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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4720#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1469 fasta sequence
[CCGATGACACCGCTGCCGCGCCAATGCCTCCTCGCACGCTCCTGTCGCCGCTATAGCACATGCTACGGAAGCCGCTACGCCTCCCACCACCTACCTGCAAATCGTGCGCTAGCTGCCGCCGTGCGCCTTCTCTCATCGCAAATCACGTCATCCCACCGCAGATCGCAGCCTCCCCCGCCAGCGTCGAGGTGAGAGCGCGCTTCCTGCCGTCCTACTCCGATGTGAAAAGGATCTGCTTACCCTCCTACCTGGTGTTGTTCCTCAATCTTCGCGGCAGCGTCCTCAGTCGTTGCTTCTCTGCCGGCCGCGGTGGCGCCTGCTCTTCCTTCAATCTCTCGGTTCATAACCCATGGTTCAGACTCCTCAGCCCACCGACAAGCCATCCATCTCCACCAAGAAGATGAAGGACGCTTGATTTGGCCGCCTGGCTTTGATTTGCCCGTCGATCATCCGTTGCAGGGTCAATCGTGGATACAATACTTTTTATCTGAACAAATATTGGCCTTTTGCTTTTTTGTGTGTTGATTTTCAATATGCATTTGTGTTTTATCTTCAAATTATGTGGCGAATTGTAATCCATGGGAATCTCTTAAACTGTTGATAGAATTGCTGATGCTAATTCCCTTTGCGTGAGTTGCAGGTGTTCAGCAAAATCCTGCTTAGGTACTGTCTATTGCAAGCAATTTGATCCATTGTGTTCTCCTTTCTTCACGAATTCAGGGTGCAGTCCAGTTTGCTGACACTAAACACTTCAATGTTGTACATAGTTCATACTCTTTCTCTGCAGGTGGTCACTTATTTCTACCTTTCTCTGTCTACTAAAATGGATAGCGCCACTGGAAGCTCCACACCAAATCCAGCGGATTGAACAGGCCTCCAGCGTTGTTTCCAGGGCGAAGTGATTTATCTGCCACTAGCAGTCTTCGTTTGTTTCATTCCTTGTGATGATCTGTGCCTGAGAAGTCCTCCACTTCTCCCTACTATTATGTCAGGTTGACATTGTAGACAACAACTGAATATTTTGCTAAAATCTTGTCATGGTTTACCATGGCATTTCACTGTTTGGTACACTGTTTTTAAGAGCTATTACTACAGTATATATTGGAACCTTGAGAATACTCGACCCCTTGCTGCATATATACATCATGATGACGTCCAATTATGTGTTGCTCAACCCTGAAGAGAAAACCGACAAGATAATTGTGCAGGTCTACATGCTTTTGCTAACTGTGTGTTTGATAATTAGTCATGTCATGGTATAAGTCATTTCTTTGGCACATATACCAGCAGAAATGCAGGTGTTGCTGCTAAGTAACATCAGGGGTGCTAGAGCTTGGTCAAGATGCCTGGTGGCGGAGCTGATGATTTGGAGGCTTGGAGCAAACATATAGTGTGCTGACGATGACCCTGTATGCATGATTCCTATCGAGTAAATTTCTCCTTCGACAACCTTTTATTATCGATGTTTC]
[+] EMBL AK108648 [CCGATGACACCGCTGCCGCGCCAATGCCTCCTCGCACGCTCCTGTCGCCGCTATAGCACATGCTACGGAAGCCGCTACGCCTCCCACCACCTACCTGCAAATCGTGCGCTAGCTGCCGCCGTGCGCCTTCTCTCATCGCAAATCACGTCATCCCACCGCAGATCGCAGCCTCCCCCGCCAGCGTCGAGGTGAGAGCGCGCTTCCTGCCGTCCTACTCCGATGTGAAAAGGATCTGCTTACCCTCCTACCTGGTGTTGTTCCTCAATCTTCGCGGCAGCGTCCTCAGTCGTTGCTTCTCTGCCGGCCGCGGTGGCGCCTGCTCTTCCTTCAATCTCTCGGTTCATAACCCATGGTTCAGACTCCTCAGCCCACCGACAAGCCATCCATCTCCACCAAGAAGATGAAGGACGCTTGATTTGGCCGCCTGGCTTTGATTTGCCCGTCGATCATCCGTTGCAGGGTCAATCGTGGATACAATACTTTTTATCTGAACAAATATTGGCCTTTTGCTTTTTTGTGTGTTGATTTTCAATATGCATTTGTGTTTTATCTTCAAATTATGTGGCGAATTGTAATCCATGGGAATCTCTTAAACTGTTGATAGAATTGCTGATGCTAATTCCCTTTGCGTGAGTTGCAGGTGTTCAGCAAAATCCTGCTTAGGTACTGTCTATTGCAAGCAATTTGATCCATTGTGTTCTCCTTTCTTCACGAATTCAGGGTGCAGTCCAGTTTGCTGACACTAAACACTTCAATGTTGTACATAGTTCATACTCTTTCTCTGCAGGTGGTCACTTATTTCTACCTTTCTCTGTCTACTAAAATGGATAGCGCCACTGGAAGCTCCACACCAAATCCAGCGGATTGAACAGGCCTCCAGCGTTGTTTCCAGGGCGAAGTGATTTATCTGCCACTAGCAGTCTTCGTTTGTTTCATTCCTTGTGATGATCTGTGCCTGAGAAGTCCTCCACTTCTCCCTACTATTATGTCAGGTTGACATTGTAGACAACAACTGAATATTTTGCTAAAATCTTGTCATGGTTTACCATGGCATTTCACTGTTTGGTACACTGTTTTTAAGAGCTATTACTACAGTATATATTGGAACCTTGAGAATACTCGACCCCTTGCTGCATATATACATCATGATGACGTCCAATTATGTGTTGCTCAACCCTGAAGAGAAAACCGACAAGATAATTGTGCAGGTCTACATGCTTTTGCTAACTGTGTGTTTGATAATTAGTCATGTCATGGTATAAGTCATTTCTTTGGCACATATACCAGCAGAAATGCAGGTGTTGCTGCTAAGTAACATCAGGGGTGCTAGAGCTTGGTCAAGATGCCTGGTGGCGGAGCTGATGATTTGGAGGCTTGGAGCAAACATATAGTGTGCTGACGATGACCCTGTATGCATGATTCCTATCGAGTAAATTTCTCCTTCGACAACCTTTTATTATCGATGTTTC]
consensusID : consensus_4720#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1025 fasta sequence
[CAAATCACTGATTCCCCATCCCCACCGAGCGGACGCGCGATTCTAGCGCAGAAACACCGCCTCTAAGCGCTATCCCTGCCGCTAGACACAGCCCGATGACACCGCTGCCGCGCCATGCCTCCTCGCACGCTCCTGTCGCCGCTATAGCACATGCTACGGAAGCCGCTACGCCTCCCACCACCTACCTGCAAATCGTGCGCTAGCTGCCGCCGTGCGCCTTCTCTCATCGCAAATCACGTCATCCCACCGCAGATCGCAGCCTCCCCCGCCAGCGTCGAGGGTGCAGTCCAGTTTGCTGACACTAAACACTTCAATGTTGTACATAGTTCATACTCTTTCTCTGCAGGTGGTCACTTATTTCTACCTTTCTCTGTCTACTAAAATGGATAGCGCCACTGGAAGCTCCACACCAAATCCAGCGGATTGAACAGGCCTCCAGCGTTGTTTCCA-GGCGAAGTGATTTATCTGCCACTAGCAGTCTTCGTTTGTTTCATTCCTTGTGATGATCTGTGCCTGAGAAGTCCTCCACTTCTCCCTACTA-TTATGTCAGGTTGACATTGTAGACAACAACTGAATATTTTGCTAAAATCTTGTCATGGTTTACCATGGCATTTCACTGTTTGGTACACTGTTTTTAAGAGCTATTACTACAGTATATATTGGAACCTTGAGAATACTCGACCCCTTGCTGCATATATACATCATGATGACGTCCAATTATGTGTTGCTCAACCCTGAAGAGAAAACCGACAAGATAATTGTGCAGGTCTACATGCTTTTGCTAACTGTGTGTTTGATAATTAGTCATGTCATGGTATAAGTCATTTCTTTGGCACATATACCAGCAGAAATGCAGGTGTTGCTGCTAAGTAACATCAGGGGTGCTAGAGCTTGGTCAAGATGCCTGGTGGCGGAGCTGATGATTTGGAGGCTTGGAGCAAACATATAGTGTGCTGACGATGACCCTGTAATTTTACCTTTGTGGCATTTTAGACTACCCTCAACTTTTTCAACCACCTAAAAAA]
[+] EMBL CF329151 [CAAATCACTGATTCCCCATCCCCACCGAGCGGACGCGCGATTCTAGCGCAGAAACACCGCCTCTAAGCGCTATCCCTGCCGCTAGACACAGCCCGATGACACCGCTGCCGCGCCATGCCTCCTCGCACGCTCCTGTCGCCGCTATAGCACATGCTACGGAAGCCGCTACGCCTCCCACCACCTACCTGCAAATCGTGCGCTAGCTGCCGCCGTGCGCCTTCTCTCATCGCAAATCACGTCATCCCACCGCAGATCGCAGCCTCCCCCGCCAGCGTCGAGGGTGCAGTCCAGTTTGCTGACACTAAACACTTCAATGTTGTACATAGTTCATACTCTTTCTCTGCAGGTGGTCACTTATTTCTACCTTTCTCTGTCTACTAAAATGGATAGCGCCACTGGAAGCTCCACACCAAATCCAGCGGATTGAACAGGCCTCCAGCGTTGTTTCCA GGCGAAGTGATTTATCTGCCACTAGCAGTCTTCGTTTGTTTCATTCCTTGTGATGATCTGTGCCTGAGAAGTCCTCCACTTCTCCCTACTA TTATGTCAGGTTGACATTGTAGACAACAACTGAATATTTTGCTAAA ]
[-] EMBL CF329152 [ CCAGGGCGAAGTGATTTATCTGCCACTAGCAGTCTTCGTTTGTTTCATTCCTTGTGATGATCTGTGCCTGAGAAGTCCTCCACTTCT CCTACTANTTATGTCAGGTTGACATTGTAGACAACAACTGAATATTTTGCTAAAATCTTGTCATGGTTTACCATGGCATTTCACTGTTTGGTACACTGTTTTTAAGAGCTATTACTACAGTATATATTGGAACCTTGAGAATACTCGACCCCTTGCTGCATATATACATCATGATGACGTCCAATTATGTGTTGCTCAACCCTGAAGAGAAAACCGACAAGATAATTGTGCAGGTCTACATGCTTTTGCTAACTGTGTGTTTGATAATTAGTCATGTCATGGTATAAGTCATTTCTTTGGCACATATACCAGCAGAAATGCAGGTGTTGCTGCTAAGTAACATCAGGGGTGCTAGAGCTTGGTCAAGATGCCTGGTGGCGGAGCTGATGATTTGGAGGCTTGGAGCAAACATATAGTGTGCTGACGATGACCCTGTAATTTTACCTTTGTGGCATTTTAGACTACCCTCAACTTTTTCAACCACCTAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4720#0 CCGATGACACCGCTGCCGCGCCAATGCCTCCTCGCACGCTCCTGTCGCCGCTATAGCACA 60
consensus_4720#1 ------------------------------------------------------------
consensus_4720#0 TGCTACGGAAGCCGCTACGCCTCCCACCACCTACCTGCAAATCGTGCGCTAGCTGCCGCC 120
consensus_4720#1 ------------------------------------------------------------
consensus_4720#0 GTGCGCCTTCTCTCATCGCAAATCACGTCATCCCACCGCAGATCGCAGCCTCCCCCGCCA 180
consensus_4720#1 ------------------------------------------------------------
consensus_4720#0 GCGTCGAGGTGAGAGCGCGCTTCCTGCCGTCCTACTCCGATGTGAAAAGGATCTGCTTAC 240
consensus_4720#1 ------------------------------------------------------------
consensus_4720#0 CCTCCTACCTGGTGTTGTTCCTCAATCTTCGCGGCAGCGTCCTCAGTCGTTGCTTCTCTG 300
consensus_4720#1 ------------------------------------------------------------
consensus_4720#0 CCGGCCGCGGTGGCGCCTGCTCTTCCTTCAATCTCTCGGTTCATAACCCATGGTTCAGAC 360
consensus_4720#1 ------------------------------------------------------------
consensus_4720#0 TCCTCAGCCCACCGACAAGCCATCCATCTCCACCAAGAAGATGAAGGACGCTTGATTTGG 420
consensus_4720#1 --------------------------------------------CAAATCACTGATTCCC 16
* *****
consensus_4720#0 CCGCCTGGCTTTGATTTGCCCGTCGATCATCCGTTGCAGGGTCAATCGTGGATACAATAC 480
consensus_4720#1 CATCCCCACC--GAGCGGACGCGCGAT--TCTAGCGCAGAAACA-CCGCCTCTA-AGCGC 70
* ** * ** * * **** ** **** ** ** ** * *
consensus_4720#0 TTTTTATCTGAACAAATATTGGCCTTTTGCTTTTTTGT-GTGTTGATTTTCAATATGCAT 539
consensus_4720#1 TATCCCTGCCGCTAGACACAGCCCGATGACACCGCTGCCGCGCCATGCCTCCTCGCACGC 130
* * * * * * * ** * * ** * * ** *
consensus_4720#0 TTGTGTTTTATCTTCAAATTATGTGGCGAATTGTAATCCATGGGAATCTCTTAAACTGTT 599
consensus_4720#1 TCCTGTCGCCGCTATAGCACATGCTACGGA----AGCCGCTACGCCTCCCACCACCTACC 186
* *** ** * *** ** * * * * * ** * * **
consensus_4720#0 GATAGAATTGCTGATGCTAATTCCCTTTGCGTGAGTTGCAGGTGTTCAGCAAAATCCTGC 659
consensus_4720#1 TGCA-AATCGT--GCGCTAGCTGCCGCCGTGCGCCTT-----CTCTCATCGCAAATCACG 238
* *** * **** * ** * * * ** *** * ** *
consensus_4720#0 TTAGGTACTGTCTATTGCAAGCAATTTGATCCATTGTGTTCTCCTTTCTTCACGAATTCA 719
consensus_4720#1 TCAT------CCCACCGCAG------------ATCGCAGCCTCCCCCGCCAGCG--TCGA 278
* * * * *** ** * **** ** * *
consensus_4720#0 GGGTGCAGTCCAGTTTGCTGACACTAAACACTTCAATGTTGTACATAGTTCATACTCTTT 779
consensus_4720#1 GGGTGCAGTCCAGTTTGCTGACACTAAACACTTCAATGTTGTACATAGTTCATACTCTTT 338
************************************************************
consensus_4720#0 CTCTGCAGGTGGTCACTTATTTCTACCTTTCTCTGTCTACTAAAATGGATAGCGCCACTG 839
consensus_4720#1 CTCTGCAGGTGGTCACTTATTTCTACCTTTCTCTGTCTACTAAAATGGATAGCGCCACTG 398
************************************************************
consensus_4720#0 GAAGCTCCACACCAAATCCAGCGGATTGAACAGGCCTCCAGCGTTGTTTCCAGGGCGAAG 899
consensus_4720#1 GAAGCTCCACACCAAATCCAGCGGATTGAACAGGCCTCCAGCGTTGTTTCCAGG-CGAAG 457
****************************************************** *****
consensus_4720#0 TGATTTATCTGCCACTAGCAGTCTTCGTTTGTTTCATTCCTTGTGATGATCTGTGCCTGA 959
consensus_4720#1 TGATTTATCTGCCACTAGCAGTCTTCGTTTGTTTCATTCCTTGTGATGATCTGTGCCTGA 517
************************************************************
consensus_4720#0 GAAGTCCTCCACTTCTCCCTACTATTATGTCAGGTTGACATTGTAGACAACAACTGAATA 1019
consensus_4720#1 GAAGTCCTCCACTTCTCCCTACTATTATGTCAGGTTGACATTGTAGACAACAACTGAATA 577
************************************************************
consensus_4720#0 TTTTGCTAAAATCTTGTCATGGTTTACCATGGCATTTCACTGTTTGGTACACTGTTTTTA 1079
consensus_4720#1 TTTTGCTAAAATCTTGTCATGGTTTACCATGGCATTTCACTGTTTGGTACACTGTTTTTA 637
************************************************************
consensus_4720#0 AGAGCTATTACTACAGTATATATTGGAACCTTGAGAATACTCGACCCCTTGCTGCATATA 1139
consensus_4720#1 AGAGCTATTACTACAGTATATATTGGAACCTTGAGAATACTCGACCCCTTGCTGCATATA 697
************************************************************
consensus_4720#0 TACATCATGATGACGTCCAATTATGTGTTGCTCAACCCTGAAGAGAAAACCGACAAGATA 1199
consensus_4720#1 TACATCATGATGACGTCCAATTATGTGTTGCTCAACCCTGAAGAGAAAACCGACAAGATA 757
************************************************************
consensus_4720#0 ATTGTGCAGGTCTACATGCTTTTGCTAACTGTGTGTTTGATAATTAGTCATGTCATGGTA 1259
consensus_4720#1 ATTGTGCAGGTCTACATGCTTTTGCTAACTGTGTGTTTGATAATTAGTCATGTCATGGTA 817
************************************************************
consensus_4720#0 TAAGTCATTTCTTTGGCACATATACCAGCAGAAATGCAGGTGTTGCTGCTAAGTAACATC 1319
consensus_4720#1 TAAGTCATTTCTTTGGCACATATACCAGCAGAAATGCAGGTGTTGCTGCTAAGTAACATC 877
************************************************************
consensus_4720#0 AGGGGTGCTAGAGCTTGGTCAAGATGCCTGGTGGCGGAGCTGATGATTTGGAGGCTTGGA 1379
consensus_4720#1 AGGGGTGCTAGAGCTTGGTCAAGATGCCTGGTGGCGGAGCTGATGATTTGGAGGCTTGGA 937
************************************************************
consensus_4720#0 GCAAACATATAGTGTGCTGACGATGACCCTGTATGCATGATTCCTATCGAGTAAATTTCT 1439
consensus_4720#1 GCAAACATATAGTGTGCTGACGATGACCCTGTA---ATTTTACCTTTGTGGCATTTTAGA 994
********************************* ** * *** * * * **
consensus_4720#0 CCTTCGACAACCTTTT--ATTATCGATGTTTC 1469
consensus_4720#1 CTACCCTCAACTTTTTCAACCACCTAAAAAA- 1025
* * **** **** * * * *
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||