These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_391#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 693 fasta sequence [TTTTTTTTTTGACCGTAGTTGAACGAATGGTGTAAGCAACACTCTTTCAGTCTCAGATAATACAAAAAATTCCAGTTGATGGATACATGGAAACTAGGAAGCAGGTCAGATTTCCTACAGGAGAGTGCTGCTTATAGGTTCACTGTTCAACCAGAATGATCTAAGTTTCATCTCGGGAATCCAAAAATTCAGATTTTCAATTGTTGAATCAGTATATCTTGTTCTGCTCCAACAGGAATATGACTGTTCTGTTTAATCAACAATGAAACACCTTTGTCTATTGAAATCCTCGTATCCAACATCAACAAGACAGAGCCCATCTGGAGGCGCTGGGGGAGCAGTAGCTCGCCTGCAAGTGGCTTCCATCAGGTTCAGCAAAGCATCTTCTTCAGCACCAGCAGCTGCCTCCCTTATGGCGGTCGCAACAAGAACCCTAACCATCTTGCGCAGAAACCTGTTTGCGACTAGCTCAATGCATATGGCCCTGGTGGTGCCTTCTTCACAATTCTCATCAGCAGTGTGTAGTTTGGCCACTGCAGCTCGAGAATGGAACATGAAACACTCTGTAGGTGGACCAACACTTCGTGAAGCTTGTGTATCACGTGCAAACATCTTGTAAGATAGTGATTTTCCTTCCAGTTGTCTAATGATTTTGTCAACCTTACCCACATCANAGCTTTGAGGTTTTATGTT] [+] EMBL CA760217 [TTTTTTTTTTGACCGTAGTTGAACGAATGGTGTAAGCAACACTCTTTCAGTCTCAGATAATACAAAAAATTCCAGTTGATGGATACATGGAAACTAGGAAGCAGGTCAGATTTCCTACAGGAGAGTGCTGCTTATAGGTTCACTGTTCAACCAGAATGATCTAAGTTTCATCTCGGGAATCCAAAAATTCAGATTTTCAATTGTTGAATCAGTATATCTTGTTCTGCTCCAACAGGAATATGACTGTTCTGTTTAATCAACAATGAAACACCTTTGTCTATTGAAATCCTCGTATCCAACATCAACAAGACAGAGCCCATCTGGAGGCGCTGGGGGAGCAGTAGCTCGCCTGCAAGTGGCTTCCATCAGGTTCAGCAAAGCATCTTCTTCAGCACCAGCAGCTGCCTCCCTTATGGCGGTCGCAACAAGAACCCTAACCATCTTGCGCAGAAACCTGTTTGCGACTAGCTCAATGCATATGGCCCTGGTGGTGCCTTCTTCACAATTCTCATCAGCAGTGTGTAGTTTGGCCACTGCAGCTCGAGAATGGAACATGAAACACTCTGTAGGTGGACCAACACTTCGTGAAGCTTGTGTATCACGTGCAAACATCTTGTAAGATAGTGATTTTCCTTCCAGTTGTCTAATGATTTTGTCAACCTTACCCACATCANAGCTTTGAGGTTTTATGTT] consensusID : consensus_391#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 687 fasta sequence [TTTTTTTTTTTTTTTTCATCTCGGGAATCCAAAAATTCAAATTTTCAATTGTTGAATCAGTATATCTTGTTCTGCTCCAACAGGAATATGACTGTTCTGTTTAATCAACAATGAAACACCTTTGTCTATTGAAATCCTCGTATCCAACATCAACAAGACAGAGCCCATCTGGAGGCGCTGGGGGAGCAGTAGCTCGCCTGCAAGTGGCTTCCATCAGGTTCAGCAAAGCATCTTCTTCAGCACCAGCAGCTGCCTCCCTTATGGCGGTCGCAACAAGAACCCTAACCATCTTGCGCAAAAACCTGTTTGCGACTAGCTCAATGCATATGGCCCTGGGGGGGCCTTCTTCACAATTCTGCAAAAATTGGGAAAACGGAATGGAACATGGTATTACCAGTTGAAATGATATATGTGCATGCAAAATGATAATTGAAAAAAAAAAAACCAGATAAGGGAGTTATCAATTGCATAGCCATGATGCTAAATTTTATGAGTCCACATAATATATTTAGTTTTGATATCAGCACCTCAAAACTATATAATCCACAATTGCATACACGTCATAATGCCATACTCAAGCTATGCCAATGTCCAGCAACTAAGGTTAAGGTTACAAACGCGATACCACAAAATAATACTGTTACTTTTATGTAGAGATTAGCAGTACTAGAATGGAAGCACTGGGAA] [+] EMBL CA760216 [TTTTTTTTTTTTTTTTCATCTCGGGAATCCAAAAATTCAAATTTTCAATTGTTGAATCAGTATATCTTGTTCTGCTCCAACAGGAATATGACTGTTCTGTTTAATCAACAATGAAACACCTTTGTCTATTGAAATCCTCGTATCCAACATCAACAAGACAGAGCCCATCTGGAGGCGCTGGGGGAGCAGTAGCTCGCCTGCAAGTGGCTTCCATCAGGTTCAGCAAAGCATCTTCTTCAGCACCAGCAGCTGCCTCCCTTATGGCGGTCGCAACAAGAACCCTAACCATCTTGCGCAAAAACCTGTTTGCGACTAGCTCAATGCATATGGCCCTGGGGGGGCCTTCTTCACAATTCTGCAAAAATTGGGAAAACGGAATGGAACATGGTATTACCAGTTGAAATGATATATGTGCATGCAAAATGATAATTGAAAAAAAAAAAACCAGATAAGGGAGTTATCAATTGCATAGCCATGATGCTAAATTTTATGAGTCCACATAATATATTTAGTTTTGATATCAGCACCTCAAAACTATATAATCCACAATTGCATACACGTCATAATGCCATACTCAAGCTATGCCAATGTCCAGCAACTAAGGTTAAGGTTACAAACGCGATACCACAAAATAATACTGTTACTTTTATGTAGAGATTAGCAGTACTAGAATGGAAGCACTGGGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_391#0 TTTTTTTTTTGACCGTAGTTGAACGAATGGTGTAAGCAACACTCTTTCAGTCTCAGATAA 60 consensus_391#1 ------------------------------------------------------------ consensus_391#0 TACAAAAAATTCCAGTTGATGGATACATGGAAACTAGGAAGCAGGTCAGATTTCCTACAG 120 consensus_391#1 ------------------------------------------------------------ consensus_391#0 GAGAGTGCTGCTTATAGGTTCACTGTTCAACCAGAATGATCTAAGTTTCATCTCGGGAAT 180 consensus_391#1 --------------------------------TTTTTTTTTTTTTTTTCATCTCGGGAAT 28 * * * *************** consensus_391#0 CCAAAAATTCAGATTTTCAATTGTTGAATCAGTATATCTTGTTCTGCTCCAACAGGAATA 240 consensus_391#1 CCAAAAATTCAAATTTTCAATTGTTGAATCAGTATATCTTGTTCTGCTCCAACAGGAATA 88 *********** ************************************************ consensus_391#0 TGACTGTTCTGTTTAATCAACAATGAAACACCTTTGTCTATTGAAATCCTCGTATCCAAC 300 consensus_391#1 TGACTGTTCTGTTTAATCAACAATGAAACACCTTTGTCTATTGAAATCCTCGTATCCAAC 148 ************************************************************ consensus_391#0 ATCAACAAGACAGAGCCCATCTGGAGGCGCTGGGGGAGCAGTAGCTCGCCTGCAAGTGGC 360 consensus_391#1 ATCAACAAGACAGAGCCCATCTGGAGGCGCTGGGGGAGCAGTAGCTCGCCTGCAAGTGGC 208 ************************************************************ consensus_391#0 TTCCATCAGGTTCAGCAAAGCATCTTCTTCAGCACCAGCAGCTGCCTCCCTTATGGCGGT 420 consensus_391#1 TTCCATCAGGTTCAGCAAAGCATCTTCTTCAGCACCAGCAGCTGCCTCCCTTATGGCGGT 268 ************************************************************ consensus_391#0 CGCAACAAGAACCCTAACCATCTTGCGCAGAAACCTGTTTGCGACTAGCTCAATGCATAT 480 consensus_391#1 CGCAACAAGAACCCTAACCATCTTGCGCAAAAACCTGTTTGCGACTAGCTCAATGCATAT 328 ***************************** ****************************** consensus_391#0 GGCCCTGGTGGTGCCTTCTTCACAATTCTCATCAGCAGTGTGTAGTTTGGCCACTGCAGC 540 consensus_391#1 GGCCCTGGGGGGGCCTTCTTCACAATTCTG--CAAAAATTGGGAAAACGG--AATGGAAC 384 ******** ** ***************** ** * * * * ** * ** * * consensus_391#0 TCGAGAATGGAACATGAAACACTCTGT----AGGTGGACCAACACTTCGTGAAGCTTGTG 596 consensus_391#1 ATGGTATTACCAGTTGAAATGATATATGTGCATGCAAAATGATAATTGAAAAAAAAAAAA 444 * * * * ***** * * * * * * * * ** ** consensus_391#0 TATCACGTGCAAAC-ATC--TTGTAAGATAGTGATTTTCC-TTCCAGTTGTCTA-ATGAT 651 consensus_391#1 CCAGATAAGGGAGTTATCAATTGCATAGCCATGATGCTAAATTTTATGAGTCCACATAAT 504 * * * *** *** * **** * ** * *** * ** ** consensus_391#0 TTTGTCAACCTTACCCACATCANAGCTTTGAGGTTTTATGTT------------------ 693 consensus_391#1 ATATTTAGTTTTG---ATATCAGCACCTCAAAACTATATAATCCACAATTGCATACACGT 561 * * * ** * **** * * * * *** * consensus_391#0 ------------------------------------------------------------ consensus_391#1 CATAATGCCATACTCAAGCTATGCCAATGTCCAGCAACTAAGGTTAAGGTTACAAACGCG 621 consensus_391#0 ------------------------------------------------------------ consensus_391#1 ATACCACAAAATAATACTGTTACTTTTATGTAGAGATTAGCAGTACTAGAATGGAAGCAC 681 consensus_391#0 ------ consensus_391#1 TGGGAA 687 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||