cluster # 4539

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 4539 cluster # 4539 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4539#0 length = 750 sequences # 2

consensus_4539#1 length = 742 sequences # 1

consensusID : consensus_4539#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 750
fasta sequence

                              [AAATGAAATTGTACTTCCAATGGAAGGGCAACCATCCAGGACACTGTGCTTCTGTCTTAGCAAACTCAAACTACTGATGTGGGTTACATGTTACCTCTAAATCGTGATGCCATAAGAAATTTGGCTTGTATATGTACATCAGCTATAACTAGGATTCCACTGCAGTGTTGTTCTTGTGGAATATGTACAAATGACTTCAAAATTTGGGGCTCCCATCTTGCCAGAACTGAATTCTATAAACTTTTAGTTGCACAACTAAATTTGTTAAACTAGTTCATGTGTATATAGTTTCTCCTGCGGTGGTGAACAGGCCGATTTCTTAGAACCACGATTTTGTGCAGGGTATAGTCTAAGAGAGCTTTTAAGATGATCAATTCCTTGTCTTCTAAGAGCATTTGGGTTGATACCTGCCTTGTGAGCTGCGATTACTCCAATGGCTTCCCAATAGTTCTGGACATTTAGCGCCTCTATATTGAACTTGTCAGGGGTATCATCAAGAACTGTTTCATTTTCTTGAACCGTAATGATTAAGGGCTTGTTCTTTGTAGCAGTTCTAGCAAAGGCAATAGTACCATCTCCTCCGCAAGCATCTTTTGGAAGAATCACACTATCAACATCACTAGCCACTATGCAACCATTATCCATGTTTCCATTCCTCCTCATCACATATTGAGGGGCATTGCTTAACCCGGCAAGCACACAAGGTAGAAAGGTATGTCCAATCTCTTCAGCAGCAGATCTTGGGGACAC]

[+] EMBL CB653148             [AAATGAAATTGTACTTCCAATGGAAGGGCAACCATCCAGGACACTGTGCTTCTGTCTTAGCAAACTCAAACTACTGATGTGGGTTACATGTTACCTCTAAATCGTGATGCCATAAGAAATTTGGCTTGTATATGTACATCAGCTATAACTAGGATTCCACTGCAGTGTTGTTCTTGTGGAATATGTACAAATGACTTCAAAATTTGGGGCTCCCATCTTGCCAGAACTGAATTCTATAAACTTTTAGTTGCACAACTAAATTTGTTAAACTAGTTCATGTGTATATAGTTTCTCCTGCGGTGGTGAACAGGCCGATTTCTTAGAACCACGATTTTGTGCAGGGTATAGTCTAAGAGAGCTTTTAAGATGATCAATTCCTTGTCTTCTAAGAGCATTTGGGTTGATACCTGCCTTGTGAGCTGCGATTACTCCAATGGCTTCCCAATAGTTCTGGACATTTAGCGCCTCTATATTGAACTTGTCAGGGGTATCATCAAGAACTGTTTCATTTTCTTGAACCGTAATGATTAAGGGCTTGTTCTTTGTAGCAGTTCTAGCAAAGGCAATAGTACCATCTCCTCCGCAAGCATCTTTTGGAAGAATCACACTATCAACATCACTAGCCACTATGCAACCATTATCCATGTTTCCATTCCTCCTCATCACATATTGAGGGGCATTGCTTAACCCGGCAAGCACACAAGGTAGAAAGGTATGTCCAATCTCTTCAGCAGCAGATCTTGGGGACAC]
[-] EMBL C96942               [                                              tttTTCTGTCTTAGCAAACTCAAACTACTGATGTGGGNTACATGTTACCTCTAAATCGTGATGCCATAAGAAATTTGNCTTGTATATGTACATCAGCTATAACTAGGATTCCACTGCAGTGTTGTTCTTGTGGAATATGTACAAATGACTTCAAAATTTGGGGCTCCCATCTTGCCAGAACTGAATTCTATAAACTTTTAGTTGCACAACTAAATTTGTTAAAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]




>consensus_4539#0
AAATGAAATTGTACTTCCAATGGAAGGGCAACCATCCAGGACACTGTGCTTCTGTCTTAG
CAAACTCAAACTACTGATGTGGGTTACATGTTACCTCTAAATCGTGATGCCATAAGAAAT
TTGGCTTGTATATGTACATCAGCTATAACTAGGATTCCACTGCAGTGTTGTTCTTGTGGA
ATATGTACAAATGACTTCAAAATTTGGGGCTCCCATCTTGCCAGAACTGAATTCTATAAA
CTTTTAGTTGCACAACTAAATTTGTTAAACTAGTTCATGTGTATATAGTTTCTCCTGCGG
TGGTGAACAGGCCGATTTCTTAGAACCACGATTTTGTGCAGGGTATAGTCTAAGAGAGCT
TTTAAGATGATCAATTCCTTGTCTTCTAAGAGCATTTGGGTTGATACCTGCCTTGTGAGC
TGCGATTACTCCAATGGCTTCCCAATAGTTCTGGACATTTAGCGCCTCTATATTGAACTT
GTCAGGGGTATCATCAAGAACTGTTTCATTTTCTTGAACCGTAATGATTAAGGGCTTGTT
CTTTGTAGCAGTTCTAGCAAAGGCAATAGTACCATCTCCTCCGCAAGCATCTTTTGGAAG
AATCACACTATCAACATCACTAGCCACTATGCAACCATTATCCATGTTTCCATTCCTCCT
CATCACATATTGAGGGGCATTGCTTAACCCGGCAAGCACACAAGGTAGAAAGGTATGTCC
AATCTCTTCAGCAGCAGATCTTGGGGACAC

consensusID : consensus_4539#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 742
fasta sequence

                              [ATTCATTAATTAGCAAACGCACTTATTGGCTCCATTCGTTTCATTTATGCTTATGCAAGATGTACTAATTAATGTGTTGTTAGTATACTTTAGGATCGATCAAATTAAACCCTGGTTGCTCTTCAATCCATCCTCACGATCCTGTCCAAGTAACAAGTAGATGCAAGGCGTAGAGAGGGTAAGCTCTAGGTTCAATTCTGCAACAGCCCGGTTATCATCTTGGTGGTTACAGCTACTTGCGTCGTCGGCGACTGTACATTCATCGCCATTGACGTCCTTGGAGGAAGAAGATGAATTGTGGCCCGGATGCTTTGCACCACGTTCGTCGTGAGCTTCGCTTCGCAGACGGCGACGCCGTCGACGGTGTTCATCATCATGTAGCGAGGGTGGATGCTCTATAGTACTATCCATCAGCTTGGAGTTCCAGTGGTTCATGACCTCTTTGTCTGTCCTCCCCGGTAGCCTCCCAGCGATGAGGGACCAACGGTTGCCGAGCAAAGCGTGCAGCTTGAGGAGGAGCTCGTCCTCTTCCTCGGAGAAGCTCCTCCTCTTTCTGCTCCGGCTAAGCGGCGACGGCGGATCACCGGCCGGCAAGTGCTCGGAGATGAGCCGTGGTGGAGGCTGCGATGACACCTGCAGACTTGCAGAGCTGCCTTGTGAGCTGCGATTACTCCAATGGCTTCCCAATAGTTCTGGACATTTAGCGCCTCTATATTGAACTTGTCAGGGGTATCATCAAGAA]

[+] EMBL CB678506             [ATTCATTAATTAGCAAACGCACTTATTGGCTCCATTCGTTTCATTTATGCTTATGCAAGATGTACTAATTAATGTGTTGTTAGTATACTTTAGGATCGATCAAATTAAACCCTGGTTGCTCTTCAATCCATCCTCACGATCCTGTCCAAGTAACAAGTAGATGCAAGGCGTAGAGAGGGTAAGCTCTAGGTTCAATTCTGCAACAGCCCGGTTATCATCTTGGTGGTTACAGCTACTTGCGTCGTCGGCGACTGTACATTCATCGCCATTGACGTCCTTGGAGGAAGAAGATGAATTGTGGCCCGGATGCTTTGCACCACGTTCGTCGTGAGCTTCGCTTCGCAGACGGCGACGCCGTCGACGGTGTTCATCATCATGTAGCGAGGGTGGATGCTCTATAGTACTATCCATCAGCTTGGAGTTCCAGTGGTTCATGACCTCTTTGTCTGTCCTCCCCGGTAGCCTCCCAGCGATGAGGGACCAACGGTTGCCGAGCAAAGCGTGCAGCTTGAGGAGGAGCTCGTCCTCTTCCTCGGAGAAGCTCCTCCTCTTTCTGCTCCGGCTAAGCGGCGACGGCGGATCACCGGCCGGCAAGTGCTCGGAGATGAGCCGTGGTGGAGGCTGCGATGACACCTGCAGACTTGCAGAGCTGCCTTGTGAGCTGCGATTACTCCAATGGCTTCCCAATAGTTCTGGACATTTAGCGCCTCTATATTGAACTTGTCAGGGGTATCATCAAGAA]




>consensus_4539#1
ATTCATTAATTAGCAAACGCACTTATTGGCTCCATTCGTTTCATTTATGCTTATGCAAGA
TGTACTAATTAATGTGTTGTTAGTATACTTTAGGATCGATCAAATTAAACCCTGGTTGCT
CTTCAATCCATCCTCACGATCCTGTCCAAGTAACAAGTAGATGCAAGGCGTAGAGAGGGT
AAGCTCTAGGTTCAATTCTGCAACAGCCCGGTTATCATCTTGGTGGTTACAGCTACTTGC
GTCGTCGGCGACTGTACATTCATCGCCATTGACGTCCTTGGAGGAAGAAGATGAATTGTG
GCCCGGATGCTTTGCACCACGTTCGTCGTGAGCTTCGCTTCGCAGACGGCGACGCCGTCG
ACGGTGTTCATCATCATGTAGCGAGGGTGGATGCTCTATAGTACTATCCATCAGCTTGGA
GTTCCAGTGGTTCATGACCTCTTTGTCTGTCCTCCCCGGTAGCCTCCCAGCGATGAGGGA
CCAACGGTTGCCGAGCAAAGCGTGCAGCTTGAGGAGGAGCTCGTCCTCTTCCTCGGAGAA
GCTCCTCCTCTTTCTGCTCCGGCTAAGCGGCGACGGCGGATCACCGGCCGGCAAGTGCTC
GGAGATGAGCCGTGGTGGAGGCTGCGATGACACCTGCAGACTTGCAGAGCTGCCTTGTGA
GCTGCGATTACTCCAATGGCTTCCCAATAGTTCTGGACATTTAGCGCCTCTATATTGAAC
TTGTCAGGGGTATCATCAAGAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4539#0      AAATGAAATTGTACTTCCAATGG-AAGGGCAACCATCCAGGACACTGTGCTTCTGTCTTA 59
consensus_4539#1      ----------ATTCATTAATTAGCAAACGCACTTATTGGCTCCATTCGTTTCATTTATGC 50
                                 * * *  * * * **  ***   **      ** *    *  * * *  

consensus_4539#0      GCAAACTCAAACTACTGATGTGGGTTACATGTTACCTCTAAATCGTGATGCCATAAGAAA 119
consensus_4539#1      TTATGCAAGATGTACTAAT-----TAATGTGTTGTTAGTATACTTTAGGATCG-ATCAAA 104
                        *  *   *  **** **     * *  ****     ** *   *     *  *  ***

consensus_4539#0      TTTGGCTTGTATATGTACATCAG-CTATAACTAGGATTCCACTGCAGTGTTGTTCTTGTG 178
consensus_4539#1      TTAAACCC-TGGTTGCTCTTCAATCCATCCTCACGATCCTGTCCAAGTAACAAGTAGATG 163
                      **   *   *   **  * ***  * **    * *** *      ***          **

consensus_4539#0      GAATATGTACAAATGACTTCAAAATTTGGGGCTCCCATCTTGCCAGAACTGAATTCTATA 238
consensus_4539#1      CAAGGCGTAGAGAGGGT---AAGCTCTAGG--TTCAATTCTGCAACAGCCCGGT--TATC 216
                       **   *** * * *     **  * * **  * * **  *** * * *    *  *** 

consensus_4539#0      AACTTTTAGTTGCACAACTAAATTTGTTAAACTAGTTCATGTGTATATAGTTTCTCCTGC 298
consensus_4539#1      ATCTTGGTGGT-TACAGCTACTTGCGTCGTCGGCGACTGTACATTCATCGCCATTGACGT 275
                      * ***   * *  *** ***  *  **       *    *   *  ** *    *   * 

consensus_4539#0      GGTGGTGAACAGGCCGATTTCTTAGAACCACGATTTTGTGCAGGGTATAGTCTAAGAGA- 357
consensus_4539#1      CCTTG-GAGGAAGAAGATGAATTGTGGCCCGGATGCTTTGCACCACGTTCGTCGTGAGCT 334
                        * * **  * *  ***   **    **  ***  * ****     *       ***  

consensus_4539#0      --GCTTTTAAGATGATCAATTCCTTGTCT---TCTAAGAGCATTTGG-GTTGATACCTGC 411
consensus_4539#1      TCGCTTCGCAGACGGCGACGCCGTCGACGGTGTTCATCATCATGTAGCGAGGGTGGATGC 394
                        ****   *** *   *   * * * *    *  *  * *** * * *  * *   ***

consensus_4539#0      CTTGTGAGCTGCGATTACTCCAATGGCTTCCCAATAGTTCTGGACAT-TTAGCGCCTCTA 470
consensus_4539#1      TCTAT-AGTACTATCCATCAGCTTGGAGTTCCAGTGGTTCATGACCTCTTTGTCTGTCCT 453
                        * * **        *      ***  * *** * ****  *** * ** *    **  

consensus_4539#0      TATTG--AACTTGTCAGGGGTATCATCAAGAACTGTTTCATTTTCTTGAACCGTAATGAT 528
consensus_4539#1      CCCCGGTAGCCTCCCAGCGATGAGGG-ACCAACGGTTGC---CGAGCAAAGCGTGCAGCT 509
                          *  * * *  *** * *      *  *** *** *         ** ***   * *

consensus_4539#0      TAAGGGCTTGTTCTTTGTAGCAGTTCTAGCAAAGGCAATAGTACCATCTCCTCCGCAAGC 588
consensus_4539#1      TGAGGAGGAGCTC---GTCCTCTTCCTCGGAGAAGCTCCTCCTCTTTCTGCTCCGGCTAA 566
                      * ***    * **   **     * ** * * * **       *  *** *****     

consensus_4539#0      ATCTTTTGGAAGAATCACACTATCAACATCACTAGCCACTATGCAACCATTATCCATGTT 648
consensus_4539#1      GCGGCGACGGCGGATCAC-CGGCCGGCA--AGTGCTCGGAGATGAGCCGTGGTGGAGGCT 623
                              *  * ***** *   *  **  * *   *       * ** *  *  * * *

consensus_4539#0      TCCATTCCTCCTCATCACATATTGAGGGGCATTGC---------TTAACCCGGCAAGCAC 699
consensus_4539#1      GCGATGACACCTGCAGACTTGCAGAGCTGCCTTGTGAGCTGCGATTACTCCAATGGCTTC 683
                       * **  * ***    ** *   ***  ** ***          ***  **        *

consensus_4539#0      ACAAGGTAGAAAGGTATGTCCAATCTCTTCA-GCAGCAGATCTTGGGGACAC-------- 750
consensus_4539#1      CCAA--TAGTTCTGGACATTTAGCGCCTCTATATTGAACTTGTCAGGGGTATCATCAAGA 741
                       ***  ***    * *  *  *    **  *    * *  * *  ***  *         

consensus_4539#0      -
consensus_4539#1      A 742