cluster # 4734

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Oryza sativa
cluster # 4734 cluster # 4734 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4734#0 length = 512 sequences # 2

consensus_4734#1 length = 320 sequences # 1

consensusID : consensus_4734#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 512
fasta sequence

                              [GGGGTAACTGGGGATCTAGTGGTTCTGGTGATGGCAGTGGTGCTGGCTCTGGCTCTAGTTCGGCCAACACATACTATGGTGGACCGAGTTACGCGAATGCTGATGCTAATGGTAATGGTAATGGTAAAGGCACCGGTACATATGGTGGGAGCGGTGGTGGCCAAGGTACCGGTTCTGGATATGGTGATGCCAGCCCATAATTCTCCTCACCATCCAACCAAAATACACTTGAATAGAGCCTAATGTGTAATATTGTATTTTGAAGTTATAGTATTTTTTTCTTTATTTGTACTCTTTTATGTCTAGCAAGAAATAAAGGGCTCTATTATTTTGGTAAAAAAACTAAAGTCTGTATTGATGACTTGTGTGGGTGGGCGTGGTTAAGATTGTGTTATTGTTCTCAGCATTCATCAGTGAATATGAATGGACATTTCTCCACCCAAAANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANNANAAAAACAAAAAAAAAA]

[+] EMBL AU082707             [GGGGTAACTGGGGATCTAGTGGTTCTGGTGATGGCAGTGGTGCTGGCTCTGGCTCTAGTTCGGCCAACACATACTATGGTGGACCGAGTTACGCGAATGCTGATGCTAATGGTAATGGTAATGGTAAAGGCACCGGTACATATGGTGGGAGCGGTGGTGGCCAAGGTACCGGTTCTGGATATGGTGATGCCAGCCCATAATTCTCCTCACCATCCAACCAAAATACACTTGAATAGAGCCTAATGTGTAATATTGTATTTTGAAGTTATAGTATTTTTTTCTTTATTTGTACTCTTTTATGTCTAGCAAGAAATAAAGGGCTCTATTATTTTGGTAAAAAAA                                                                                                                                                                          ]
[+] EMBL CA757411             [                                                                                            GCGAATGCTGATGCTAATGGTAATGGTAATGGTAAAGGCACCGGTACATATGGTGGGAGCGGTGGTGGCCAAGGTACTGGTTCTGGATATGGTGATGCCAGCCCATAATTCTCCTCACCATCCAACCAAAATACACTTGAATAGAGCCTAATGTGTAATATTGTATTTTGAAGTTATAGTATTTTTTTCTTTATTTGTACTCTTTTATGTCTAGCAAGAAATAAAGGGCTCTATTATTTTGGTAAACGTGCTAAAGTCTGTATTGATGACTTGTGTGGGTGGGCGTGGTTAAGATTGTGTTATTGTTCTCAGCATTCATCAGTGAATATGAATGGACATTTCTCCACCCAAAANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANNANAAAAACAAAAAAAAAA]




>consensus_4734#0
GGGGTAACTGGGGATCTAGTGGTTCTGGTGATGGCAGTGGTGCTGGCTCTGGCTCTAGTT
CGGCCAACACATACTATGGTGGACCGAGTTACGCGAATGCTGATGCTAATGGTAATGGTA
ATGGTAAAGGCACCGGTACATATGGTGGGAGCGGTGGTGGCCAAGGTACCGGTTCTGGAT
ATGGTGATGCCAGCCCATAATTCTCCTCACCATCCAACCAAAATACACTTGAATAGAGCC
TAATGTGTAATATTGTATTTTGAAGTTATAGTATTTTTTTCTTTATTTGTACTCTTTTAT
GTCTAGCAAGAAATAAAGGGCTCTATTATTTTGGTAAAAAAACTAAAGTCTGTATTGATG
ACTTGTGTGGGTGGGCGTGGTTAAGATTGTGTTATTGTTCTCAGCATTCATCAGTGAATA
TGAATGGACATTTCTCCACCCAAAANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAANNANAAAAACAAAAAAAAAA

consensusID : consensus_4734#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 320
fasta sequence

                              [ACCCATATTATGGTGGCCCGAGTTACCCGAATGCTGATGCTAATGGTAATGGTAATGGTAAAGGCCCCGGTCCATATGGTGGGAGCGGTGGTGGCCAAGGTACTGGTTTTGGATATGGTGATGCCAGCCCATAATTTTCCTCCCCCTCCCCCCAAAATACCCTTGAATAGAGCCTAATGTGTAATATTGTATTTTGAAGTTAAAGTATTTTTTTCTTTATTTGGACTCTTTTATGTCTAGCAAAAAATAAAGGGGCTTTTTTTTTTTGGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACT]

[-] EMBL CA758226             [ACCCATATTATGGTGGCCCGAGTTACCCGAATGCTGATGCTAATGGTAATGGTAATGGTAAAGGCCCCGGTCCATATGGTGGGAGCGGTGGTGGCCAAGGTACTGGTTTTGGATATGGTGATGCCAGCCCATAATTTTCCTCCCCCTCCCCCCAAAATACCCTTGAATAGAGCCTAATGTGTAATATTGTATTTTGAAGTTAAAGTATTTTTTTCTTTATTTGGACTCTTTTATGTCTAGCAAAAAATAAAGGGGCTTTTTTTTTTTGGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACT]




>consensus_4734#1
ACCCATATTATGGTGGCCCGAGTTACCCGAATGCTGATGCTAATGGTAATGGTAATGGTA
AAGGCCCCGGTCCATATGGTGGGAGCGGTGGTGGCCAAGGTACTGGTTTTGGATATGGTG
ATGCCAGCCCATAATTTTCCTCCCCCTCCCCCCAAAATACCCTTGAATAGAGCCTAATGT
GTAATATTGTATTTTGAAGTTAAAGTATTTTTTTCTTTATTTGGACTCTTTTATGTCTAG
CAAAAAATAAAGGGGCTTTTTTTTTTTGGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAACT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4734#0      GGGGTAACTGGGGATCTAGTGGTTCTGGTGATGGCAGTGGTGCTGGCTCTGGCTCTAGTT 60
consensus_4734#1      ------------------------------------------------------------
                                                                                  

consensus_4734#0      CGGCCAACACATACTATGGTGGACCGAGTTACGCGAATGCTGATGCTAATGGTAATGGTA 120
consensus_4734#1      ------ACCCATATTATGGTGGCCCGAGTTACCCGAATGCTGATGCTAATGGTAATGGTA 54
                            ** **** ******** ********* ***************************

consensus_4734#0      ATGGTAAAGGCACCGGTACATATGGTGGGAGCGGTGGTGGCCAAGGTACCGGTTCTGGAT 180
consensus_4734#1      ATGGTAAAGGCCCCGGTCCATATGGTGGGAGCGGTGGTGGCCAAGGTACTGGTTTTGGAT 114
                      *********** ***** ******************************* **** *****

consensus_4734#0      ATGGTGATGCCAGCCCATAATTCTCCTCACCATCCAACCAAAATACACTTGAATAGAGCC 240
consensus_4734#1      ATGGTGATGCCAGCCCATAATTTTCCTCCCCCTCCCCCCAAAATACCCTTGAATAGAGCC 174
                      ********************** ***** ** ***  ********* *************

consensus_4734#0      TAATGTGTAATATTGTATTTTGAAGTTATAGTATTTTTTTCTTTATTTGTACTCTTTTAT 300
consensus_4734#1      TAATGTGTAATATTGTATTTTGAAGTTAAAGTATTTTTTTCTTTATTTGGACTCTTTTAT 234
                      **************************** ******************** **********

consensus_4734#0      GTCTAGCAAGAAATAAAGGG-CTCTATTATTTTGGTAAAAAAACTAAAGTCTGTATTGAT 359
consensus_4734#1      GTCTAGCAAAAAATAAAGGGGCTTTTTTTTTTTGGTTAAAAAAAAAAAA---AAAAAAAA 291
                      ********* ********** ** * ** ******* ******  ***      *   * 

consensus_4734#0      GACTTGTGTGGGTGGGCGTGGTTAAGATTGTGTTATTGTTCTCAGCATTCATCAGTGAAT 419
consensus_4734#1      AAAAAAAAAAAAAAAAAAAAAAAAAAACT------------------------------- 320
                       *                     ** * *                               

consensus_4734#0      ATGAATGGACATTTCTCCACCCAAAANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 479
consensus_4734#1      ------------------------------------------------------------
                                                                                  

consensus_4734#0      AAAAAAAAAAAAANNANAAAAACAAAAAAAAAA 512
consensus_4734#1      ---------------------------------