These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_438#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1498 fasta sequence [TATCATATTTGGTATACTAGCCAAGTAAGTCTTCCCTCCTCCAGCTCGTCGCCTTCTTCTCCAGCTTAATTTCTCCGATCGAAATGGCGTCCCCATCGGCGGCGGCGACGGCTAGGAAGCTCGGTAGTCATCTGCCGAGGCTGCGGGACATCATCGACCACGACGACGAGGACGATGACTTCGTCGAGGAGGAGGAAGAGGAGGAGGAGGAGTGGGAGGACATGAGCAAGCGGATGTCTCGCTTGTCCGTCGAGGGCTCCGACGGCGGTGACGCCGACGACGAGGACGACGGGTACCTGCGCGGCGAGGAGGAGGAGGAGGAGGAGGATGGGGACGAGGTGAGATCGGATGTCAACGGTGAGTATGGGGACGGCGGCGGCGGCGGAGGCCAGTGGCATCCGTACGGCGACGACGACCCAAGAAACCCGCAGGCCCCGTCGTCGGCGTCGCTCCCGGGCACGCCGGACCGCGGGGCGCCGGCGCCGTCGCCGTGGATGTACTCGAAGGAGTACGCGAGCGAGACGGAGGCGGCGCGGTGGCCGGGCGGCGACAAGCGGCGGATGCGCCACCGGCGGGAGCGGATGATGCGGGAGGTGTGGCTGGACCGGGCTTGGCAGATGCGGAAGCAGCGGCGGCAGATGCTGATGCAGGGCCAGGGCCTGGGCGCCGACGCGGTGACGGTGGTGGTGAGCGCCGCCGCCGCCGGCGGCGAGTCCCCGGCGCGTGGCGTGGCGATGGACATGGAGGAGATGCGCGCGTGCAGGGACCTCGGCCTCGACCTCCCCTGCGACTGGACCGTGGAGATCCCCTGCTACGCGCTCTCCGGCGTCGACACCGCCAGCAGCGGCGGCAACTCGCCGGCGTCCGGCAGCTGGCGCATCTCCAGCCCCGGTGACGACCCCAAGGACGTGAAGGCGAGGCTCAAGGTGTGGGCGCAGGCGGTGGCGCTCGCGTCGGCCTCCCGGCTGGGTTCTTGATACATTTTTATCGATCGTCGTACGTGCCATCAACCAACGTTTTGTCATGAGATTGAAATAGTGTATTCGAAAAAAAAATTCTCCCCTCTTTCGTCGGCTCGGCTGTCACGTGTCAGTCCTCTTCGTCGAGCAATAAGTACATCGATCAGCGATCAGCTCTTCCTTCAAGCGTGTGTGTTTCCACAGTACATAACTTGAAGTCCAGGAATATGTGTGAAAAAAAAAAAGCATTAGCGGCGTGTGCAATCGCCAAAAAAAAATGGAAGAAAAAAATATAAAAAGAAGTTGTTTCCACAGAGTGGTTAGCTAGGTAGCTATAGCTGTGTAGATTTACAGGTGGCACGTATTGCTTGGTGACACGTGTTTTTCTTTCTTTCTTGTATTTTATTTTATTTTCTTTTCTTTTGCCTCGGCCGGCCGGCAGGGGGTGTGGCCCACCGGGAAAGAGTAAGACAGGAGTGTTCGTGCGTTCCATGATTACAGGAGTGCGGGTGAAGAAAACCTAAGAAAAATTAAAAGAA] [+] EMBL AK106618 [TATCATATTTGGTATACTAGCCAAGTAAGTCTTCCCTCCTCCAGCTCGTCGCCTTCTTCTCCAGCTTAATTTCTCCGATCGAAATGGCGTCCCCATCGGCGGCGGCGACGGCTAGGAAGCTCGGTAGTCATCTGCCGAGGCTGCGGGACATCATCGACCACGACGACGAGGACGATGACTTCGTCGAGGAGGAGGAAGAGGAGGAGGAGGAGTGGGAGGACATGAGCAAGCGGATGTCTCGCTTGTCCGTCGAGGGCTCCGACGGCGGTGACGCCGACGACGAGGACGACGGGTACCTGCGCGGCGAGGAGGAGGAGGAGGAGGAGGATGGGGACGAGGTGAGATCGGATGTCAACGGTGAGTATGGGGACGGCGGCGGCGGCGGAGGCCAGTGGCATCCGTACGGCGACGACGACCCAAGAAACCCGCAGGCCCCGTCGTCGGCGTCGCTCCCGGGCACGCCGGACCGCGGGGCGCCGGCGCCGTCGCCGTGGATGTACTCGAAGGAGTACGCGAGCGAGACGGAGGCGGCGCGGTGGCCGGGCGGCGACAAGCGGCGGATGCGCCACCGGCGGGAGCGGATGATGCGGGAGGTGTGGCTGGACCGGGCTTGGCAGATGCGGAAGCAGCGGCGGCAGATGCTGATGCAGGGCCAGGGCCTGGGCGCCGACGCGGTGACGGTGGTGGTGAGCGCCGCCGCCGCCGGCGGCGAGTCCCCGGCGCGTGGCGTGGCGATGGACATGGAGGAGATGCGCGCGTGCAGGGACCTCGGCCTCGACCTCCCCTGCGACTGGACCGTGGAGATCCCCTGCTACGCGCTCTCCGGCGTCGACACCGCCAGCAGCGGCGGCAACTCGCCGGCGTCCGGCAGCTGGCGCATCTCCAGCCCCGGTGACGACCCCAAGGACGTGAAGGCGAGGCTCAAGGTGTGGGCGCAGGCGGTGGCGCTCGCGTCGGCCTCCCGGCTGGGTTCTTGATACATTTTTATCGATCGTCGTACGTGCCATCAACCAACGTTTTGTCATGAGATTGAAATAGTGTATTCGAAAAAAAAATTCTCCCCTCTTTCGTCGGCTCGGCTGTCACGTGTCAGTCCTCTTCGTCGAGCAATAAGTACATCGATCAGCGATCAGCTCTTCCTTCAAGCGTGTGTGTTTCCACAGTACATAACTTGAAGTCCAGGAATATGTGTGAAAAAAAAAAAGCATTAGCGGCGTGTGCAATCGCCAAAAAAAAATGGAAGAAAAAAATATAAAAAGAAGTTGTTTCCACAGAGTGGTTAGCTAGGTAGCTATAGCTGTGTAGATTTACAGGTGGCACGTATTGCTTGGTGACACGTGTTTTTCTTTCTTTCTTGTATTTTATTTTATTTTCTTTTCTTTTGCCTCGGCCGGCCGGCAGGGGGTGTGGCCCACCGGGAAAGAGTAAGACAGGAGTGTTCGTGCGTTCCATGATTACAGGAGTGCGGGTGAAGAAAACCTAAGAAAAATTAAAAGAA] consensusID : consensus_438#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 390 fasta sequence [CGACCCCAAGGACGTGAAGGCGAGGCTCAAGGTGTGGGCGCAGGCGGTGGCGCTCGCGTCGGCCTCCCGGCTGGGTTCTTGATACATTTTTATCGATCGTCGTACGTGCCATCAACCAACGTTTTGTCATGAGATTGAAATAGTGTATTCGAAAAAAAAAATTCTCCCCTCTTTCGTCGGCTCGGCTGTCACGTGTCAGTCCTCTTCGTCGAGCAATAAGTACATCGATCAGCGATCAGCTCTTCCTTCAAGCGTGTGTGTTTCCACAGTACATAACTTGAAGTCCAGGAATATGTGTGAAAAAAAAAAAGCATTAGCGGCGTGTGCAATCGCCAAAAAAAAATGGAAGAAAAAAATATAAAAAGAAGTTGTTTCAAAAAAAAAAAAAAA] [+] EMBL AU197761 [CGACCCCAAGGACGTGAAGGCGAGGCTCAAGGTGTGGGCGCAGGCGGTGGCGCTCGCGTCGGCCTCCCGGCTGGGTTCTTGATACATTTTTATCGATCGTCGTACGTGCCATCAACCAACGTTTTGTCATGAGATTGAAATAGTGTATTCGAAAAAAAAAATTCTCCCCTCTTTCGTCGGCTCGGCTGTCACGTGTCAGTCCTCTTCGTCGAGCAATAAGTACATCGATCAGCGATCAGCTCTTCCTTCAAGCGTGTGTGTTTCCACAGTACATAACTTGAAGTCCAGGAATATGTGTGAAAAAAAAAAAGCATTAGCGGCGTGTGCAATCGCCAAAAAAAAATGGAAGAAAAAAATATAAAAAGAAGTTGTTTCAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_438#0 TATCATATTTGGTATACTAGCCAAGTAAGTCTTCCCTCCTCCAGCTCGTCGCCTTCTTCT 60 consensus_438#1 ------------------------------------------------------------ consensus_438#0 CCAGCTTAATTTCTCCGATCGAAATGGCGTCCCCATCGGCGGCGGCGACGGCTAGGAAGC 120 consensus_438#1 ------------------------------------------------------------ consensus_438#0 TCGGTAGTCATCTGCCGAGGCTGCGGGACATCATCGACCACGACGACGAGGACGATGACT 180 consensus_438#1 ------------------------------------------------------------ consensus_438#0 TCGTCGAGGAGGAGGAAGAGGAGGAGGAGGAGTGGGAGGACATGAGCAAGCGGATGTCTC 240 consensus_438#1 ------------------------------------------------------------ consensus_438#0 GCTTGTCCGTCGAGGGCTCCGACGGCGGTGACGCCGACGACGAGGACGACGGGTACCTGC 300 consensus_438#1 ------------------------------------------------------------ consensus_438#0 GCGGCGAGGAGGAGGAGGAGGAGGAGGATGGGGACGAGGTGAGATCGGATGTCAACGGTG 360 consensus_438#1 ------------------------------------------------------------ consensus_438#0 AGTATGGGGACGGCGGCGGCGGCGGAGGCCAGTGGCATCCGTACGGCGACGACGACCCAA 420 consensus_438#1 ------------------------------------------------------------ consensus_438#0 GAAACCCGCAGGCCCCGTCGTCGGCGTCGCTCCCGGGCACGCCGGACCGCGGGGCGCCGG 480 consensus_438#1 ------------------------------------------------------------ consensus_438#0 CGCCGTCGCCGTGGATGTACTCGAAGGAGTACGCGAGCGAGACGGAGGCGGCGCGGTGGC 540 consensus_438#1 ------------------------------------------------------------ consensus_438#0 CGGGCGGCGACAAGCGGCGGATGCGCCACCGGCGGGAGCGGATGATGCGGGAGGTGTGGC 600 consensus_438#1 ------------------------------------------------------------ consensus_438#0 TGGACCGGGCTTGGCAGATGCGGAAGCAGCGGCGGCAGATGCTGATGCAGGGCCAGGGCC 660 consensus_438#1 ------------------------------------------------------------ consensus_438#0 TGGGCGCCGACGCGGTGACGGTGGTGGTGAGCGCCGCCGCCGCCGGCGGCGAGTCCCCGG 720 consensus_438#1 ------------------------------------------------------------ consensus_438#0 CGCGTGGCGTGGCGATGGACATGGAGGAGATGCGCGCGTGCAGGGACCTCGGCCTCGACC 780 consensus_438#1 ------------------------------------------------------------ consensus_438#0 TCCCCTGCGACTGGACCGTGGAGATCCCCTGCTACGCGCTCTCCGGCGTCGACACCGCCA 840 consensus_438#1 ------------------------------------------------------------ consensus_438#0 GCAGCGGCGGCAACTCGCCGGCGTCCGGCAGCTGGCGCATCTCCAGCCCCGGTGACGACC 900 consensus_438#1 -------------------------------------------------------CGACC 5 ***** consensus_438#0 CCAAGGACGTGAAGGCGAGGCTCAAGGTGTGGGCGCAGGCGGTGGCGCTCGCGTCGGCCT 960 consensus_438#1 CCAAGGACGTGAAGGCGAGGCTCAAGGTGTGGGCGCAGGCGGTGGCGCTCGCGTCGGCCT 65 ************************************************************ consensus_438#0 CCCGGCTGGGTTCTTGATACATTTTTATCGATCGTCGTACGTGCCATCAACCAACGTTTT 1020 consensus_438#1 CCCGGCTGGGTTCTTGATACATTTTTATCGATCGTCGTACGTGCCATCAACCAACGTTTT 125 ************************************************************ consensus_438#0 GTCATGAGATTGAAATAGTGTATTCGAAAAAAAAA-TTCTCCCCTCTTTCGTCGGCTCGG 1079 consensus_438#1 GTCATGAGATTGAAATAGTGTATTCGAAAAAAAAAATTCTCCCCTCTTTCGTCGGCTCGG 185 *********************************** ************************ consensus_438#0 CTGTCACGTGTCAGTCCTCTTCGTCGAGCAATAAGTACATCGATCAGCGATCAGCTCTTC 1139 consensus_438#1 CTGTCACGTGTCAGTCCTCTTCGTCGAGCAATAAGTACATCGATCAGCGATCAGCTCTTC 245 ************************************************************ consensus_438#0 CTTCAAGCGTGTGTGTTTCCACAGTACATAACTTGAAGTCCAGGAATATGTGTGAAAAAA 1199 consensus_438#1 CTTCAAGCGTGTGTGTTTCCACAGTACATAACTTGAAGTCCAGGAATATGTGTGAAAAAA 305 ************************************************************ consensus_438#0 AAAAAGCATTAGCGGCGTGTGCAATCGCCAAAAAAAAATGGAAGAAAAAAATATAAAAAG 1259 consensus_438#1 AAAAAGCATTAGCGGCGTGTGCAATCGCCAAAAAAAAATGGAAGAAAAAAATATAAAAAG 365 ************************************************************ consensus_438#0 AAGTTGTTTCCACAGAGTGGTTAGCTAGGTAGCTATAGCTGTGTAGATTTACAGGTGGCA 1319 consensus_438#1 AAGTTGTTTCAAAAAAAAAAAAAAA----------------------------------- 390 ********** * * * * consensus_438#0 CGTATTGCTTGGTGACACGTGTTTTTCTTTCTTTCTTGTATTTTATTTTATTTTCTTTTC 1379 consensus_438#1 ------------------------------------------------------------ consensus_438#0 TTTTGCCTCGGCCGGCCGGCAGGGGGTGTGGCCCACCGGGAAAGAGTAAGACAGGAGTGT 1439 consensus_438#1 ------------------------------------------------------------ consensus_438#0 TCGTGCGTTCCATGATTACAGGAGTGCGGGTGAAGAAAACCTAAGAAAAATTAAAAGAA 1498 consensus_438#1 ----------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||