cluster # 4800

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Oryza sativa
cluster # 4800 cluster # 4800 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4800#0 length = 779 sequences # 2

consensus_4800#1 length = 675 sequences # 1

consensusID : consensus_4800#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 779
fasta sequence

                              [TAAAAAACGGAGGTAGTATTTATTTTTATTCTTAGAGGTAATAGTATGCACACAAACTGAGCAGGTATTCTTTTCAGGCTCTTTTGAAGAGGTTAGGTGTTTTTATGTGATCTCTGCAAATTATTGATTCTATAATGAGGTTGCGTAAATATGAAGTATGATATTATCTAGATTCCAATTACATTGTGGGACATAGTAATTCTCATTGCTATTGTAGGCCATAGTGTATTGATTCCTGTGCATCGCTTCTTTCTGGAGTTCAGTTACCACGTTGGTGCTTCATATGCAACAGCATGGACCAATTTACTATGCCATGTCCTAAGAAGGTTTGTGCATGACAAGAAGGTATCTAAGATAACACTCTTTCGTTAATGCCAACTGTTAAACATAGAAATCAAAGTAATTTATTTTGCTACCATTTCCTTTAGGTGGCACTCACATATTGTTCAATTGTACTGGGGACATTAGGCTTTATTACTGTTATTGGGATCAATCAGATATGCGTTTTCTGCTGGTTTTGCTCATGGCTATGTACACAAGAAATTTTAGATTATAAAATAAATATGATGGACCAATGTTTCCAGCTACTACTTCCGGTGTACATCCTTTTTTATTATGTGTCACTTCAGATTTGGTCTTTGTTCAAACCTGCCTATAATATCAACAAGAACTAAAACTGAAAGATTTCAACAAGAATCATGTACTTGCAAAACCATTGTTCAAAATCCAAGATTTCATCCCTGAAGTGTTCGTTTAAAAGTTAAGGCAATTTTCTGTTC]

[+] EMBL AK071449             [TAAAAAACGGAGGTAGTATTTATTTTTATTCTTAGAGGTAATAGTATGCACACAAACTGAGCAGGTATTCTTTTCAGGCTCTTTTGAAGAGGTTAGGTGTTTTTATGTGATCTCTGCAAATTATTGATTCTATAATGAGGTTGCGTAAATATGAAGTATGATATTATCTAGATTCCAATTACATTGTGGGACATAGTAATTCTCATTGCTATTGTAGGCCATAGTGTATTGATTCCTGTGCATCGCTTCTTTCTGGAGTTCAGTTACCACGTTGGTGCTTCATATGCAACAGCATGGACCAATTTACTATGCCATGTCCTAAGAAGGTTTGTGCATGACAAGAAGGTATCTAAGATAACACTCTTTCGTTAATGCCAACTGTTAAACATAGAAATCAAAGTAATTTATTTTGCTACCATTTCCTTTAGGTGGCACTCACATATTGTTCAATTGTACTGGGGACATTAGGCTTTATTACTGTTATTGGGATCAATCAGATATGCGTTTTCTGCTGGTTTTGCTCATGGCTATGTACACAAGAAATTTTAGATTATAAAATAAATATGATGGACCAATGTTTCCAGCTACTACTTCCGGTGTACATCCTTTTTTATTATGTGTCACTTCAGATTTGGTCTTTGTTCAAACCTGCCTATAATATCAACAAGAACTAAAACTGAAAGATTTCAACAAGAATCATGTACTTGCAAAACCATTGTTCAAAATCCAAGATTTCATCCCTGAAGTGTTCGTTTAAAAGTTAAGGCAATTTTCTGTTC]
[+] EMBL AA750097             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ACTACTTCCGGTGTACATCCTTTTTTATTATGAGACACTTCAGATTTGGTCTTTGTTCAAACCTGCCTATAATATCAACAAGAACTAAAACTGAAAGATTTCAACAAGAATCATGTACTTGCAAAACCATTGTTCAAAATCCAAGATTTCATCCCTGAAGTGTTCGTTT AAAGT  CGGCA  TTTCTGTcg]




>consensus_4800#0
TAAAAAACGGAGGTAGTATTTATTTTTATTCTTAGAGGTAATAGTATGCACACAAACTGA
GCAGGTATTCTTTTCAGGCTCTTTTGAAGAGGTTAGGTGTTTTTATGTGATCTCTGCAAA
TTATTGATTCTATAATGAGGTTGCGTAAATATGAAGTATGATATTATCTAGATTCCAATT
ACATTGTGGGACATAGTAATTCTCATTGCTATTGTAGGCCATAGTGTATTGATTCCTGTG
CATCGCTTCTTTCTGGAGTTCAGTTACCACGTTGGTGCTTCATATGCAACAGCATGGACC
AATTTACTATGCCATGTCCTAAGAAGGTTTGTGCATGACAAGAAGGTATCTAAGATAACA
CTCTTTCGTTAATGCCAACTGTTAAACATAGAAATCAAAGTAATTTATTTTGCTACCATT
TCCTTTAGGTGGCACTCACATATTGTTCAATTGTACTGGGGACATTAGGCTTTATTACTG
TTATTGGGATCAATCAGATATGCGTTTTCTGCTGGTTTTGCTCATGGCTATGTACACAAG
AAATTTTAGATTATAAAATAAATATGATGGACCAATGTTTCCAGCTACTACTTCCGGTGT
ACATCCTTTTTTATTATGTGTCACTTCAGATTTGGTCTTTGTTCAAACCTGCCTATAATA
TCAACAAGAACTAAAACTGAAAGATTTCAACAAGAATCATGTACTTGCAAAACCATTGTT
CAAAATCCAAGATTTCATCCCTGAAGTGTTCGTTTAAAAGTTAAGGCAATTTTCTGTTC

consensusID : consensus_4800#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 675
fasta sequence

                              [TTCCGCCTTTGCTCTTTTAGTCGATATGAAACACATTTCTCAAACCTTCACTTTGTTTCCAAGGGTAATAGTAGCCCACAAACTGAGCAGGTATTCTCTTCAGGCTCTTTGAAGGAGGTTAGGCGTTTTTATGTGCTCTTTGCGAATTATTGGTTCTATAATGAGGTGGCGTAAATCTGAAGTATGATATCATCTAGATTCCAATTACATTGTGGGACATAGTAATTCTCATTGCTATTGTAGGCCATAGTGTATTGATTCCATGCTTATTACCCCTTATGGTTCCCTTCCTTTCCTTATTACCTGTGCATCGCTTCTTTCTGGAGTTCAGTTACCACGTTGGTGCTTCATATGCAACAGCATGGACCAATTTACTATGCCATGTCCTAAGAAGGTTTGTGCATGACAAGAAGGTATCTAAGATAACACTCTTTCGTTAATGCCAACTGTTAAACATAGAAATCAAAGTAATTTATTTTGCTACCCATTTCCTTTAGGTGGCACTCACAGATTGTTCAATTGTACTGGGGACATTAGGCTTTATTACTGTAATTGGAATCAATCAGATATGCGTTCTCTGGTTGTTTTGCTCATGGCTATGTATACAAGAAATTTTAGATTATAAAATAAATATGATGGACCAATGTTTCCAGCTCCTAAAAAAAAAAAAAAAAA]

[-] EMBL CA761390             [TTCCGCCTTTGCTCTTTTAGTCGATATGAAACACATTTCTCAAACCTTCACTTTGTTTCCAAGGGTAATAGTAGCCCACAAACTGAGCAGGTATTCTCTTCAGGCTCTTTGAAGGAGGTTAGGCGTTTTTATGTGCTCTTTGCGAATTATTGGTTCTATAATGAGGTGGCGTAAATCTGAAGTATGATATCATCTAGATTCCAATTACATTGTGGGACATAGTAATTCTCATTGCTATTGTAGGCCATAGTGTATTGATTCCATGCTTATTACCCCTTATGGTTCCCTTCCTTTCCTTATTACCTGTGCATCGCTTCTTTCTGGAGTTCAGTTACCACGTTGGTGCTTCATATGCAACAGCATGGACCAATTTACTATGCCATGTCCTAAGAAGGTTTGTGCATGACAAGAAGGTATCTAAGATAACACTCTTTCGTTAATGCCAACTGTTAAACATAGAAATCAAAGTAATTTATTTTGCTACCCATTTCCTTTAGGTGGCACTCACAGATTGTTCAATTGTACTGGGGACATTAGGCTTTATTACTGTAATTGGAATCAATCAGATATGCGTTCTCTGGTTGTTTTGCTCATGGCTATGTATACAAGAAATTTTAGATTATAAAATAAATATGATGGACCAATGTTTCCAGCTCCTAAAAAAAAAAAAAAAAA]




>consensus_4800#1
TTCCGCCTTTGCTCTTTTAGTCGATATGAAACACATTTCTCAAACCTTCACTTTGTTTCC
AAGGGTAATAGTAGCCCACAAACTGAGCAGGTATTCTCTTCAGGCTCTTTGAAGGAGGTT
AGGCGTTTTTATGTGCTCTTTGCGAATTATTGGTTCTATAATGAGGTGGCGTAAATCTGA
AGTATGATATCATCTAGATTCCAATTACATTGTGGGACATAGTAATTCTCATTGCTATTG
TAGGCCATAGTGTATTGATTCCATGCTTATTACCCCTTATGGTTCCCTTCCTTTCCTTAT
TACCTGTGCATCGCTTCTTTCTGGAGTTCAGTTACCACGTTGGTGCTTCATATGCAACAG
CATGGACCAATTTACTATGCCATGTCCTAAGAAGGTTTGTGCATGACAAGAAGGTATCTA
AGATAACACTCTTTCGTTAATGCCAACTGTTAAACATAGAAATCAAAGTAATTTATTTTG
CTACCCATTTCCTTTAGGTGGCACTCACAGATTGTTCAATTGTACTGGGGACATTAGGCT
TTATTACTGTAATTGGAATCAATCAGATATGCGTTCTCTGGTTGTTTTGCTCATGGCTAT
GTATACAAGAAATTTTAGATTATAAAATAAATATGATGGACCAATGTTTCCAGCTCCTAA
AAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4800#0      ------------------------TAAAAAACGGAGGTAGTA---TTTATTTTTATTCTT 33
consensus_4800#1      TTCCGCCTTTGCTCTTTTAGTCGATATGAAACACATTTCTCAAACCTTCACTTTGTTTCC 60
                                              **  ****  *  *   *    **   *** **   

consensus_4800#0      AGAGGTAATAGTATGCACACAAACTGAGCAGGTATTCTTTTCAGGCTCTTTTGAAGAGGT 93
consensus_4800#1      AAGGGTAATAGTA-GCCCACAAACTGAGCAGGTATTCTCTTCAGGCTCTTTGAAGGAGGT 119
                      *  ********** ** ********************* ************  * *****

consensus_4800#0      TAGGTGTTTTTATGTGATCTCTGCAAATTATTGATTCTATAATGAGGTTGCGTAAATATG 153
consensus_4800#1      TAGGCGTTTTTATGTGCTCTTTGCGAATTATTGGTTCTATAATGAGGTGGCGTAAATCTG 179
                      **** *********** *** *** ******** ************** ******** **

consensus_4800#0      AAGTATGATATTATCTAGATTCCAATTACATTGTGGGACATAGTAATTCTCATTGCTATT 213
consensus_4800#1      AAGTATGATATCATCTAGATTCCAATTACATTGTGGGACATAGTAATTCTCATTGCTATT 239
                      *********** ************************************************

consensus_4800#0      GTAGGCCATAGTGTATTGATTCC------------------------------------- 236
consensus_4800#1      GTAGGCCATAGTGTATTGATTCCATGCTTATTACCCCTTATGGTTCCCTTCCTTTCCTTA 299
                      ***********************                                     

consensus_4800#0      -----TGTGCATCGCTTCTTTCTGGAGTTCAGTTACCACGTTGGTGCTTCATATGCAACA 291
consensus_4800#1      TTACCTGTGCATCGCTTCTTTCTGGAGTTCAGTTACCACGTTGGTGCTTCATATGCAACA 359
                           *******************************************************

consensus_4800#0      GCATGGACCAATTTACTATGCCATGTCCTAAGAAGGTTTGTGCATGACAAGAAGGTATCT 351
consensus_4800#1      GCATGGACCAATTTACTATGCCATGTCCTAAGAAGGTTTGTGCATGACAAGAAGGTATCT 419
                      ************************************************************

consensus_4800#0      AAGATAACACTCTTTCGTTAATGCCAACTGTTAAACATAGAAATCAAAGTAATTTATTTT 411
consensus_4800#1      AAGATAACACTCTTTCGTTAATGCCAACTGTTAAACATAGAAATCAAAGTAATTTATTTT 479
                      ************************************************************

consensus_4800#0      GCTACC-ATTTCCTTTAGGTGGCACTCACATATTGTTCAATTGTACTGGGGACATTAGGC 470
consensus_4800#1      GCTACCCATTTCCTTTAGGTGGCACTCACAGATTGTTCAATTGTACTGGGGACATTAGGC 539
                      ****** *********************** *****************************

consensus_4800#0      TTTATTACTGTTATTGGGATCAATCAGATATGCGTTTTCTGCTGGTTTTGCTCATGGCTA 530
consensus_4800#1      TTTATTACTGTAATTGGAATCAATCAGATATGCGTTCTCTGGTTGTTTTGCTCATGGCTA 599
                      *********** ***** ****************** **** * ****************

consensus_4800#0      TGTACACAAGAAATTTTAGATTATAAAATAAATATGATGGACCAATGTTTCCAGCTACTA 590
consensus_4800#1      TGTATACAAGAAATTTTAGATTATAAAATAAATATGATGGACCAATGTTTCCAGCTCCTA 659
                      **** *************************************************** ***

consensus_4800#0      CTTCCGGTGTACATCCTTTTTTATTATGTGTCACTTCAGATTTGGTCTTTGTTCAAACCT 650
consensus_4800#1      AAAAAAAAAAAAAAAA-------------------------------------------- 675
                                * *                                               

consensus_4800#0      GCCTATAATATCAACAAGAACTAAAACTGAAAGATTTCAACAAGAATCATGTACTTGCAA 710
consensus_4800#1      ------------------------------------------------------------
                                                                                  

consensus_4800#0      AACCATTGTTCAAAATCCAAGATTTCATCCCTGAAGTGTTCGTTTAAAAGTTAAGGCAAT 770
consensus_4800#1      ------------------------------------------------------------
                                                                                  

consensus_4800#0      TTTCTGTTC 779
consensus_4800#1      ---------