These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4238#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1611 fasta sequence [AGAAACTTTCCTTTCTTTATAAACGGCTGAAGCAGCGGGAGGCCGAGGGGGCTCGCCCACACGCGCGGCCGGAGACCCCGGAATCCCAATCGGATCGCGAGGAAAGCCACTGAGAGAGTGTGGATGGCTCCCTCCTTGCTCGCCTCGGCGGCGAGCCAAATCCTCGCCGCTCCCCGCCGGGGAGGCCGCGGCCGGCGGCGTCTGGTCATCGCCTGCTCCGCCGGTGCCGGTGCTCCTCCCAAGCTGGTGACTTTCCTCGGGAAGGGCGGCTCCGGGAAGACCACCGCGGCCGCCGTCGCCGCTCAGTATTATGCAAGTGAAGGCTTGAAGACATGCTTGGTCATACAGTCCCAAGATCCCACCGCAGAGCAATTGATGGGTTGTAAGATCGGTAACTCGCTGACCGAGTGCGCTGCCAATCTTTCCACCATGAAGCTGGAGACTAGTAAAATGCTGCTTGAACCCCTTGACCGGCTAAAGAAAGTGGACTCGCAGATCAATCTTACTCAAGGAGTCCTTGAGGCGGTTGTAGGGGAGGAGCTTGGAGTCTTACCCGGAATGGACTCGGTCTGTTCAGTGTTAGCTCTTCAGAAGCTGCTTAACTTCTTTTCAACTCAAAGGAATAGTTCACAAGAGGAATTTGATGTGGTAGTGTATGATTGCAACAATACAGAGGAAATTCTACGGCTAATTGGTGCTACTGAGAGAGCAAGACAGGTCTTACTTGAGGTATGTGAAGGATCTAGCAGAAAAGACTGACATAGGAAGACTGGCTTCTCCTTCCGCGATGAGACTAATATACGATTCTGCAAGGCCAAATGGTAAAACTAGTGAAGGAAGACTGAGTTCAGAGTTATGGAATGATATTGAACAACTTATTCAGAGAATATCGGTTTGGTTTGCCGATCCCTCAAAATTTGCATGCTTCCTCATCATGGACCCTAGAAGATCAATCTCTGTATCTTCTGCATTGCGATACTGGGGATGTACAACTCAAGCTGGTGGAAATATATGTGGAGCATTTGGTTATACCGAACAGCGTTTCGAAATTCACCAAGGAGTTGCAGAGAAGTTTTTGCCGATGACTTTCTCGTTTCTGCCATTTCTGCCAACTGATTCTTCAGCAGATTGGAGCAGAGTGCTGAATTCTTTGAGCCAAAATGCAAAAGATTTACTGAGGAATACAAGCAACAAAGTATACCCTTCAGTTAGTTTTGATTCTGTTCAGAAATCGGTGACCCTTTTCATGCCGGGCTTTGATAAGTCTGAAATCAAACTATATCAATATAGAGGTGGATCAGAACTACTGATAGAAGCCGGCGACCAGAGGCGCGTCGTAAAGCTGCCGCCGGCGATGCAGGGCAAAGTTGGTGGCGCCAAGTTCGTCGACAGGAACCTCATTGTTACCATCCGGTAGCAGTGCGGACCAGCAGTTGTGTAAAATCTGTCAGAAGAGACCCAAACTGTTATAATAAATCGGTAAGTTAAGTCTTATTTAGACGTACTGGGTCTGATCGTATGGCAATATTCGTTATTTCTTTGTTGCAAAATGTGTAAAAAGAGCAAGATTTTTGCAGTGTCATTTACAGAAAACGGAATAAATCAGCACCA] [+] EMBL AK106470 [AGAAACTTTCCTTTCTTTATAAACGGCTGAAGCAGCGGGAGGCCGAGGGGGCTCGCCCACACGCGCGGCCGGAGACCCCGGAATCCCAATCGGATCGCGAGGAAAGCCACTGAGAGAGTGTGGATGGCTCCCTCCTTGCTCGCCTCGGCGGCGAGCCAAATCCTCGCCGCTCCCCGCCGGGGAGGCCGCGGCCGGCGGCGTCTGGTCATCGCCTGCTCCGCCGGTGCCGGTGCTCCTCCCAAGCTGGTGACTTTCCTCGGGAAGGGCGGCTCCGGGAAGACCACCGCGGCCGCCGTCGCCGCTCAGTATTATGCAAGTGAAGGCTTGAAGACATGCTTGGTCATACAGTCCCAAGATCCCACCGCAGAGCAATTGATGGGTTGTAAGATCGGTAACTCGCTGACCGAGTGCGCTGCCAATCTTTCCACCATGAAGCTGGAGACTAGTAAAATGCTGCTTGAACCCCTTGACCGGCTAAAGAAAGTGGACTCGCAGATCAATCTTACTCAAGGAGTCCTTGAGGCGGTTGTAGGGGAGGAGCTTGGAGTCTTACCCGGAATGGACTCGGTCTGTTCAGTGTTAGCTCTTCAGAAGCTGCTTAACTTCTTTTCAACTCAAAGGAATAGTTCACAAGAGGAATTTGATGTGGTAGTGTATGATTGCAACAATACAGAGGAAATTCTACGGCTAATTGGTGCTACTGAGAGAGCAAGACAGGTCTTACTTGAGGTATGTGAAGGATCTAGCAGAAAAGACTGACATAGGAAGACTGGCTTCTCCTTCCGCGATGAGACTAATATACGATTCTGCAAGGCCAAATGGTAAAACTAGTGAAGGAAGACTGAGTTCAGAGTTATGGAATGATATTGAACAACTTATTCAGAGAATATCGGTTTGGTTTGCCGATCCCTCAAAATTTGCATGCTTCCTCATCATGGACCCTAGAAGATCAATCTCTGTATCTTCTGCATTGCGATACTGGGGATGTACAACTCAAGCTGGTGGAAATATATGTGGAGCATTTGGTTATACCGAACAGCGTTTCGAAATTCACCAAGGAGTTGCAGAGAAGTTTTTGCCGATGACTTTCTCGTTTCTGCCATTTCTGCCAACTGATTCTTCAGCAGATTGGAGCAGAGTGCTGAATTCTTTGAGCCAAAATGCAAAAGATTTACTGAGGAATACAAGCAACAAAGTATACCCTTCAGTTAGTTTTGATTCTGTTCAGAAATCGGTGACCCTTTTCATGCCGGGCTTTGATAAGTCTGAAATCAAACTATATCAATATAGAGGTGGATCAGAACTACTGATAGAAGCCGGCGACCAGAGGCGCGTCGTAAAGCTGCCGCCGGCGATGCAGGGCAAAGTTGGTGGCGCCAAGTTCGTCGACAGGAACCTCATTGTTACCATCCGGTAGCAGTGCGGACCAGCAGTTGTGTAAAATCTGTCAGAAGAGACCCAAACTGTTATAATAAATCGGTAAGTTAAGTCTTATTTAGACGTACTGGGTCTGATCGTATGGCAATATTCGTTATTTCTTTGTTGCAAAATGTGTAAAAAGAGCAAGATTTTTGCAGTGTCATTTACAGAAAACGGAATAAATCAGCACCA] [+] EMBL CB682048 [ CAACTCATTCAGAGAATATCGGTTTGGTTTGCCGATCCCTCAAAATTTGCATGCTTCCTCATCATGGACCCTAGAAGATCAATCTCTGTATCTTCTGCATTGCGATACTGGGGATGTACAACTCAAGCTGGTGGAAATATATGTGGAGCATTTGGTTATACCGAACAGCGTTTCGAAATTCACCAAGGAGTTGCAGAGAAGTTTTTGCCGATGACTTTCTCGTTTCTGCCATTTCTGCCAACTGATTCTTCAGCAGATTGGAGCAGAGTGCTGAATTCTTTGAGCCAAAATGCAAAAGATTTACTGAGGAATACAAGCAACAAAGTATACCCTTCAGTTAGTTTTGATTCTGTTCAGAAATCGGTGACCCTTTTCATGCCGGGCTTTGATAAGTCTGAAATCAAACTATATCAATATAGAGGTGGATCAGAACTACTGATAGAAGCCGGCGACCAGAGGCGCGTCGTAAAGCTGCCGCCGGCGATGCAGGGCAAAGTTGGTGGCGCCAAGTTCGTCGACAGGAACCTCATTGTTACCATCCGGTAGCAGTGCGGACCAGCAGTTGTGTAAAATCTGTCAGAAGAGACCCAAACTGTTATAATAAATCGGTAAGTTAAGTCTTATTTAGACGTACTGGGTCTGATCGTATGGCAATATTCGTTATTTCTTTGTTGCAAAATGTGTAAAAAGAGCAAGATTTTTGCAGTGTCATTTACAGAAAACGGAATAAATCAGCACCA] consensusID : consensus_4238#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 760 fasta sequence [CGGCACGAGGGATATTGAACAACTTATTCAGAGAATATCGGTTTGGTTTGCCGATCCCTCAAAATTTGCATGCTTCCTCATCATGGACCCTAGAAGATCAATCTCTGTATCTTCTGCATTGCGATACTGGGGATGTACAACTCAAGCTGGTGGAAATATATGTGGAGCATTTGGTTATACCGAACAGCGTTTCGAAATTCACCAAGGAGTTGCAGAGAAGTTTTTGCCGATGACTTTCTCGTTTCTGCCATTTCTGCCAACTGATTCTTCAGCAGATTGGAGCAGAGTGCTGAATTCTTTGAGCCAAAATGCAAAAGATTTACTGAGGAATACAAGCAACAAAGTATACCCTTCAGTTAGTTTTGATTCTGTTCAGAAATCGGTGACCCTTTTCATGCCGGGCTTTGATAAGTCTGAAATCAAACTATATCAATATAGAGGTGGATCAGAACTACTGATAGAAGCCGGCGACCAGAGGCGCGTCGTAAAGCTGCCGCCGGCGATGCAGGGCAAAGTTGGTGGCGCCAAGTTCGTCGACAGGAACCTCATTGTTACCATCCGGTAGCAGTGCGGACCAGCAGTTGTGTAAAATCTGTCAGAAGAGACCCAAACTGTTATAATAAATCGGTAAGTTAAGTCTTATTTAGACGTACTGGGTCTGATCGTATGGCAATATTCGTTATTTCTTTGTTGCAAAATGTGTAAAAAGAGCAAGATTTTTGCAGTGTCATTTTCAGAAAGCGGAATAAATCAGCACCAA] [-] EMBL CB682049 [CGGCACGAGGGATATTGAACAACTTATTCAGAGAATATCGGTTTGGTTTGCCGATCCCTCAAAATTTGCATGCTTCCTCATCATGGACCCTAGAAGATCAATCTCTGTATCTTCTGCATTGCGATACTGGGGATGTACAACTCAAGCTGGTGGAAATATATGTGGAGCATTTGGTTATACCGAACAGCGTTTCGAAATTCACCAAGGAGTTGCAGAGAAGTTTTTGCCGATGACTTTCTCGTTTCTGCCATTTCTGCCAACTGATTCTTCAGCAGATTGGAGCAGAGTGCTGAATTCTTTGAGCCAAAATGCAAAAGATTTACTGAGGAATACAAGCAACAAAGTATACCCTTCAGTTAGTTTTGATTCTGTTCAGAAATCGGTGACCCTTTTCATGCCGGGCTTTGATAAGTCTGAAATCAAACTATATCAATATAGAGGTGGATCAGAACTACTGATAGAAGCCGGCGACCAGAGGCGCGTCGTAAAGCTGCCGCCGGCGATGCAGGGCAAAGTTGGTGGCGCCAAGTTCGTCGACAGGAACCTCATTGTTACCATCCGGTAGCAGTGCGGACCAGCAGTTGTGTAAAATCTGTCAGAAGAGACCCAAACTGTTATAATAAATCGGTAAGTTAAGTCTTATTTAGACGTACTGGGTCTGATCGTATGGCAATATTCGTTATTTCTTTGTTGCAAAATGTGTAAAAAGAGCAAGATTTTTGCAGTGTCATTTTCAGAAAGCGGAATAAATCAGCACCAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4238#0 AGAAACTTTCCTTTCTTTATAAACGGCTGAAGCAGCGGGAGGCCGAGGGGGCTCGCCCAC 60 consensus_4238#1 ------------------------------------------------------------ consensus_4238#0 ACGCGCGGCCGGAGACCCCGGAATCCCAATCGGATCGCGAGGAAAGCCACTGAGAGAGTG 120 consensus_4238#1 ------------------------------------------------------------ consensus_4238#0 TGGATGGCTCCCTCCTTGCTCGCCTCGGCGGCGAGCCAAATCCTCGCCGCTCCCCGCCGG 180 consensus_4238#1 ------------------------------------------------------------ consensus_4238#0 GGAGGCCGCGGCCGGCGGCGTCTGGTCATCGCCTGCTCCGCCGGTGCCGGTGCTCCTCCC 240 consensus_4238#1 ------------------------------------------------------------ consensus_4238#0 AAGCTGGTGACTTTCCTCGGGAAGGGCGGCTCCGGGAAGACCACCGCGGCCGCCGTCGCC 300 consensus_4238#1 ------------------------------------------------------------ consensus_4238#0 GCTCAGTATTATGCAAGTGAAGGCTTGAAGACATGCTTGGTCATACAGTCCCAAGATCCC 360 consensus_4238#1 ------------------------------------------------------------ consensus_4238#0 ACCGCAGAGCAATTGATGGGTTGTAAGATCGGTAACTCGCTGACCGAGTGCGCTGCCAAT 420 consensus_4238#1 ------------------------------------------------------------ consensus_4238#0 CTTTCCACCATGAAGCTGGAGACTAGTAAAATGCTGCTTGAACCCCTTGACCGGCTAAAG 480 consensus_4238#1 ------------------------------------------------------------ consensus_4238#0 AAAGTGGACTCGCAGATCAATCTTACTCAAGGAGTCCTTGAGGCGGTTGTAGGGGAGGAG 540 consensus_4238#1 ------------------------------------------------------------ consensus_4238#0 CTTGGAGTCTTACCCGGAATGGACTCGGTCTGTTCAGTGTTAGCTCTTCAGAAGCTGCTT 600 consensus_4238#1 ------------------------------------------------------------ consensus_4238#0 AACTTCTTTTCAACTCAAAGGAATAGTTCACAAGAGGAATTTGATGTGGTAGTGTATGAT 660 consensus_4238#1 ------------------------------------------------------------ consensus_4238#0 TGCAACAATACAGAGGAAATTCTACGGCTAATTGGTGCTACTGAGAGAGCAAGACAGGTC 720 consensus_4238#1 ------------------------------------------------------------ consensus_4238#0 TTACTTGAGGTATGTGAAGGATCTAGCAGAAAAGACTGACATAGGAAGACTGGCTTCTCC 780 consensus_4238#1 ------------------------------------------------------------ consensus_4238#0 TTCCGCGATGAGACTAATATACGATTCTGCAAGGCCAAATGGTAAAACTAGTGAAGGAAG 840 consensus_4238#1 ------------------------------------------------------------ consensus_4238#0 ACTGAGTTCAGAGTTATGGAATGATATTGAACAACTTATTCAGAGAATATCGGTTTGGTT 900 consensus_4238#1 -----------CGGCACGAGG-GATATTGAACAACTTATTCAGAGAATATCGGTTTGGTT 48 * * * ************************************** consensus_4238#0 TGCCGATCCCTCAAAATTTGCATGCTTCCTCATCATGGACCCTAGAAGATCAATCTCTGT 960 consensus_4238#1 TGCCGATCCCTCAAAATTTGCATGCTTCCTCATCATGGACCCTAGAAGATCAATCTCTGT 108 ************************************************************ consensus_4238#0 ATCTTCTGCATTGCGATACTGGGGATGTACAACTCAAGCTGGTGGAAATATATGTGGAGC 1020 consensus_4238#1 ATCTTCTGCATTGCGATACTGGGGATGTACAACTCAAGCTGGTGGAAATATATGTGGAGC 168 ************************************************************ consensus_4238#0 ATTTGGTTATACCGAACAGCGTTTCGAAATTCACCAAGGAGTTGCAGAGAAGTTTTTGCC 1080 consensus_4238#1 ATTTGGTTATACCGAACAGCGTTTCGAAATTCACCAAGGAGTTGCAGAGAAGTTTTTGCC 228 ************************************************************ consensus_4238#0 GATGACTTTCTCGTTTCTGCCATTTCTGCCAACTGATTCTTCAGCAGATTGGAGCAGAGT 1140 consensus_4238#1 GATGACTTTCTCGTTTCTGCCATTTCTGCCAACTGATTCTTCAGCAGATTGGAGCAGAGT 288 ************************************************************ consensus_4238#0 GCTGAATTCTTTGAGCCAAAATGCAAAAGATTTACTGAGGAATACAAGCAACAAAGTATA 1200 consensus_4238#1 GCTGAATTCTTTGAGCCAAAATGCAAAAGATTTACTGAGGAATACAAGCAACAAAGTATA 348 ************************************************************ consensus_4238#0 CCCTTCAGTTAGTTTTGATTCTGTTCAGAAATCGGTGACCCTTTTCATGCCGGGCTTTGA 1260 consensus_4238#1 CCCTTCAGTTAGTTTTGATTCTGTTCAGAAATCGGTGACCCTTTTCATGCCGGGCTTTGA 408 ************************************************************ consensus_4238#0 TAAGTCTGAAATCAAACTATATCAATATAGAGGTGGATCAGAACTACTGATAGAAGCCGG 1320 consensus_4238#1 TAAGTCTGAAATCAAACTATATCAATATAGAGGTGGATCAGAACTACTGATAGAAGCCGG 468 ************************************************************ consensus_4238#0 CGACCAGAGGCGCGTCGTAAAGCTGCCGCCGGCGATGCAGGGCAAAGTTGGTGGCGCCAA 1380 consensus_4238#1 CGACCAGAGGCGCGTCGTAAAGCTGCCGCCGGCGATGCAGGGCAAAGTTGGTGGCGCCAA 528 ************************************************************ consensus_4238#0 GTTCGTCGACAGGAACCTCATTGTTACCATCCGGTAGCAGTGCGGACCAGCAGTTGTGTA 1440 consensus_4238#1 GTTCGTCGACAGGAACCTCATTGTTACCATCCGGTAGCAGTGCGGACCAGCAGTTGTGTA 588 ************************************************************ consensus_4238#0 AAATCTGTCAGAAGAGACCCAAACTGTTATAATAAATCGGTAAGTTAAGTCTTATTTAGA 1500 consensus_4238#1 AAATCTGTCAGAAGAGACCCAAACTGTTATAATAAATCGGTAAGTTAAGTCTTATTTAGA 648 ************************************************************ consensus_4238#0 CGTACTGGGTCTGATCGTATGGCAATATTCGTTATTTCTTTGTTGCAAAATGTGTAAAAA 1560 consensus_4238#1 CGTACTGGGTCTGATCGTATGGCAATATTCGTTATTTCTTTGTTGCAAAATGTGTAAAAA 708 ************************************************************ consensus_4238#0 GAGCAAGATTTTTGCAGTGTCATTTACAGAAAACGGAATAAATCAGCACCA- 1611 consensus_4238#1 GAGCAAGATTTTTGCAGTGTCATTTTCAGAAAGCGGAATAAATCAGCACCAA 760 ************************* ****** ****************** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||