These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_353#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 817 fasta sequence [CCCTTAATTTATGATAAGGGAAAAAAAAGGGTAAATGTTATGCGCACAATGAGAACATCAAGTACCATGCGTTCAGTAAACCAAAACAATTCTCCAACATATGAAGGAAAAAAAAAGAGAAATAAAAACCCCGAAAACTTCTCTATATGCACAATTCTCACTTCGAGACCCCGAATCATGCTCATCAGAAGATCAGATTATACACAGGTATGAATGAATCACAAATTCTTCGAAAGAATCGGTGTAATTTCAGTTCTACACGACAACATTCTCCTCGAACCCTTCTGGCTCCGGAGCAATCTCCCTGGAAGCCCTCTTGAAGGAGAAGGAAGTCTCTCCTCCGCTTCCATGTGATCTAGTTGAATGTTTCCTGTCAAGCATTTGCCCTGACGACGACGCGGTTTCAAGGCTCTGGTACCGGTTTCCTTGAAGGAAAGCAGACTGCCAGGAGCTCCGGGATGATGAGCTCCTGAGTCTTGCTGAATTGGAGCGGGACGCCATTCGCAGAATCTTTAGCGGGTTCTCCAGGGCTCTCAGGACGTACCGAGCAGAAGGCCGCCTTGATGGCTTTGAATTCAGGCATGTCTTCGCGACGATTGCCATGGCCCACACCTCTTCGAGATGATCCTCATCGACAATAAGCAAAGGATCGATGATCCTAGAAATGCTCTCCTTGTCGTTCATGTCGATGCGGTTTAGTGTGTTTGTCATCCACTCTTCGGAGGCAGCATCGTTTGATCCACTTACACCAAAGTTGCCTGTTACTAGTTCAAGCATCACCTTTCCAAGCAGTAAACATCATAAGAACAAGTTGCTG] [+] EMBL CB634038 [CCCTTAATTTATGATAAGGGAAAAAAAAGGGTAAATGTTATGCGCACAATGAGAACATCAAGTACCATGCGTTCAGTAAACCAAAACAATTCTCCAACATATGAAGGAAAAAAAAAGAGAAATAAAAACCCCGAAAACTTCTCTATATGCACAATTCTCACTTCGAGACCCCGAATCATGCTCATCAGAAGATCAGATTATACACAGGTATGAATGAATCACAAATTCTTCGAAAGAATCGGTGTAATTTCAGTTCTACACGACAACATTCTCCTCGAACCCTTCTGGCTCCGGAGCAATCTCCCTGGAAGCCCTCTTGAAGGAGAAGGAAGTCTCTCCTCCGCTTCCATGTGATCTAGTTGAATGTTTCCTGTCAAGCATTTGCCCTGACGACGACGCGGTTTCAAGGCTCTGGTACCGGTTTCCTTGAAGGAAAGCAGACTGCCAGGAGCTCCGGGATGATGAGCTCCTGAGTCTTGCTGAATTGGAGCGGGACGCCATTCGCAGAATCTTTAGCGGGTTCTCCAGGGCTCTCAGGACGTACCGAGCAGAAGGCCGCCTTGATGGCTTTGAATTCAGGCATGTCTTCGCGACGATTGCCATGGCCCACACCTCTTCGAGATGATCCTCATCGACAATAAGCAAAGGATCGATGATCCTAGAAATGCTCTCCTTGTCGTTCATGTCGATGCGGTTTAGTGTGTTTGTCATCCACTCTTCGGAGGCAGCATCGTTTGATCCACTTACACCAAAGTTGCCTGTTACTAGTTCAAGCATCACCTTTCCAAGCAGTAAACATCATAAGAACAAGTTGCTG] consensusID : consensus_353#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 606 fasta sequence [ACCTCGTGCCGGATCTGTTACGGGCAAAAAAGGGTAACTGTTATGCGCACAATGAGACCGTTCAGTCCCCTGCTTTCAGTAAACCACAACATTTTTCCAGCATCTGAAGGAAAAAAAACAGGAGAAATAAAAACCCCGCAAACTTGCTCTATATGCACAATTCTCGCTTCGAGACCCCGAATCATGCTCATCAGAAGATCAGCTTATACCCAGGTATGAATGAATCACAAATTCTTCGAAAGAATCGGTGTAATTTCAGTTCTACACGGCAACATTCTCCTCGAACCCTTCTGGCTCCGGAGCAATCTCCCTGGAAGCCCTCTTGAAGGAGAAGGAAGTCTCTCCTCCGCTTCCATGTGGATCTAGTTGAATGTTTCCTGTCAAGCATTTGCCCTGACGACGACGCGGTTTCAAGGCTCTGGTACCGGTTTCCTTGAAGGAAAGCAGACTGCCAGGAGCTCCGGGATGATGAGCTCCTGAGTCTTGCTGAATTGGAGCGGGACGCCATTCGCAGAATCTTTAGCGGGTTCTCCAGGGCTCTCAGAACGTACCGAGCAGAAGGCCGCCTTGATGGCTTTGAATTCAGGCATGTCTTCGCGACGATTG] [-] EMBL CA755542 [ACCTCGTGCCGGATCTGTTACGGGCAAAAAAGGGTAACTGTTATGCGCACAATGAGACCGTTCAGTCCCCTGCTTTCAGTAAACCACAACATTTTTCCAGCATCTGAAGGAAAAAAAACAGGAGAAATAAAAACCCCGCAAACTTGCTCTATATGCACAATTCTCGCTTCGAGACCCCGAATCATGCTCATCAGAAGATCAGCTTATACCCAGGTATGAATGAATCACAAATTCTTCGAAAGAATCGGTGTAATTTCAGTTCTACACGGCAACATTCTCCTCGAACCCTTCTGGCTCCGGAGCAATCTCCCTGGAAGCCCTCTTGAAGGAGAAGGAAGTCTCTCCTCCGCTTCCATGTGGATCTAGTTGAATGTTTCCTGTCAAGCATTTGCCCTGACGACGACGCGGTTTCAAGGCTCTGGTACCGGTTTCCTTGAAGGAAAGCAGACTGCCAGGAGCTCCGGGATGATGAGCTCCTGAGTCTTGCTGAATTGGAGCGGGACGCCATTCGCAGAATCTTTAGCGGGTTCTCCAGGGCTCTCAGAACGTACCGAGCAGAAGGCCGCCTTGATGGCTTTGAATTCAGGCATGTCTTCGCGACGATTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_353#0 --CCCTTAATTTATG-ATAAGGGAAAAAAAAGGGTAAATGTTATGCGCACAATGAGAACA 57 consensus_353#1 ACCTCGTGCCGGATCTGTTACGGGCAAAAAAGGGTAACTGTTATGCGCACAATGAGACCG 60 * * * ** * * ** ************ ******************* * consensus_353#0 TCAAGTACCATGCGTTCAGTAAACCAAAACAATTCTCCAACATATGAAGGAAAAAAAA-- 115 consensus_353#1 TTCAGTCCCCTGCTTTCAGTAAACCACAACATTTTTCCAGCATCTGAAGGAAAAAAAACA 120 * *** ** *** ************ **** ** **** *** ************** consensus_353#0 AGAGAAATAAAAACCCCGAAAACTT-CTCTATATGCACAATTCTCACTTCGAGACCCCGA 174 consensus_353#1 GGAGAAATAAAAACCCCGCAAACTTGCTCTATATGCACAATTCTCGCTTCGAGACCCCGA 180 ***************** ****** ******************* ************** consensus_353#0 ATCATGCTCATCAGAAGATCAGATTATACACAGGTATGAATGAATCACAAATTCTTCGAA 234 consensus_353#1 ATCATGCTCATCAGAAGATCAGCTTATACCCAGGTATGAATGAATCACAAATTCTTCGAA 240 ********************** ****** ****************************** consensus_353#0 AGAATCGGTGTAATTTCAGTTCTACACGACAACATTCTCCTCGAACCCTTCTGGCTCCGG 294 consensus_353#1 AGAATCGGTGTAATTTCAGTTCTACACGGCAACATTCTCCTCGAACCCTTCTGGCTCCGG 300 **************************** ******************************* consensus_353#0 AGCAATCTCCCTGGAAGCCCTCTTGAAGGAGAAGGAAGTCTCTCCTCCGCTTCCATGTG- 353 consensus_353#1 AGCAATCTCCCTGGAAGCCCTCTTGAAGGAGAAGGAAGTCTCTCCTCCGCTTCCATGTGG 360 *********************************************************** consensus_353#0 ATCTAGTTGAATGTTTCCTGTCAAGCATTTGCCCTGACGACGACGCGGTTTCAAGGCTCT 413 consensus_353#1 ATCTAGTTGAATGTTTCCTGTCAAGCATTTGCCCTGACGACGACGCGGTTTCAAGGCTCT 420 ************************************************************ consensus_353#0 GGTACCGGTTTCCTTGAAGGAAAGCAGACTGCCAGGAGCTCCGGGATGATGAGCTCCTGA 473 consensus_353#1 GGTACCGGTTTCCTTGAAGGAAAGCAGACTGCCAGGAGCTCCGGGATGATGAGCTCCTGA 480 ************************************************************ consensus_353#0 GTCTTGCTGAATTGGAGCGGGACGCCATTCGCAGAATCTTTAGCGGGTTCTCCAGGGCTC 533 consensus_353#1 GTCTTGCTGAATTGGAGCGGGACGCCATTCGCAGAATCTTTAGCGGGTTCTCCAGGGCTC 540 ************************************************************ consensus_353#0 TCAGGACGTACCGAGCAGAAGGCCGCCTTGATGGCTTTGAATTCAGGCATGTCTTCGCGA 593 consensus_353#1 TCAGAACGTACCGAGCAGAAGGCCGCCTTGATGGCTTTGAATTCAGGCATGTCTTCGCGA 600 **** ******************************************************* consensus_353#0 CGATTGCCATGGCCCACACCTCTTCGAGATGATCCTCATCGACAATAAGCAAAGGATCGA 653 consensus_353#1 CGATTG------------------------------------------------------ 606 ****** consensus_353#0 TGATCCTAGAAATGCTCTCCTTGTCGTTCATGTCGATGCGGTTTAGTGTGTTTGTCATCC 713 consensus_353#1 ------------------------------------------------------------ consensus_353#0 ACTCTTCGGAGGCAGCATCGTTTGATCCACTTACACCAAAGTTGCCTGTTACTAGTTCAA 773 consensus_353#1 ------------------------------------------------------------ consensus_353#0 GCATCACCTTTCCAAGCAGTAAACATCATAAGAACAAGTTGCTG 817 consensus_353#1 -------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||