGAAAGGAAAACAGGCATGGGCAATAGAAGTTTTGACTTGAGTTGTTCTTTGAGAAAAGAGGAGGAAAATGGCACAAATTTGTCGCCATTTGTCCGCAAACTTTTTAAAGAGTGGGATGACCGCAAGGCAAGGGGTTTGTTTCACCATGACATCAGTTCCTGCGAGACAAAGGTACTACCTGGTGAACACAATTTTGTGGCGACATTAATAGAAGGACGTGACCAGAAGAAGCGGCCTACTCAATTTGGAATGAACCAAGTCCTGCAGCCTTTTGATAGCGTGAAATTCAATTTCACTAAAGTTAGCCCAGAGGAAGTGATCTTCACATTCAAAGAATCTCAGAATGACTCTGTAAAGTACTTCGACAATGTTCCTCATGCTGTTGCAGCTTCTCCTACTGCCATTTTGATCAATGTTAGTGAGTGCTACACCCCTCTAACAGTTATGCCTAAATCCTAATCCAATATGGTGCACACATGATCTGTTTTTGCCATTGTTTGTTTGATAGGTGAGTCCAATTGGCTACTGCCATGTGCTTCTGATCCCTCGAATCCAGGATTGCTTACCGCAAAGGGTTGATAAAGAGAGCTTCCTACTTGCCATGTATGTTGCAAGTGAAGCAAAGGATCCATTCTTCAGAGTTGGTTACAACAGTCTGGGTGGTTTCGCAACTATCAATCATCTCCACTTCCAGGCGTACTATCTGAAAGTGCAATATCCAGTCGAGAAGGCACTGACGGAGAAGCTTACGACTCTGGGGAATGGTGTCAGCATTATTCAGCTGGTTCAGTATCCAGTTAGTGGTTTTGTATTTGAAGGAGGGGCATGCCTGGAGGATTTGTCCGATGTTGTTTCAAAAGTCTGCATCTTCTTGCAAGAGAATAATAAACCTTTCAATGCCCTCATCTCTGAATCTGGCAAGAGAGTGTTCCTGCTACCACAGTGCTACGCCGAGAAGCAGGCCCTCGGGAGAGTGAGCCAAGAATTCCTCGACATGAGAATAAACCCAGCAGTCTGGGAGC] [+] EMBL AK100274 [ATGGGTGCTCAAGTTCATGGCTGATCTGAGAGAAATGTTCGTGGACCTAAGAAGTAGCTCTATGATCCAGTGTTCATCGATCCTCCATGTGAGATTCGCGTGAGAGTTCATCGTCTTTGCTTGCTCGGATAATCAATCACCAATCCAGCGGGCGGCCGGCCACTGGCTTGTGGTTTGGTTTTGGGGGAGAGATTGAGATTTTGCTTACTTTGAGTGAGATCTAGTTCTTCTTGAGTTCTTCCTCATCAAGAAGAGGAAGCAGCTCGCATGCCCATCTCCCCTCTCCTCGCCCACCTCGCTCCGTCCTCGGTTGCTCCGGCGGCATTTGGTGCCCGTCCGGCGCGGCGGCGCTTCGTTGGTAAATCCGAATTCGCGTCTCCAAGCTCTGCTATCTTTTTGTGCTTTGGGTTGTTCATCTCGTGCAAGGTAGGAGTTGTTAGGGTTAAGCTAGAGAAATGGTTTGCTAGCTAATGATTTTTACTTGTACTTATGATTCAGCATGTTTCTGAACCTTTGGGTTTTATGACTGGAGCAGAGAGTGAAGAGTAATCTGGACTAGTTTTTTTTAAAACTGTGTGCACTTGCCGTGTTGTTCGCTGCAGCCTACAGCATAGTTTCAGCTCAAATGACTTGAATTATACAGTACATAGAAAGATGAAGGAATTGGAACATTTGTTAATCTGTGTTACTCATAATATTGTGGAGCTTCTATTGAATGCATTACAGTAGAAAAAAAAAAGGTCAACTATGATATTTATGTTGCAGGAAAGTGTCTGATGTTTTTATAGTTTGAAACTGCTGCTAGCTGAAAGGAAAACAGGCATGGGCAATAGAAGTTTTGACTTGAGTTGTTCTTTGAGAAAAGAGGAGGAAAATGGCACAAATTTGTCGCCATTTGTCCGCAAACTTTTTAAAGAGTGGGATGACCGCAAGGCAAGGGGTTTGTTTCACCATGACATCAGTTCCTGCGAGACAAAGGTACTACCTGGTGAACACAATTTTGTGGCGACATTAATAGAAGGACGTGACCAGAAGAAGCGGCCTACTCAATTTGGAATGAACCAAGTCCTGCAGCCTTTTGATAGCGTGAAATTCAATTTCACTAAAGTTAGCCCAGAGGAAGTGATCTTCACATTCAAAGAATCTCAGAATGACTCTGTAAAGTACTTCGACAATGTTCCTCATGCTGTTGCAGCTTCTCCTACTGCCATTTTGATCAATGTTAGTGAGTGCTACACCCCTCTAACAGTTATGCCTAAATCCTAATCCAATATGGTGCACACATGATCTGTTTTTGCCATTGTTTGTTTGATAGGTGAGTCCAATTGGCTACTGCCATGTGCTTCTGATCCCTCGAATCCAGGATTGCTTACCGCAAAGGGTTGATAAAGAGAGCTTCCTACTTGCCATGTATGTTGCAAGTGAAGCAAAGGATCCATTCTTCAGAGTTGGTTACAACAGTCTGGGTGGTTTCGCAACTATCAATCATCTCCACTTCCAGGCGTACTATCTGAAAGTGCAATATCCAGTCGAGAAGGCACTGACGGAGAAGCTTACGACTCTGGGGAATGGTGTCAGCATTATTCAGCTGGTTCAGTATCCAGTTAGTGGTTTTGTATTTGAAGGAGGGGCATGCCTGGAGGATTTGTCCGATGTTGTTTCAAAAGTCTGCATCTTCTTGCAAGAGAATAATAAACCTTTCAATGCCCTCATCTCTGAATCTGGCAAGAGAGTGTTCCTGCTACCACAGTGCTACGCCGAGAAGCAGGCCCTCGGGAGAGTGAGCCAAGAATTCCTCGACATGAGAATAAACCCAGCAGTCTGGGAGC] consensusID : consensus_3195#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 374 fasta sequence [TTCATCGTCTTTGCTTGCTCGGATAATCAATCACCAATCCAGCGGGCGGCCGGCCACTGGCTTGTGGTTTGGTTTTGGGGGAGAGATTGAGATTTTGCTTACTTTGAGTGAGATCTAGTTCTTCTTGAGTTCTTCCTCATCAAGAAGAGGAAGCAGCTCGCATGCCCATCTCCCCTCTCCTCGCCCACCTCGCTCCGTCCTCGGTTGCTCCGGCGGCATTTGGTGCCCGTCCGGCGCGGCGGCGCTTCGTTGGAAAGTGTCTGATGTTTTTATAGTTTGAAACTGCTGCTAGCTGAAAGGAAAACAGGCATGGGCAATAGAAGTTTTGACTTGAGTTGTTCTTTGAGAAAAGAGGAGGAAAATGGCACAAATTT] [+] EMBL AU069750 [TTCATCGTCTTTGCTTGCTCGGATAATCAATCACCAATCCAGCGGGCGGCCGGCCACTGGCTTGTGGTTTGGTTTTGGGGGAGAGATTGAGATTTTGCTTACTTTGAGTGAGATCTAGTTCTTCTTGAGTTCTTCCTCATCAAGAAGAGGAAGCAGCTCGCATGCCCATCTCCCCTCTCCTCGCCCACCTCGCTCCGTCCTCGGTTGCTCCGGCGGCATTTGGTGCCCGTCCGGCGCGGCGGCGCTTCGTTGGAAAGTGTCTGATGTTTTTATAGTTTGAAACTGCTGCTAGCTGAAAGGAAAACAGGCATGGGCAATAGAAGTTTTGACTTGAGTTGTTCTTTGAGAAAAGAGGAGGAAAATGGCACAAATTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3195#0 ATGGGTGCTCAAGTTCATGGCTGATCTGAGAGAAATGTTCGTGGACCTAAGAAGTAGCTC 60 consensus_3195#1 ------------------------------------------------------------ consensus_3195#0 TATGATCCAGTGTTCATCGATCCTCCATGTGAGATTCGCGTGAGAGTTCATCGTCTTTGC 120 consensus_3195#1 ----------------------------------------------TTCATCGTCTTTGC 14 ************** consensus_3195#0 TTGCTCGGATAATCAATCACCAATCCAGCGGGCGGCCGGCCACTGGCTTGTGGTTTGGTT 180 consensus_3195#1 TTGCTCGGATAATCAATCACCAATCCAGCGGGCGGCCGGCCACTGGCTTGTGGTTTGGTT 74 ************************************************************ consensus_3195#0 TTGGGGGAGAGATTGAGATTTTGCTTACTTTGAGTGAGATCTAGTTCTTCTTGAGTTCTT 240 consensus_3195#1 TTGGGGGAGAGATTGAGATTTTGCTTACTTTGAGTGAGATCTAGTTCTTCTTGAGTTCTT 134 ************************************************************ consensus_3195#0 CCTCATCAAGAAGAGGAAGCAGCTCGCATGCCCATCTCCCCTCTCCTCGCCCACCTCGCT 300 consensus_3195#1 CCTCATCAAGAAGAGGAAGCAGCTCGCATGCCCATCTCCCCTCTCCTCGCCCACCTCGCT 194 ************************************************************ consensus_3195#0 CCGTCCTCGGTTGCTCCGGCGGCATTTGGTGCCCGTCCGGCGCGGCGGCGCTTCGTTGGT 360 consensus_3195#1 CCGTCCTCGGTTGCTCCGGCGGCATTTGGTGCCCGTCCGGCGCGGCGGCGCTTCGTTGGA 254 *********************************************************** consensus_3195#0 AAATCCGAATTCGCGTCTCCAAGCTCTGCTATCTTTTTGTGCTTTGGGTTGTTCAT-CTC 419 consensus_3195#1 AAGTGT---CTGATGTTTTTATAGTTTGAAACTGCTGCTAGCTGAAAGGAAAACAGGCAT 311 ** * * ** * * * ** * * *** * ** * consensus_3195#0 GTGCAAGGTAGGAGTTG-TTAGGGTTAAGCTA-GAGAAATGGTTTGCTAGCTAATGATTT 477 consensus_3195#1 GGGCAATAGAAGTTTTGACTTGAGTTGTTCTTTGAGAAAAGA---GGAGGAAAATGGCAC 368 * **** * * *** * * *** ** ****** * * * **** consensus_3195#0 TTACTTGTACTTATGATTCAGCATGTTTCTGAACCTTTGGGTTTTATGACTGGAGCAGAG 537 consensus_3195#1 AAATTT------------------------------------------------------ 374 * ** consensus_3195#0 AGTGAAGAGTAATCTGGACTAGTTTTTTTTAAAACTGTGTGCACTTGCCGTGTTGTTCGC 597 consensus_3195#1 ------------------------------------------------------------ consensus_3195#0 TGCAGCCTACAGCATAGTTTCAGCTCAAATGACTTGAATTATACAGTACATAGAAAGATG 657 consensus_3195#1 ------------------------------------------------------------ consensus_3195#0 AAGGAATTGGAACATTTGTTAATCTGTGTTACTCATAATATTGTGGAGCTTCTATTGAAT 717 consensus_3195#1 ------------------------------------------------------------ consensus_3195#0 GCATTACAGTAGAAAAAAAAAAGGTCAACTATGATATTTATGTTGCAGGAAAGTGTCTGA 777 consensus_3195#1 ------------------------------------------------------------ consensus_3195#0 TGTTTTTATAGTTTGAAACTGCTGCTAGCTGAAAGGAAAACAGGCATGGGCAATAGAAGT 837 consensus_3195#1 ------------------------------------------------------------ consensus_3195#0 TTTGACTTGAGTTGTTCTTTGAGAAAAGAGGAGGAAAATGGCACAAATTTGTCGCCATTT 897 consensus_3195#1 ------------------------------------------------------------ consensus_3195#0 GTCCGCAAACTTTTTAAAGAGTGGGATGACCGCAAGGCAAGGGGTTTGTTTCACCATGAC 957 consensus_3195#1 ------------------------------------------------------------ consensus_3195#0 ATCAGTTCCTGCGAGACAAAGGTACTACCTGGTGAACACAATTTTGTGGCGACATTAATA 1017 consensus_3195#1 ------------------------------------------------------------ consensus_3195#0 GAAGGACGTGACCAGAAGAAGCGGCCTACTCAATTTGGAATGAACCAAGTCCTGCAGCCT 1077 consensus_3195#1 ------------------------------------------------------------ consensus_3195#0 TTTGATAGCGTGAAATTCAATTTCACTAAAGTTAGCCCAGAGGAAGTGATCTTCACATTC 1137 consensus_3195#1 ------------------------------------------------------------ consensus_3195#0 AAAGAATCTCAGAATGACTCTGTAAAGTACTTCGACAATGTTCCTCATGCTGTTGCAGCT 1197 consensus_3195#1 ------------------------------------------------------------ consensus_3195#0 TCTCCTACTGCCATTTTGATCAATGTTAGTGAGTGCTACACCCCTCTAACAGTTATGCCT 1257 consensus_3195#1 ------------------------------------------------------------ consensus_3195#0 AAATCCTAATCCAATATGGTGCACACATGATCTGTTTTTGCCATTGTTTGTTTGATAGGT 1317 consensus_3195#1 ------------------------------------------------------------ consensus_3195#0 GAGTCCAATTGGCTACTGCCATGTGCTTCTGATCCCTCGAATCCAGGATTGCTTACCGCA 1377 consensus_3195#1 ------------------------------------------------------------ consensus_3195#0 AAGGGTTGATAAAGAGAGCTTCCTACTTGCCATGTATGTTGCAAGTGAAGCAAAGGATCC 1437 consensus_3195#1 ------------------------------------------------------------ consensus_3195#0 ATTCTTCAGAGTTGGTTACAACAGTCTGGGTGGTTTCGCAACTATCAATCATCTCCACTT 1497 consensus_3195#1 ------------------------------------------------------------ consensus_3195#0 CCAGGCGTACTATCTGAAAGTGCAATATCCAGTCGAGAAGGCACTGACGGAGAAGCTTAC 1557 consensus_3195#1 ------------------------------------------------------------ consensus_3195#0 GACTCTGGGGAATGGTGTCAGCATTATTCAGCTGGTTCAGTATCCAGTTAGTGGTTTTGT 1617 consensus_3195#1 ------------------------------------------------------------ consensus_3195#0 ATTTGAAGGAGGGGCATGCCTGGAGGATTTGTCCGATGTTGTTTCAAAAGTCTGCATCTT 1677 consensus_3195#1 ------------------------------------------------------------ consensus_3195#0 CTTGCAAGAGAATAATAAACCTTTCAATGCCCTCATCTCTGAATCTGGCAAGAGAGTGTT 1737 consensus_3195#1 ------------------------------------------------------------ consensus_3195#0 CCTGCTACCACAGTGCTACGCCGAGAAGCAGGCCCTCGGGAGAGTGAGCCAAGAATTCCT 1797 consensus_3195#1 ------------------------------------------------------------ consensus_3195#0 CGACATGAGAATAAACCCAGCAGTCTGGGAGC 1829 consensus_3195#1 -------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||