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Oryza sativa
cluster # 4718 cluster # 4718       Sequences # 3       consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4718#0 length = 2359 sequences # 1  
 consensus_4718#1 length = 1536 sequences # 1  
consensus_4718#2 length = 333 sequences # 1  
consensusID : consensus_4718#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 2359
fasta sequence 
                              [AACATGATATCGGAATCCGCCTTTGCGAAGCGCGGCGGCGGTGAGGTGGTGTGGGCACGCCACCGTCGGCAACGACGAGGCGAGTAGCCGAAACGGGGAGGAGGAGGAGGAAACGGAGGCGGAGGGAGGCGCGCAGGCGTCTGCGCCGATCAGGTCACGGCGCCGCTCTGGACCCTCCGGAGATGTGCACCCTTCTTCAGAGCAACAAGCGCCCGAAGGAAAGAACCAGAAAATTAAATCGCGTAATGGAGGAAGATGTCCTTTTCAGTGTTTATTGGCTCCTTGAAGACAAACAAGAAGAGCAAATCCATCCAACTTAGCAAAGATGCATTGTTGGAATTGTAGGAGAGCAAAAGAAGAATCATTGGCATAAGCATGAATATACCACAATGCTTTAAAAGAAGATGCAAAAGAAAAACGCTTCATGTTGCATACCTGCTCGACTCCTCTAGCTGCAGGGCTCCTCCCCTCAAAGCTCCCAGCCATTGCAGCCAGGAAAGACGCAGCAAAAGAAACGGAGAGCGATGCCTTGCCCCTGAGCTGAGCTCAAGTTCAAACCTCCTTTGATCAACAGTGGGAGAAAGCAAAAGATGGCAGCAAAGTGACAGAAAGAAAGAACCACGCAAGGAAAGAAGCGAAGCAAGAGAGAGGACGGACGGACGGGGGCAGAGCTTGAGGACGGACGGAGGAGGGAGAAGAAGCAGCACCGTCACTGAAGGCGACCTGCGCAATTCAGGGGCCCCGGAAAAGGAAACGGTGGCAATTTTATTAACTGCTGGGTTTAAAGATGAGAGAGGCAGGCAGTCAGTCTTCGTTCGACACAACCTGCAGAGGTAAATCCTGTTCTCCCTTTTGATTCTGCGCCCCTCGCTTTCCGTATATTTTCTCTTGGGTAGTGCTAGTGCGGCATCTCTCTGTAGTTTGTGACTTCGAGTGTACCGAACAGCAGTGGCATTTAGCTTTCCTCTGTTAGCGTGAGTAGGCGCTCAGAAATCTTGGATTTCATGTCAAATCTCAGGATTTGCCACAACTGCATGCCACAAGCCCCGGAAAACCTGGTCACTGCCTTCCTTTTCCCTAGCATCTCTTCATCAGTCGGTACATTAAACTACCTCAGTTTTGCTGAAAATCTTGCATAATTGGATCATCCGATCTCTGATTACCATGATCAGCATTTCTCAAAGAATGCATCGAATAACAGAATTACTCCACTACCGTAACAACCTTACATTGTTTAAAATTCACGGGCATCCGATCTGTCTAGGGTGGCCAGTTAACCATCCTTGGCTCCTTGCCCAGCTGTGGTCCAGAAACGTGGTACTAGTATCGTGATCATGAGTTTGGACGTTTTAGATAGTAATGAGGTTGGATTTGCAGAGGCAAGCATCCACGCACTGCTGTTAGGATTTTGGGACAGCACATGATGGTCCGAAAGAAGAGACGATGGAGGGGGGTAGTGATGCAGCACGTGTGCAGCGTAGGCAGGCGCTGCCCCCGTTCTGGCCTGCACAACTGTTTGGTCACTCCTGTCTGCAAATGATGCCGTCTCGGTCGCTTTTGCTGACTTGATCTTGCTGGGGTACGTTTTTTCTCTCCCTTTTTCTCCAACGAGCAGCGATCGTGACGTCTTCGTAGCTCATAATTTCGTATTCTACCTTTCGTCTCCCCAGTACTGTATGTATCAGTATCACTGCCTACAAATGTACTATGTCTACCGGTGCTACGTGCATTTATGCGCTCACCTTTGCTCACGACATGTCTATTCATTGCGCATTTATCCTATTGCAGTCGTACTGTGATCAGTTGTACTGCTGGTGCTGCTTTGGTCGTGTGCATCCCCAAGGATTTTCTGCGGTGTCCACTGATCAGCTGGAAGTGAAAAGATGGATGGTGGGGAAGAAAAGGTAGAGAAGGCAAGTAGGCATGTGAAAGCACCAACGAGACAAGCATGACGGGCCAAGGGAAAAGATAAAACTTGTCCTGCCTCCTCAACAGCAGTAAATGTGTTGATTTGTTCCCCTTGCATTTCCCGTGTAGCGTCATGGCATTGGCAGTAACTCGTGGACGATTTCTCTAGCGATTGTTACCCGCTGTTCATGCTCAAAATGGCACCATAATCTTATACACAGCCCTACTCTTGTTCTGCAGCTATTTGCACTTGTTCTGCACCTACGGTCTCAAAAAAGGCATATTTGTATGCCTCCTACACGGGTAAAAACAGGTGCAGCAAATAGTACCAGTAAGTCCAAATTAACCCTTTTATTACTGTGGATGAGACAAAATGTAGGAGCTAGCTGTCTGCTGGCATGTGGAGTGACTGGAAGGCATGGCATGTGAAACTTGTGAAGCCATACAGTAC]

[+] EMBL AK064605             [AACATGATATCGGAATCCGCCTTTGCGAAGCGCGGCGGCGGTGAGGTGGTGTGGGCACGCCACCGTCGGCAACGACGAGGCGAGTAGCCGAAACGGGGAGGAGGAGGAGGAAACGGAGGCGGAGGGAGGCGCGCAGGCGTCTGCGCCGATCAGGTCACGGCGCCGCTCTGGACCCTCCGGAGATGTGCACCCTTCTTCAGAGCAACAAGCGCCCGAAGGAAAGAACCAGAAAATTAAATCGCGTAATGGAGGAAGATGTCCTTTTCAGTGTTTATTGGCTCCTTGAAGACAAACAAGAAGAGCAAATCCATCCAACTTAGCAAAGATGCATTGTTGGAATTGTAGGAGAGCAAAAGAAGAATCATTGGCATAAGCATGAATATACCACAATGCTTTAAAAGAAGATGCAAAAGAAAAACGCTTCATGTTGCATACCTGCTCGACTCCTCTAGCTGCAGGGCTCCTCCCCTCAAAGCTCCCAGCCATTGCAGCCAGGAAAGACGCAGCAAAAGAAACGGAGAGCGATGCCTTGCCCCTGAGCTGAGCTCAAGTTCAAACCTCCTTTGATCAACAGTGGGAGAAAGCAAAAGATGGCAGCAAAGTGACAGAAAGAAAGAACCACGCAAGGAAAGAAGCGAAGCAAGAGAGAGGACGGACGGACGGGGGCAGAGCTTGAGGACGGACGGAGGAGGGAGAAGAAGCAGCACCGTCACTGAAGGCGACCTGCGCAATTCAGGGGCCCCGGAAAAGGAAACGGTGGCAATTTTATTAACTGCTGGGTTTAAAGATGAGAGAGGCAGGCAGTCAGTCTTCGTTCGACACAACCTGCAGAGGTAAATCCTGTTCTCCCTTTTGATTCTGCGCCCCTCGCTTTCCGTATATTTTCTCTTGGGTAGTGCTAGTGCGGCATCTCTCTGTAGTTTGTGACTTCGAGTGTACCGAACAGCAGTGGCATTTAGCTTTCCTCTGTTAGCGTGAGTAGGCGCTCAGAAATCTTGGATTTCATGTCAAATCTCAGGATTTGCCACAACTGCATGCCACAAGCCCCGGAAAACCTGGTCACTGCCTTCCTTTTCCCTAGCATCTCTTCATCAGTCGGTACATTAAACTACCTCAGTTTTGCTGAAAATCTTGCATAATTGGATCATCCGATCTCTGATTACCATGATCAGCATTTCTCAAAGAATGCATCGAATAACAGAATTACTCCACTACCGTAACAACCTTACATTGTTTAAAATTCACGGGCATCCGATCTGTCTAGGGTGGCCAGTTAACCATCCTTGGCTCCTTGCCCAGCTGTGGTCCAGAAACGTGGTACTAGTATCGTGATCATGAGTTTGGACGTTTTAGATAGTAATGAGGTTGGATTTGCAGAGGCAAGCATCCACGCACTGCTGTTAGGATTTTGGGACAGCACATGATGGTCCGAAAGAAGAGACGATGGAGGGGGGTAGTGATGCAGCACGTGTGCAGCGTAGGCAGGCGCTGCCCCCGTTCTGGCCTGCACAACTGTTTGGTCACTCCTGTCTGCAAATGATGCCGTCTCGGTCGCTTTTGCTGACTTGATCTTGCTGGGGTACGTTTTTTCTCTCCCTTTTTCTCCAACGAGCAGCGATCGTGACGTCTTCGTAGCTCATAATTTCGTATTCTACCTTTCGTCTCCCCAGTACTGTATGTATCAGTATCACTGCCTACAAATGTACTATGTCTACCGGTGCTACGTGCATTTATGCGCTCACCTTTGCTCACGACATGTCTATTCATTGCGCATTTATCCTATTGCAGTCGTACTGTGATCAGTTGTACTGCTGGTGCTGCTTTGGTCGTGTGCATCCCCAAGGATTTTCTGCGGTGTCCACTGATCAGCTGGAAGTGAAAAGATGGATGGTGGGGAAGAAAAGGTAGAGAAGGCAAGTAGGCATGTGAAAGCACCAACGAGACAAGCATGACGGGCCAAGGGAAAAGATAAAACTTGTCCTGCCTCCTCAACAGCAGTAAATGTGTTGATTTGTTCCCCTTGCATTTCCCGTGTAGCGTCATGGCATTGGCAGTAACTCGTGGACGATTTCTCTAGCGATTGTTACCCGCTGTTCATGCTCAAAATGGCACCATAATCTTATACACAGCCCTACTCTTGTTCTGCAGCTATTTGCACTTGTTCTGCACCTACGGTCTCAAAAAAGGCATATTTGTATGCCTCCTACACGGGTAAAAACAGGTGCAGCAAATAGTACCAGTAAGTCCAAATTAACCCTTTTATTACTGTGGATGAGACAAAATGTAGGAGCTAGCTGTCTGCTGGCATGTGGAGTGACTGGAAGGCATGGCATGTGAAACTTGTGAAGCCATACAGTAC]




>consensus_4718#0
AACATGATATCGGAATCCGCCTTTGCGAAGCGCGGCGGCGGTGAGGTGGTGTGGGCACGC
CACCGTCGGCAACGACGAGGCGAGTAGCCGAAACGGGGAGGAGGAGGAGGAAACGGAGGC
GGAGGGAGGCGCGCAGGCGTCTGCGCCGATCAGGTCACGGCGCCGCTCTGGACCCTCCGG
AGATGTGCACCCTTCTTCAGAGCAACAAGCGCCCGAAGGAAAGAACCAGAAAATTAAATC
GCGTAATGGAGGAAGATGTCCTTTTCAGTGTTTATTGGCTCCTTGAAGACAAACAAGAAG
AGCAAATCCATCCAACTTAGCAAAGATGCATTGTTGGAATTGTAGGAGAGCAAAAGAAGA
ATCATTGGCATAAGCATGAATATACCACAATGCTTTAAAAGAAGATGCAAAAGAAAAACG
CTTCATGTTGCATACCTGCTCGACTCCTCTAGCTGCAGGGCTCCTCCCCTCAAAGCTCCC
AGCCATTGCAGCCAGGAAAGACGCAGCAAAAGAAACGGAGAGCGATGCCTTGCCCCTGAG
CTGAGCTCAAGTTCAAACCTCCTTTGATCAACAGTGGGAGAAAGCAAAAGATGGCAGCAA
AGTGACAGAAAGAAAGAACCACGCAAGGAAAGAAGCGAAGCAAGAGAGAGGACGGACGGA
CGGGGGCAGAGCTTGAGGACGGACGGAGGAGGGAGAAGAAGCAGCACCGTCACTGAAGGC
GACCTGCGCAATTCAGGGGCCCCGGAAAAGGAAACGGTGGCAATTTTATTAACTGCTGGG
TTTAAAGATGAGAGAGGCAGGCAGTCAGTCTTCGTTCGACACAACCTGCAGAGGTAAATC
CTGTTCTCCCTTTTGATTCTGCGCCCCTCGCTTTCCGTATATTTTCTCTTGGGTAGTGCT
AGTGCGGCATCTCTCTGTAGTTTGTGACTTCGAGTGTACCGAACAGCAGTGGCATTTAGC
TTTCCTCTGTTAGCGTGAGTAGGCGCTCAGAAATCTTGGATTTCATGTCAAATCTCAGGA
TTTGCCACAACTGCATGCCACAAGCCCCGGAAAACCTGGTCACTGCCTTCCTTTTCCCTA
GCATCTCTTCATCAGTCGGTACATTAAACTACCTCAGTTTTGCTGAAAATCTTGCATAAT
TGGATCATCCGATCTCTGATTACCATGATCAGCATTTCTCAAAGAATGCATCGAATAACA
GAATTACTCCACTACCGTAACAACCTTACATTGTTTAAAATTCACGGGCATCCGATCTGT
CTAGGGTGGCCAGTTAACCATCCTTGGCTCCTTGCCCAGCTGTGGTCCAGAAACGTGGTA
CTAGTATCGTGATCATGAGTTTGGACGTTTTAGATAGTAATGAGGTTGGATTTGCAGAGG
CAAGCATCCACGCACTGCTGTTAGGATTTTGGGACAGCACATGATGGTCCGAAAGAAGAG
ACGATGGAGGGGGGTAGTGATGCAGCACGTGTGCAGCGTAGGCAGGCGCTGCCCCCGTTC
TGGCCTGCACAACTGTTTGGTCACTCCTGTCTGCAAATGATGCCGTCTCGGTCGCTTTTG
CTGACTTGATCTTGCTGGGGTACGTTTTTTCTCTCCCTTTTTCTCCAACGAGCAGCGATC
GTGACGTCTTCGTAGCTCATAATTTCGTATTCTACCTTTCGTCTCCCCAGTACTGTATGT
ATCAGTATCACTGCCTACAAATGTACTATGTCTACCGGTGCTACGTGCATTTATGCGCTC
ACCTTTGCTCACGACATGTCTATTCATTGCGCATTTATCCTATTGCAGTCGTACTGTGAT
CAGTTGTACTGCTGGTGCTGCTTTGGTCGTGTGCATCCCCAAGGATTTTCTGCGGTGTCC
ACTGATCAGCTGGAAGTGAAAAGATGGATGGTGGGGAAGAAAAGGTAGAGAAGGCAAGTA
GGCATGTGAAAGCACCAACGAGACAAGCATGACGGGCCAAGGGAAAAGATAAAACTTGTC
CTGCCTCCTCAACAGCAGTAAATGTGTTGATTTGTTCCCCTTGCATTTCCCGTGTAGCGT
CATGGCATTGGCAGTAACTCGTGGACGATTTCTCTAGCGATTGTTACCCGCTGTTCATGC
TCAAAATGGCACCATAATCTTATACACAGCCCTACTCTTGTTCTGCAGCTATTTGCACTT
GTTCTGCACCTACGGTCTCAAAAAAGGCATATTTGTATGCCTCCTACACGGGTAAAAACA
GGTGCAGCAAATAGTACCAGTAAGTCCAAATTAACCCTTTTATTACTGTGGATGAGACAA
AATGTAGGAGCTAGCTGTCTGCTGGCATGTGGAGTGACTGGAAGGCATGGCATGTGAAAC
TTGTGAAGCCATACAGTAC

consensusID : consensus_4718#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1536
fasta sequence 
                              [ACTCTCAAGCAAGGACCAATCTGTGTGCAGCAACTGCCAGCTAACATTTGGCTTTACGAGGAAGAAGCACAACTGTTACAACTGTGGTTCCATGTTCTGCAATTCCTGCAGCAATAACAAGGTTTCCAGAGCAGCTCTTGCACCAGATAGGAGCAAAAGGTACCGTGTTTGTGATGCATGTTTCAGTCAAATGCAGAAAGTTGAGGAGCATAGAAAATTAGATCCACAACAGAAGATCCAAAAGGATGAGGTATGTCCAATAGAAATAAGATCATATACGCCAAAATTGGCGCGCATATTCAAGGAAGCAAATGCAATTATGGAGAAAATGGCATCAGCACAAAGCCCCCATCAGAGAAGTCAGAATTTGGCTGTGCCAGATCATGTGAGGACATTAAGATGGGGCCTAGTAGAGTGCCCCAGTCAATTCAGATGTGTGAGAGAGAGCATTCCTTATTGTTCAACATTGAATAAACAGACAGTCTCTGGTTCTATTGTACGGGTAATGAATGAGACAATGGCACCTAAACCTGCCAGCTCTTTGCTCAAATCTGCTAATGATTCAAAAGCGGAATTAGACTTGATGGAAAATATATTATTGGAAGAAGTGAAACAGCTTCAAGAGCAGGTAACTACTCTTGCAAAACAGTGCCGCCAAAGGAGCCTGAAAGTTCAGCTGTACAAACGAAAAGTCGAGGAGACTTGGTTAATTGCCAAGGATGAGGCTGCGAAGTGCAAAGCTGCTAAAGACGTAATTAAGGTTTTGATCGATCAGCTTGATTTTTTATCAAAGAACCTTTTGGCTGGTGAGAAATTAGACAACTCCAGAATCATGCCTAGCCACATCGCCAGTGCAAAATCACTAAAAGCAGAATTACCAGACCCACCTGACAAAAATGTATTCACCAGCGAATTTCAACAGTCGAAGAGCAACAGAGATCACCACAACAGCAGGCAGGTGGATAGGGAATGCACACAACCTTCAATTGCTTCCATGGCGAATTACTCGGTTACGCATCAGAATTGCAGAAGAACTTCCAACGGCAGCACCAGATGCACCGAGGGAACAGATGCCACCACTGCTCCTACCGATTCCAACGGTGCGATCGAGCAGATCGAGCGCGGGGTTTACGCGACAGTGGTTACATCCCCCGGTGGGAAGAAGTGCATCAAGCGCATCCGGTTCAGTCGGAAGCACTTTGGAGAGGATCAGGCGCAGAAATGGTGGGAAGCCAATGAGAGCATGATTTTTGGAAAATACAGCAGCATGGAACAAACGGTGGGGTAATCTCTTCTCCAACTCCAAGCAACCCAAATGAAGAACATAAAGGAATAGTCAGCTCTGCCGCCAAATTGTTAATAGGACACAGTAGAAGTAGATAGAAATATGCTACTGCTCGATGAACTGGCGTGGATAGGATGGGGATCATGGAGAAAAATCAGAAAAAGGGGTTGAGACTTTGAGAGACCAGCTCTGAACAGTAAACTGCATCTGGATTGTGCGGCTGTGGCTTGCGGAATTTGGAGTAGGATCTA]

[+] EMBL AK106462             [ACTCTCAAGCAAGGACCAATCTGTGTGCAGCAACTGCCAGCTAACATTTGGCTTTACGAGGAAGAAGCACAACTGTTACAACTGTGGTTCCATGTTCTGCAATTCCTGCAGCAATAACAAGGTTTCCAGAGCAGCTCTTGCACCAGATAGGAGCAAAAGGTACCGTGTTTGTGATGCATGTTTCAGTCAAATGCAGAAAGTTGAGGAGCATAGAAAATTAGATCCACAACAGAAGATCCAAAAGGATGAGGTATGTCCAATAGAAATAAGATCATATACGCCAAAATTGGCGCGCATATTCAAGGAAGCAAATGCAATTATGGAGAAAATGGCATCAGCACAAAGCCCCCATCAGAGAAGTCAGAATTTGGCTGTGCCAGATCATGTGAGGACATTAAGATGGGGCCTAGTAGAGTGCCCCAGTCAATTCAGATGTGTGAGAGAGAGCATTCCTTATTGTTCAACATTGAATAAACAGACAGTCTCTGGTTCTATTGTACGGGTAATGAATGAGACAATGGCACCTAAACCTGCCAGCTCTTTGCTCAAATCTGCTAATGATTCAAAAGCGGAATTAGACTTGATGGAAAATATATTATTGGAAGAAGTGAAACAGCTTCAAGAGCAGGTAACTACTCTTGCAAAACAGTGCCGCCAAAGGAGCCTGAAAGTTCAGCTGTACAAACGAAAAGTCGAGGAGACTTGGTTAATTGCCAAGGATGAGGCTGCGAAGTGCAAAGCTGCTAAAGACGTAATTAAGGTTTTGATCGATCAGCTTGATTTTTTATCAAAGAACCTTTTGGCTGGTGAGAAATTAGACAACTCCAGAATCATGCCTAGCCACATCGCCAGTGCAAAATCACTAAAAGCAGAATTACCAGACCCACCTGACAAAAATGTATTCACCAGCGAATTTCAACAGTCGAAGAGCAACAGAGATCACCACAACAGCAGGCAGGTGGATAGGGAATGCACACAACCTTCAATTGCTTCCATGGCGAATTACTCGGTTACGCATCAGAATTGCAGAAGAACTTCCAACGGCAGCACCAGATGCACCGAGGGAACAGATGCCACCACTGCTCCTACCGATTCCAACGGTGCGATCGAGCAGATCGAGCGCGGGGTTTACGCGACAGTGGTTACATCCCCCGGTGGGAAGAAGTGCATCAAGCGCATCCGGTTCAGTCGGAAGCACTTTGGAGAGGATCAGGCGCAGAAATGGTGGGAAGCCAATGAGAGCATGATTTTTGGAAAATACAGCAGCATGGAACAAACGGTGGGGTAATCTCTTCTCCAACTCCAAGCAACCCAAATGAAGAACATAAAGGAATAGTCAGCTCTGCCGCCAAATTGTTAATAGGACACAGTAGAAGTAGATAGAAATATGCTACTGCTCGATGAACTGGCGTGGATAGGATGGGGATCATGGAGAAAAATCAGAAAAAGGGGTTGAGACTTTGAGAGACCAGCTCTGAACAGTAAACTGCATCTGGATTGTGCGGCTGTGGCTTGCGGAATTTGGAGTAGGATCTA]




>consensus_4718#1
ACTCTCAAGCAAGGACCAATCTGTGTGCAGCAACTGCCAGCTAACATTTGGCTTTACGAG
GAAGAAGCACAACTGTTACAACTGTGGTTCCATGTTCTGCAATTCCTGCAGCAATAACAA
GGTTTCCAGAGCAGCTCTTGCACCAGATAGGAGCAAAAGGTACCGTGTTTGTGATGCATG
TTTCAGTCAAATGCAGAAAGTTGAGGAGCATAGAAAATTAGATCCACAACAGAAGATCCA
AAAGGATGAGGTATGTCCAATAGAAATAAGATCATATACGCCAAAATTGGCGCGCATATT
CAAGGAAGCAAATGCAATTATGGAGAAAATGGCATCAGCACAAAGCCCCCATCAGAGAAG
TCAGAATTTGGCTGTGCCAGATCATGTGAGGACATTAAGATGGGGCCTAGTAGAGTGCCC
CAGTCAATTCAGATGTGTGAGAGAGAGCATTCCTTATTGTTCAACATTGAATAAACAGAC
AGTCTCTGGTTCTATTGTACGGGTAATGAATGAGACAATGGCACCTAAACCTGCCAGCTC
TTTGCTCAAATCTGCTAATGATTCAAAAGCGGAATTAGACTTGATGGAAAATATATTATT
GGAAGAAGTGAAACAGCTTCAAGAGCAGGTAACTACTCTTGCAAAACAGTGCCGCCAAAG
GAGCCTGAAAGTTCAGCTGTACAAACGAAAAGTCGAGGAGACTTGGTTAATTGCCAAGGA
TGAGGCTGCGAAGTGCAAAGCTGCTAAAGACGTAATTAAGGTTTTGATCGATCAGCTTGA
TTTTTTATCAAAGAACCTTTTGGCTGGTGAGAAATTAGACAACTCCAGAATCATGCCTAG
CCACATCGCCAGTGCAAAATCACTAAAAGCAGAATTACCAGACCCACCTGACAAAAATGT
ATTCACCAGCGAATTTCAACAGTCGAAGAGCAACAGAGATCACCACAACAGCAGGCAGGT
GGATAGGGAATGCACACAACCTTCAATTGCTTCCATGGCGAATTACTCGGTTACGCATCA
GAATTGCAGAAGAACTTCCAACGGCAGCACCAGATGCACCGAGGGAACAGATGCCACCAC
TGCTCCTACCGATTCCAACGGTGCGATCGAGCAGATCGAGCGCGGGGTTTACGCGACAGT
GGTTACATCCCCCGGTGGGAAGAAGTGCATCAAGCGCATCCGGTTCAGTCGGAAGCACTT
TGGAGAGGATCAGGCGCAGAAATGGTGGGAAGCCAATGAGAGCATGATTTTTGGAAAATA
CAGCAGCATGGAACAAACGGTGGGGTAATCTCTTCTCCAACTCCAAGCAACCCAAATGAA
GAACATAAAGGAATAGTCAGCTCTGCCGCCAAATTGTTAATAGGACACAGTAGAAGTAGA
TAGAAATATGCTACTGCTCGATGAACTGGCGTGGATAGGATGGGGATCATGGAGAAAAAT
CAGAAAAAGGGGTTGAGACTTTGAGAGACCAGCTCTGAACAGTAAACTGCATCTGGATTG
TGCGGCTGTGGCTTGCGGAATTTGGAGTAGGATCTA

consensusID : consensus_4718#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 333
fasta sequence 
                              [CGCCACCGTCGGCAACGNNNGTGCGAGTAGCCGNAACGGGGAGGNGGAGGAGGAAACGGAGGCGGAGGGAGGCGCGCAGGCGTCTGCCCGATCAGGTCACGGCGCCGCTCTGGACCCTCCGTTGGGTTGCTTGGAGTTGGAGAAGAGATTACCCCACCGTTTGTTCCATGCTGCTGTATTTNCCAAAAATCATGCTCTCATTGGCTTCCCACCATTTCTNCGCCTGATCCTCTCCAAAGTGCTTCCGACTNCNAGATTGAAAGAGTTAGTTATTGCAAAGCGGTGGGAAAACAAGGAACATCTTTNAAAAGGTTTCGGAGGAACATNGTGAGA]

[+] EMBL C26872               [CGCCACCGTCGGCAACGNNNGTGCGAGTAGCCGNAACGGGGAGGNGGAGGAGGAAACGGAGGCGGAGGGAGGCGCGCAGGCGTCTGCCCGATCAGGTCACGGCGCCGCTCTGGACCCTCCGTTGGGTTGCTTGGAGTTGGAGAAGAGATTACCCCACCGTTTGTTCCATGCTGCTGTATTTNCCAAAAATCATGCTCTCATTGGCTTCCCACCATTTCTNCGCCTGATCCTCTCCAAAGTGCTTCCGACTNCNAGATTGAAAGAGTTAGTTATTGCAAAGCGGTGGGAAAACAAGGAACATCTTTNAAAAGGTTTCGGAGGAACATNGTGAGA]




>consensus_4718#2
CGCCACCGTCGGCAACGNNNGTGCGAGTAGCCGNAACGGGGAGGNGGAGGAGGAAACGGA
GGCGGAGGGAGGCGCGCAGGCGTCTGCCCGATCAGGTCACGGCGCCGCTCTGGACCCTCC
GTTGGGTTGCTTGGAGTTGGAGAAGAGATTACCCCACCGTTTGTTCCATGCTGCTGTATT
TNCCAAAAATCATGCTCTCATTGGCTTCCCACCATTTCTNCGCCTGATCCTCTCCAAAGT
GCTTCCGACTNCNAGATTGAAAGAGTTAGTTATTGCAAAGCGGTGGGAAAACAAGGAACA
TCTTTNAAAAGGTTTCGGAGGAACATNGTGAGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4718#0      ------------------------------AACATGATATCGGAATCCGCCTTTGCGAAG 30
consensus_4718#2      ------------------------------------------------------------
consensus_4718#1      ACTCTCAAGCAAGGACCAATCTGTGTGCAGCAACTGCCAGCTAACATTTGGCTTTACGAG 60
                                                                                  

consensus_4718#0      CGCGGCGGCGGTGAGGTGGTGTGGGCACGCCACCGTCGGCAACGACGAGGCGAGTAGCCG 90
consensus_4718#2      ---------------------------CGCCACCGTCGGCAACGNNNGTGCGAGTAGCCG 33
consensus_4718#1      GAAGAAGCACAACTGTTACAACTGTGGTTCCATGTTCTGCAATTCCTGCAGCAATAACAA 120
                                                   ***   ** ****          * ** *  

consensus_4718#0      AAAC----GGGGAGGAGGAGGAGGAAACGGAGGCGGAGGGAGGCGCGCAGGCGTCTGCGC 146
consensus_4718#2      NAAC----GGGGAGGNGGAGGAGGAAACGGAGGCGGAGGGAGGCGCGCAGGCGTCTGC-C 88
consensus_4718#1      GGTTTCCAGAGCAGCTCTTGCACCAGATAGGAGCAAAAGGTACCGTGTTTGTGA-TGCAT 179
                              * * **     * *  * *  *  **  * **   ** *   * *  ***  

consensus_4718#0      CGATCAGGTCACGGCGCCGCTCTGGACCCTCCGGAGATGTGCACCCTTCTTCAGAGCAAC 206
consensus_4718#2      CGATCAGGTCACGGCGCCGCTCTGGACCCTCCGTTGGGTTG--CTTGGAGTTGGAGAAGA 146
consensus_4718#1      GTTTCAGTCAAATGCAGAAAGTTGAGGAGCATAGAAAATTAGATCCACAACAGAAGATCC 239
                         ****   *  **       **               *              **    

consensus_4718#0      AAGCGCCCGAAGGAAAGAACCAGAAAATTAA-ATCGCGT-AATGGAGGAAGATGTCCTTT 264
consensus_4718#2      GATTACCCCACCGTTTGTTCCATGCTGCTGT-AT----T-TNCCAAAAATCATGCTCTCA 200
consensus_4718#1      AAAAGGATGA-GGTATGTCCAATAGAAATAAGATCATATACGCCAAAATTGGCGCGCATA 298
                       *       *  *   *  * *      *   **    *      *       *  *   

consensus_4718#0      TC---AGTGTTT-AT-TGGCTCCTTGAAGACA--AACAAGAAGAGCAAATCCA--TCCAA 315
consensus_4718#2      TT---GGCTTCCCAC-CATTTCTNCGCCTGAT--CCTCTCCAAAGTGCTTCCGACTNCNA 254
consensus_4718#1      TTCAAGGAAGCAAATGCAATTATGGAGAAAATGGCATCAGCACAAAGCCCCCA--TCAGA 356
                      *     *      *      *                    * *      **   *   *

consensus_4718#0      CTTAGCAAAGATGCATTGTTGGAATTGT-AGGAGAGCAAAAGAAGAATCATTGGCATAA- 373
consensus_4718#2      GATTGAAAGAGTTAGTTATTGCAAAGCG-GTGGGAAAACAAGGAACATCTTTNA-AAAG- 311
consensus_4718#1      GAAGTCAGAATTTGGCTGTGCCAGATCATGTGAGGACATTAAGATGGGGCCTAGTAGAGT 416
                            *    *    * *   *        * *   *  *  *       *   * *  

consensus_4718#0      GCATGAATATACC--ACAATGCTTTAAAAGAAGATGCAAAAGAAAAACGCTTCATGTTGC 431
consensus_4718#2      GTTTCGGAGGAAC--ATNGTGAGA------------------------------------ 333
consensus_4718#1      GCCCCAGTCAATTCAGATGTGTGAGAGAGAGCATTCCTTATTGTTCAACATTGAATAAAC 476
                      *         *        **                                       

consensus_4718#0      ATACCTGCTCGACTCCTCTAGCTGCAGGGCTCCTCCCCTCAAAGCTCCCAGCCATTGCAG 491
consensus_4718#2      ------------------------------------------------------------
consensus_4718#1      AGACAGTCTCTGGTTCTATTGTACGGGTAATGAATGAGACAATGGCACCTAAACCTGCCA 536
                                                                                  

consensus_4718#0      CCAGGAAAGACGCAGCAAAAGAAACGGAGAGCGATGCCTTGCCCCTGAGCTGAGCTCAAG 551
consensus_4718#2      ------------------------------------------------------------
consensus_4718#1      GCTCTTTGCTCAAATCTGCTAATGATTCAAAAGCGGAATTAGACTTGATGGAAAATATAT 596
                                                                                  

consensus_4718#0      TTCAAACCTCCTTTGATCAACAGTGGGAGAAAGCAAAAGATGGCAGCAAAGTGACAGAAA 611
consensus_4718#2      ------------------------------------------------------------
consensus_4718#1      TATTGGAAGAAGTGAAACAGCTTCAAGAGCAGGTAACT-ACTCTTGCAAAACAGTGCCGC 655
                                                                                  

consensus_4718#0      GAAAGAACCACGCAAGGAAAGAAGCGAAGCAAGAGAGAGGACGGACGGACGGGGGCAGAG 671
consensus_4718#2      ------------------------------------------------------------
consensus_4718#1      CAAAGGAGCCTGAAAGTTCAGCTGTACAAACGAAAAGTCGAGGAGACTTGGTTAATTGCC 715
                                                                                  

consensus_4718#0      CTTGAGGACGGACGGAGGAGGGAGAAGAAGCAGCACCGTCACTGAAGGCGACCTGCGCAA 731
consensus_4718#2      ------------------------------------------------------------
consensus_4718#1      AAGGATGAGGCTGCGAAGTGCAAAGCTGCTAAAGACGTAATTAAGGTTTTGATCGATCAG 775
                                                                                  

consensus_4718#0      TTCAGGGGCCCCGGAAAAGGAAACGGTGGCAATTTTATTAACTGCTGGGTTTAAAGATGA 791
consensus_4718#2      ------------------------------------------------------------
consensus_4718#1      CTTGATTTTTTATCAAAGAACCTTTTGGCTGGTGAGAAATTAGACAACTCCAGAATCATG 835
                                                                                  

consensus_4718#0      GAGAGGCAGGCAGTCAGTCTTCGTTCGACACAACCTGCAGAGGTAAATCCTGTTCTCCCT 851
consensus_4718#2      ------------------------------------------------------------
consensus_4718#1      CCTAGCCACATCGCCAGTGCAAAATCACTAAAAGCAGAATTACCAGACCCACCTGACAAA 895
                                                                                  

consensus_4718#0      TTTGATTCTGCGCCCCTCGCTTTCCGTATATTTTCTCTTGGGTAGTGCTAGTGCGGCATC 911
consensus_4718#2      ------------------------------------------------------------
consensus_4718#1      AATGTATTCACCAGCGAATTTCAACAGTCGAAGAGCAACAGAGATCACCACAACAGCAGG 955
                                                                                  

consensus_4718#0      TCTCTGTAGTTTGTGACTTCGAGTGTACCGAACAGCAGTGGCATTTAGCTTTCCTCTGTT 971
consensus_4718#2      ------------------------------------------------------------
consensus_4718#1      CAGGTGGATAGGGAATGCACACAACCTTCAATTGCTTCCATGGCGAATTACTCGGTTACG 1015
                                                                                  

consensus_4718#0      AGCGTGAGTAGGCGCTCAGAAATCTTGGATTTCATGTCAAATCTCAGGATTTGCCACAAC 1031
consensus_4718#2      ------------------------------------------------------------
consensus_4718#1      CATCAGAATTGCAGAAGAACTTCCAACGGCAGCACCAGATGCACCGAGGGAACAGATGCC 1075
                                                                                  

consensus_4718#0      TGCATGCCACAAGCCCCGGAAAACCTGGTCACTGCCTTCCTTTTCCCTAGCATCTCTTCA 1091
consensus_4718#2      ------------------------------------------------------------
consensus_4718#1      ACCACTGCTCCTACCGATTCCAACGGTGCGATCGAGCAGATCGAGCGCGGGGTTTACGCG 1135
                                                                                  

consensus_4718#0      TCAGTCGGTACATTAAACTACCTCAGTTTTGCTGAAAATCTTGCATAATTGGATCATCCG 1151
consensus_4718#2      ------------------------------------------------------------
consensus_4718#1      ACAGTGGTTACATCCCCCGGTGGGAAGAAGTGCATCAAGCGCATCCGGTTCAGTCGGAAG 1195
                                                                                  

consensus_4718#0      ATCTCTGATTACCATGATCAGCATTTCTCAAAGAATGCATCGAATAACAGAATTACTCCA 1211
consensus_4718#2      ------------------------------------------------------------
consensus_4718#1      CACTTTGGAGAGGATCAGGCGCAGAAATGGTGGGAAGCCAATGAGAGCATGATTTTTGGA 1255
                                                                                  

consensus_4718#0      C--TACCGTAACAACCTTACATTGTTTAAAATTCACGGGCATCCGATCTGTCTAGGGTGG 1269
consensus_4718#2      ------------------------------------------------------------
consensus_4718#1      AAATACAGCAGCATGGAACAAACGGTGGGGTAATCTCTTCTCCAACTCCAAGCAACCCAA 1315
                                                                                  

consensus_4718#0      CCAGTTAACCATCCTTGGCTCCTTGCCCAGCTGTGGTCCAGAAACGTGGTACTAGTATCG 1329
consensus_4718#2      ------------------------------------------------------------
consensus_4718#1      ATGAAGAACATAAAGGAATAGTCAGCTCTGCCGCCAAATTGTTAATAGGACACAGTAGAA 1375
                                                                                  

consensus_4718#0      TGATCATGAGTTTGGACGTTTTAGATAGTAATGAGGTTGGATTTGCAGAGGCAAGCATCC 1389
consensus_4718#2      ------------------------------------------------------------
consensus_4718#1      GTAGATAGAAATATGCTACTGCTCGATGAACTGGCGTGGATAGGATGGGGATCATGGAGA 1435
                                                                                  

consensus_4718#0      ACGCACTGCTGTTAGGATTTTGGGACAGCACATGATGGTCCGAAAGAAGAGACGATGGAG 1449
consensus_4718#2      ------------------------------------------------------------
consensus_4718#1      AAAATCAGAAAAAGGGGTTGAGACTTTGAGAGACCAGCTCTGAACAGTAAACTGCATCTG 1495
                                                                                  

consensus_4718#0      GGGGGTAGTGATGCAGCACGTGTGCAGCGTAGGCAGGCGCTGCCCCCGTTCTGGCCTGCA 1509
consensus_4718#2      ------------------------------------------------------------
consensus_4718#1      GATTGTGCGGCTGTGGCTTGCGGAATTTGGAGTAGGATCTA------------------- 1536
                                                                                  

consensus_4718#0      CAACTGTTTGGTCACTCCTGTCTGCAAATGATGCCGTCTCGGTCGCTTTTGCTGACTTGA 1569
consensus_4718#2      ------------------------------------------------------------
consensus_4718#1      ------------------------------------------------------------
                                                                                  

consensus_4718#0      TCTTGCTGGGGTACGTTTTTTCTCTCCCTTTTTCTCCAACGAGCAGCGATCGTGACGTCT 1629
consensus_4718#2      ------------------------------------------------------------
consensus_4718#1      ------------------------------------------------------------
                                                                                  

consensus_4718#0      TCGTAGCTCATAATTTCGTATTCTACCTTTCGTCTCCCCAGTACTGTATGTATCAGTATC 1689
consensus_4718#2      ------------------------------------------------------------
consensus_4718#1      ------------------------------------------------------------
                                                                                  

consensus_4718#0      ACTGCCTACAAATGTACTATGTCTACCGGTGCTACGTGCATTTATGCGCTCACCTTTGCT 1749
consensus_4718#2      ------------------------------------------------------------
consensus_4718#1      ------------------------------------------------------------
                                                                                  

consensus_4718#0      CACGACATGTCTATTCATTGCGCATTTATCCTATTGCAGTCGTACTGTGATCAGTTGTAC 1809
consensus_4718#2      ------------------------------------------------------------
consensus_4718#1      ------------------------------------------------------------
                                                                                  

consensus_4718#0      TGCTGGTGCTGCTTTGGTCGTGTGCATCCCCAAGGATTTTCTGCGGTGTCCACTGATCAG 1869
consensus_4718#2      ------------------------------------------------------------
consensus_4718#1      ------------------------------------------------------------
                                                                                  

consensus_4718#0      CTGGAAGTGAAAAGATGGATGGTGGGGAAGAAAAGGTAGAGAAGGCAAGTAGGCATGTGA 1929
consensus_4718#2      ------------------------------------------------------------
consensus_4718#1      ------------------------------------------------------------
                                                                                  

consensus_4718#0      AAGCACCAACGAGACAAGCATGACGGGCCAAGGGAAAAGATAAAACTTGTCCTGCCTCCT 1989
consensus_4718#2      ------------------------------------------------------------
consensus_4718#1      ------------------------------------------------------------
                                                                                  

consensus_4718#0      CAACAGCAGTAAATGTGTTGATTTGTTCCCCTTGCATTTCCCGTGTAGCGTCATGGCATT 2049
consensus_4718#2      ------------------------------------------------------------
consensus_4718#1      ------------------------------------------------------------
                                                                                  

consensus_4718#0      GGCAGTAACTCGTGGACGATTTCTCTAGCGATTGTTACCCGCTGTTCATGCTCAAAATGG 2109
consensus_4718#2      ------------------------------------------------------------
consensus_4718#1      ------------------------------------------------------------
                                                                                  

consensus_4718#0      CACCATAATCTTATACACAGCCCTACTCTTGTTCTGCAGCTATTTGCACTTGTTCTGCAC 2169
consensus_4718#2      ------------------------------------------------------------
consensus_4718#1      ------------------------------------------------------------
                                                                                  

consensus_4718#0      CTACGGTCTCAAAAAAGGCATATTTGTATGCCTCCTACACGGGTAAAAACAGGTGCAGCA 2229
consensus_4718#2      ------------------------------------------------------------
consensus_4718#1      ------------------------------------------------------------
                                                                                  

consensus_4718#0      AATAGTACCAGTAAGTCCAAATTAACCCTTTTATTACTGTGGATGAGACAAAATGTAGGA 2289
consensus_4718#2      ------------------------------------------------------------
consensus_4718#1      ------------------------------------------------------------
                                                                                  

consensus_4718#0      GCTAGCTGTCTGCTGGCATGTGGAGTGACTGGAAGGCATGGCATGTGAAACTTGTGAAGC 2349
consensus_4718#2      ------------------------------------------------------------
consensus_4718#1      ------------------------------------------------------------
                                                                                  

consensus_4718#0      CATACAGTAC 2359
consensus_4718#2      ----------
consensus_4718#1      ----------


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)