These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4101#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 613 fasta sequence [CCACCGCGATTCNCGAGGGAGAATAACGGTTCCNTCCGGGCCAAACGCAACCTTCGCTTGGNTTTTGGCCNGGGCCCGAACCGCCGAGGGTNGGGGGNGNTCCGATTNGAAAAGTCGGGTCCTGTTGACNGGGNNAACNTCCGCNNCGCCGCCGNAGCAAAACCGGGGGGGAAGAA-GACAAGACGCCCACCACNACAATGGCTTNAAAGCCGCNGCAACCCCCCGGCGGGCGGCGGANGAGGCGGCGGNTTTTTCGTTGCTGCTGCAAGAGCTGGAGGAGTTGATCGGCGCGTCGGCCTTCCCGAACATTGGAGAGCTGGGGGANGATCTGATTCTGACCTCGATTTCTCNTCTCTTTTTTTTTCTCCCATAAAATTTCAGGG--TTTTTTTTGGTCCGTCCGATGCGAGGATCGGACGGCTGCGGGTTGTCCTCCCCTTAGCCAAGCTGATGATGATGTCGTAGCCAAGTAGCGTAGCACTAGAAACCAAATCAGCCTCTCTCTCTCGCTCTCTTTTTCTCATGGGGTAATTATAACTCCTTTCTGTTNGTNGCTCATCATNGCCTTCATTTAGTTAACGAGTTTAATGATATGCTTAATTAGTTNTAAAAAAA] [+] EMBL AA753936 [CCACCGCGATTCNCGAGGGAGAATAACGGTTCCNTCCGGGCCAAACGCAACCTTCGCTTGGNTTTTGGCCNGGGCCCGAACCGCCGAGGGTNGGGGGNGNTCCGATTNGAAAAGTCGGGTCCTGTTGACNGGGNNAACNTCCGCNNCGCCGCCGNAGCAAAACCGGGGGGGAAGAA GACAAGACGCCCACCACNACAATGGCTTNAAAGCCGCNGCAACCCCCCGGCGGGCGGCGGANGAGGCGGCGGNTTTTTCGTTGCTGCTGCAAGAGCTGGAGGAGTTGATCGGCGCGTCGGCCTTCCCGAACATTGGAGAGCTGGGGGANGATCTGATTCTGACCTCGATTTCTCNTCTCTTTTTTTTTCTCCCATAAAATTTCAGGG TTTTTTTTGGTCCGTCCGATGCGAGGATCGGACGGCTGCGGGTTGTCCTCCCCTTAGCCAAGCTGATGATGATGTCGTAGCCAAGTAGCGTAGCACTAGAAACCAAATCAGCCTCTCTCTCTCGCTCTCTTTTTCTCATGGGGTAATTATAACTCCTTTCTGTTNGTNGCTCATCATNGCCTTCATTTAGTTAACGAGTTTAATGATATGCTTAATTAGTTNTAAAAAAA] [+] EMBL AU172536 [ cGGAAGAACGACAAGACGCCCACCACCACAATGGCCTCCACGCCGCCGC AGCCGCCGGC GGCGGCGGACGAGGCGGCGGCGTCGTCGCTGCTGCTGCAAGAGCTGGAGGAGTTGATCGGCGCGTCGGCCTTCCCG ACATTGGAGAGCTGGGGGATGATCTGATTCTGACCTCGATTTCTCCTCTCTTTTTTTTTCTCCCATAAAATTTCAGGGTTTTTTTTTTGGTCCGTCCGATGCGAGGATCGGACGGCTGCGGGTTGTCCTCCCCTTAGCCAAGCTGATGATGATGTCGTAGCCAAGTAGCGTAGCACTAGAAACCAAATCAGCCTCTCTCTCTCGCTCTCTTTTTCTCATGGTGTAATTATTACTCCTTTCTGTTTGTTGCTCATCATTGCCTTCATTTAGTTAACGAGTTTAATGATATGCTTAATTAGTTCTAAAAA ] consensusID : consensus_4101#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 309 fasta sequence [GAGTGAGCGAGTGACGACTACTGGACGTCGGAAATATATATGGTAATGGGAATGGGTAGGCGAGCCGCCGCAGCCACAGCCGGGGCGGAAGAACGACAAGACGTCCACCACCACAATGGCCTCCACGCCGCCGCAGCCGCCGGCGGGCGNAACGGAGGCGGCGGCGTCGTCGCTGCTGCTGCAAGAGCTGGAGGAGTTGATCGGCGCGTCGGCCTTCCCGACATTGGAGANCTGGGGGATGATCTGATTCTTGACCTCGATTTCTCCTCTCTTTTTTTTTCTCCCATAAAATTTCAGGGGTTTTTTTTN] [+] EMBL AU069682 [GAGTGAGCGAGTGACGACTACTGGACGTCGGAAATATATATGGTAATGGGAATGGGTAGGCGAGCCGCCGCAGCCACAGCCGGGGCGGAAGAACGACAAGACGTCCACCACCACAATGGCCTCCACGCCGCCGCAGCCGCCGGCGGGCGNAACGGAGGCGGCGGCGTCGTCGCTGCTGCTGCAAGAGCTGGAGGAGTTGATCGGCGCGTCGGCCTTCCCGACATTGGAGANCTGGGGGATGATCTGATTCTTGACCTCGATTTCTCCTCTCTTTTTTTTTCTCCCATAAAATTTCAGGGGTTTTTTTTN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4101#0 CCACCGCGATTCNCGAGGGAGAATAACGGTTCCNTCCGGGCCAAACGCAACCTTCGCTTG 60 consensus_4101#1 ------------------------------------------------------------ consensus_4101#0 GNTTTTGGCCNGGGCCCGAACCGCCGAGGGTNGGGGGNGNTCCGATTNGAAAAGTCGGGT 120 consensus_4101#1 -----------------GAGTGAGCGAGTGACGACTACTGGACG-TCGGAAATATATA-- 40 ** **** * * ** * **** * consensus_4101#0 CCTGTTGACNGGGNNAACNTCCGCNNCGCCGCCGNAGCAA-AACCGGGGGGGAAGAA-GA 178 consensus_4101#1 --TGGTAATGGGAATGG-GTAGGCGA-GCCGCCGCAGCCACAGCCGGGGCGGAAGAACGA 96 ** * * ** * ** ******* *** * * ****** ******* ** consensus_4101#0 CAAGACGCCCACCACNACAATGGCTTNAAAGCCGCNGCAACCCCCCGGCGGGCGGCGGAN 238 consensus_4101#1 CAAGACGTCCACCACCACAATGGCCTCCACGCCGCCGCAGCCGCC-GGCGGGCGN-AACG 154 ******* ******* ******** * * ***** *** ** ** ******** consensus_4101#0 GAGGCGGCGGNTTTTTCGTTGCTGCTGCAAGAGCTGGAGGAGTTGATCGGCGCGTCGGCC 298 consensus_4101#1 GAGGCGGCGGCGTCGTCGCTGCTGCTGCAAGAGCTGGAGGAGTTGATCGGCGCGTCGGCC 214 ********** * *** ***************************************** consensus_4101#0 TTCCCGAACATTGGAGAGCTGGGGGANGATCTGATTCT-GACCTCGATTTCTCNTCTCTT 357 consensus_4101#1 TTCCCGA-CATTGGAGANCTGGGGGATGATCTGATTCTTGACCTCGATTTCTCCTCTCTT 273 ******* ********* ******** *********** ************** ****** consensus_4101#0 TTTTTTTCTCCCATAAAATTTCAGGGTTTTTTTTGGTCCGTCCGATGCGAGGATCGGACG 417 consensus_4101#1 TTTTTTTCTCCCATAAAATTTCAGGGGTTTTTTTTN------------------------ 309 ************************** ******* consensus_4101#0 GCTGCGGGTTGTCCTCCCCTTAGCCAAGCTGATGATGATGTCGTAGCCAAGTAGCGTAGC 477 consensus_4101#1 ------------------------------------------------------------ consensus_4101#0 ACTAGAAACCAAATCAGCCTCTCTCTCTCGCTCTCTTTTTCTCATGGGGTAATTATAACT 537 consensus_4101#1 ------------------------------------------------------------ consensus_4101#0 CCTTTCTGTTNGTNGCTCATCATNGCCTTCATTTAGTTAACGAGTTTAATGATATGCTTA 597 consensus_4101#1 ------------------------------------------------------------ consensus_4101#0 ATTAGTTNTAAAAAAA 613 consensus_4101#1 ---------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||