These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4975#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 962 fasta sequence [TCTGTAGGGCGGCTGGCGGGTGGGGAGGAGGTCCGGCGGCGGCGGCGGCGGCGCGTGCGACCTCGGGGTTGGACCGTCGGAGAGGCCCGGGAGGCGGCGGCGGCGGCGACGACGACACGGGAGAAGGGAGGTGGCGGCGGCTGCAACGCTTGAGAAGGGAGAAGCGGCCGGAGGCGCCGGCGCGGGAAGAAGCTGTCTTCGGCGTCGTGCCCGCTCCGCCCACCACCGCCTGCTCCACCCGCCGCTACCCCGCGCTCACACACACCCGCCAGCGACGCCGCTGACGGCGCGGACGAAAGATCTGCGGCCATGGACGACGACGGCGGCGACGTCCTCGCTCTCCCCGTCCCGATCCCCGTCGGCGCCATCTTCCTCTCCTGCGGCGCGCCTGCCCGCCGCTCGTCTGCTCCGCCGACCGGCCGCTCCCCGCGCAGTCGGCGGCGGCGAAGGTGACCGTGCCGGCGTCGAGGTCGTGGCCGACGTGGATGTTCTGCTGCGCGAGGTTCCCGAGGATGGACACCGGCTGCTGCTCCGTTATCGCCACGATCGCCAGGCACAGCGTCCCTTCCTGCACCATCACGAACGCGTTCTCCGGCATCAGCGCCAACGTCAAGTCCGGCGTCAAGTCCGAACTCCAGCGTCAAGTCCGGACTCGCCTGTTCGGTTCACTTCCTGCTGGCTGTACACAAGAGGTCATTCAAGATCAGTAACTCATACTCTATTCTAGCAAGCTGGCTGTTGGTGAGAATTCTGAATTCTCATTGCATCGCCTAACGAAGATCGGAGTGCTATACATCAATCAATTTCTCAGCTGGGAGTGTTACTCCTGCATTGCTCTACAATTTATGGGTCATGTAATTTGATCTCTCACAGAATGTATAGCGAGGTAAGACAGCGAAACCGGCGCCACAAAATATCTTGAAATCCTGTTCTTCTGATAAAAGAACAGCTTAGCTTGAGAT] [+] EMBL AK066983 [TCTGTAGGGCGGCTGGCGGGTGGGGAGGAGGTCCGGCGGCGGCGGCGGCGGCGCGTGCGACCTCGGGGTTGGACCGTCGGAGAGGCCCGGGAGGCGGCGGCGGCGGCGACGACGACACGGGAGAAGGGAGGTGGCGGCGGCTGCAACGCTTGAGAAGGGAGAAGCGGCCGGAGGCGCCGGCGCGGGAAGAAGCTGTCTTCGGCGTCGTGCCCGCTCCGCCCACCACCGCCTGCTCCACCCGCCGCTACCCCGCGCTCACACACACCCGCCAGCGACGCCGCTGACGGCGCGGACGAAAGATCTGCGGCCATGGACGACGACGGCGGCGACGTCCTCGCTCTCCCCGTCCCGATCCCCGTCGGCGCCATCTTCCTCTCCTGCGGCGCGCCTGCCCGCCGCTCGTCTGCTCCGCCGACCGGCCGCTCCCCGCGCAGTCGGCGGCGGCGAAGGTGACCGTGCCGGCGTCGAGGTCGTGGCCGACGTGGATGTTCTGCTGCGCGAGGTTCCCGAGGATGGACACCGGCTGCTGCTCCGTTATCGCCACGATCGCCAGGCACAGCGTCCCTTCCTGCACCATCACGAACGCGTTCTCCGGCATCAGCGCCAACGTCAAGTCCGGCGTCAAGTCCGAACTCCAGCGTCAAGTCCGGACTCGCCTGTTCGGTTCACTTCCTGCTGGCTGTACACAAGAGGTCATTCAAGATCAGTAACTCATACTCTATTCTAGCAAGCTGGCTGTTGGTGAGAATTCTGAATTCTCATTGCATCGCCTAACGAAGATCGGAGTGCTATACATCAATCAATTTCTCAGCTGGGAGTGTTACTCCTGCATTGCTCTACAATTTATGGGTCATGTAATTTGATCTCTCACAGAATGTATAGCGAGGTAAGACAGCGAAACCGGCGCCACAAAATATCTTGAAATCCTGTTCTTCTGATAAAAGAACAGCTTAGCTTGAGAT] consensusID : consensus_4975#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 598 fasta sequence [GTCGCCACGATTGCCAGGCACAGCGTCCCCTCCTACACCGTCACGGACGCGTTCTCCGGCTTCAGCGCCACCGCCGCGCGGCCGCCGCCACCGCCGAACTCCAGCGTCAAGTCCGGACTCGCTTGTTCGGTTTGCTTCCTGCTGGATGTACACATGAGGTCATTCAAGATCAGTAACTCATACTCTATTCTAGCAAGCTGGCTGTTGGTGAGAATTCTGAATTCTCATTGCATCGCCTAACGAAGATAGAAGATCGGAGTGTTATACATCAATCAATTTCTTAGCTGGGAATGTTACTCCTGCATTGCTCTACAATTTATGGGTCATGTAATTTGATCTCTCACAGAATCTATGGCGAGGAGTAACAAAGCTTATTTTTGCATTGCCCCGAGTCCACAATGATGCGGGAGCTCGCCGCCGAAGCCACCGTCCTTGTTGCCGACCCTGACGAAATCGAGGAACACGGTGTATTACGTGTCCCCGTCCCCCCGCGACAAACGGCGTGCTCCTTGCGCCCAATTCGGTGACGTTGGCGAGGGTGCCCGAAGTTAAACCCCAAAATGATTTGACCGAGGGGGGGACAAGGCTGTATGAAAAA] [+] EMBL CA755703 [GTCGCCACGATTGCCAGGCACAGCGTCCCCTCCTACACCGTCACGGACGCGTTCTCCGGCTTCAGCGCCACCGCCGCGCGGCCGCCGCCACCGCCGAACTCCAGCGTCAAGTCCGGACTCGCTTGTTCGGTTTGCTTCCTGCTGGATGTACACATGAGGTCATTCAAGATCAGTAACTCATACTCTATTCTAGCAAGCTGGCTGTTGGTGAGAATTCTGAATTCTCATTGCATCGCCTAACGAAGATAGAAGATCGGAGTGTTATACATCAATCAATTTCTTAGCTGGGAATGTTACTCCTGCATTGCTCTACAATTTATGGGTCATGTAATTTGATCTCTCACAGAATCTATGGCGAGGAGTAACAAAGCTTATTTTTGCATTGCCCCGAGTCCACAATGATGCGGGAGCTCGCCGCCGAAGCCACCGTCCTTGTTGCCGACCCTGACGAAATCGAGGAACACGGTGTATTACGTGTCCCCGTCCCCCCGCGACAAACGGCGTGCTCCTTGCGCCCAATTCGGTGACGTTGGCGAGGGTGCCCGAAGTTAAACCCCAAAATGATTTGACCGAGGGGGGGACAAGGCTGTATGAAAAA] [+] EMBL BU672769 [ CTCCAGCGTCAAGT CGGACTCGCTTG CCGGTTGTATTTCTGCTGGATGTACACATGAGGTCATTCAAGATCAGTAACTCATACTCTATTCTAGCAAGCTGG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4975#0 TCTGTAGGGCGGCTGGCGGGTGGGGAGGAGGTCCGGCGGCGGCGGCGGCGGCGCGTGCGA 60 consensus_4975#1 ------------------------------------------------------------ consensus_4975#0 CCTCGGGGTTGGACCGTCGGAGAGGCCCGGGAGGCGGCGGCGGCGGCGACGACGACACGG 120 consensus_4975#1 ------------------------------------------------------------ consensus_4975#0 GAGAAGGGAGGTGGCGGCGGCTGCAACGCTTGAGAAGGGAGAAGCGGCCGGAGGCGCCGG 180 consensus_4975#1 ------------------------------------------------------------ consensus_4975#0 CGCGGGAAGAAGCTGTCTTCGGCGTCGTGCCCGCTCCGCCCACCACCGCCTGCTCCACCC 240 consensus_4975#1 ------------------------------------------------------------ consensus_4975#0 GCCGCTACCCCGCGCTCACACACACCCGCCAGCGACGCCGCTGACGGCGCGGACGAAAGA 300 consensus_4975#1 ------------------------------------------------------------ consensus_4975#0 TCTGCGGCCATGGACGACGACGGCGGCGACGTCCTCGCTCTCCCCGTCCCGATCCCCGTC 360 consensus_4975#1 ------------------------------------------------------------ consensus_4975#0 GGCGCCATCTTCCTCTCCTGCGGCGCGCCTGCCCGCCGCTCGTCTGCTCCGCCGACCGGC 420 consensus_4975#1 ------------------------------------------------------------ consensus_4975#0 CGCTCCCCGCGCAGTCGGCGGCGGCGAAGGTGACCGTGCCGGCGTCGAGGTCGTGGCCGA 480 consensus_4975#1 ------------------------------------------------------------ consensus_4975#0 CGTGGATGTTCTGCTGCGCGAGGTTCCCGAGGATGGACACCGGCTGCTGCTCCGTTATCG 540 consensus_4975#1 --------------------------------------------------------GTCG 4 *** consensus_4975#0 CCACGATCGCCAGGCACAGCGTCCCTTCCTGCACCATCACGAACGCGTTCTCCGGCATCA 600 consensus_4975#1 CCACGATTGCCAGGCACAGCGTCCCCTCCTACACCGTCACGGACGCGTTCTCCGGCTTCA 64 ******* ***************** **** **** ***** ************** *** consensus_4975#0 GCGCCAACGTCAAGT--CCGGCGTCAAGTCCGAACTCCAGCGTCAAGTCCGGACTCGCCT 658 consensus_4975#1 GCGCCACCGCCGCGCGGCCGCCGCCACCGCCGAACTCCAGCGTCAAGTCCGGACTCGCTT 124 ****** ** * * *** ** ** ***************************** * consensus_4975#0 GTTCGGTTCACTTCCTGCTGGCTGTACACAAGAGGTCATTCAAGATCAGTAACTCATACT 718 consensus_4975#1 GTTCGGTTTGCTTCCTGCTGGATGTACACATGAGGTCATTCAAGATCAGTAACTCATACT 184 ******** *********** ******** ***************************** consensus_4975#0 CTATTCTAGCAAGCTGGCTGTTGGTGAGAATTCTGAATTCTCATTGCATCGCCTAACGAA 778 consensus_4975#1 CTATTCTAGCAAGCTGGCTGTTGGTGAGAATTCTGAATTCTCATTGCATCGCCTAACGAA 244 ************************************************************ consensus_4975#0 GAT-------CGGAGTGCTATACATCAATCAATTTCTCAGCTGGGAGTGTTACTCCTGCA 831 consensus_4975#1 GATAGAAGATCGGAGTGTTATACATCAATCAATTTCTTAGCTGGGAATGTTACTCCTGCA 304 *** ******* ******************* ******** ************* consensus_4975#0 TTGCTCTACAATTTATGGGTCATGTAATTTGATCTCTCACAGAATGTATAGCGAGG--TA 889 consensus_4975#1 TTGCTCTACAATTTATGGGTCATGTAATTTGATCTCTCACAGAATCTATGGCGAGGAGTA 364 ********************************************* *** ****** ** consensus_4975#0 AGACAGCGAAAC----CGGCGCCACAAAAT-ATCTTGAAATCCTGTTCTTCTGATAAAAG 944 consensus_4975#1 ACAAAGCTTATTTTTGCATTGCCCCGAGTCCACAATGATGCGGGAGCTCGCCGCCGAAGC 424 * * *** * * *** * * * *** * * ** consensus_4975#0 AACAG-CTTAGCTTGAGAT----------------------------------------- 962 consensus_4975#1 CACCGTCCTTGTTGCCGACCCTGACGAAATCGAGGAACACGGTGTATTACGTGTCCCCGT 484 ** * * * * * ** consensus_4975#0 ------------------------------------------------------------ consensus_4975#1 CCCCCCGCGACAAACGGCGTGCTCCTTGCGCCCAATTCGGTGACGTTGGCGAGGGTGCCC 544 consensus_4975#0 ------------------------------------------------------ consensus_4975#1 GAAGTTAAACCCCAAAATGATTTGACCGAGGGGGGGACAAGGCTGTATGAAAAA 598 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||