These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5011#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1492 fasta sequence [CTCAATTAAACTCCACTAAACCTCCCTATGGCCTATGCCATCCACCAAACAAGCAACTGAATCGGAATCGCGTATTGCTTTCGAGCTCCAATTCAACAGATTAGCAGAACACAGGGCGCTGAGCTGATGGCGAATTGTGGCCGGAGGTTTGCCGCCGCCGGCGCTCCGGCGACGGCGAGACGGTGTAATCTGGAGCTGTTCCTCGAGGCCACCACGCCGGTTGTCCCGACGACAGCCTGCTCCTCCAAGAAGAGCATGAATGGTTGGAAGCAATCTGATGAAGAAAATGCGCTGCCATTCTTCAGTTTGGGCGACCTCTGGGATGGGTTCAGAGAGAGCAGCGCATATGGTATCGCTGTGCCAATTGTTCTGAATGGTTGCAGTGACGGTGTGGTGCAGTATTACGTCCCTTACTTATCTGCAATCCAGCTTTATGGAAGATTAAGGAGGCATTTCTACCATTCCAGGCCAAGTGGAGAAGACAGCGACGGCGACTACTGTCAAGACACAGGCAGTGAAGAGATGAGCGACCTTGAGCACGACTCATGTCCAAGCAGCACGGATGCGTTCTCAGTCCAAGATACCACCTGCGAAACCTCCACCAGCGAAGCATCGAGCGACGAAAGCGAATCAACGAGAATTTCCCACGAGCAGCTCATCTTCGAGTTTCTGGAATCCGAGCCTCCCTACCAGCGTGAACCGCTAGCTGACAAGATTTGTAGTCTTGCCAGGGGATTTCCGGAGCTGAATACTCTCAGGAGCTGTGATTTGTCGCCAACCAGTTGGATGTCCGTCGCATGGTATCCAATATACCGAATTCCGACGGGACCAACACTATGCGATCTGGACGCCTGCTTCCTCACATATCATCCCCTCTCCACGCAGCTCACAGGCGGCATCTGCCCGGAGCCAAAAGGCAACAACAGCGGCGTCCCCGTGACGACGGCGATGTGCCTCCCGACGTTCGCCATGGCGTCGTACAGACTCAAGGTCGCGGCGTGGGCACCGGGCGGGCGAGACAGGCAGCTGGTCGCCTCCCTCTCGCACGCCGCCG-ACGCCTGGCTCGGCCTCCTCGGAGTTCACCACCCGGATCACCGCTTCTTCGCCGCTCGCCGCGTCGTGTCCAGAAGATGATGAGTCGATGGAGATCGCCTGCCAACCTGAGAGTGCAGAGAAGTTCTCTGTGTTCTTTTTTTTTTTTTTTTGTGTGTCTCATTCAGTTCGTATATTGTCAGGGTTCAGACTGTACTCGGATAGTTGGATCACAAAGCGTGCATCCTGTTTTTGTTTTCCAGTAATGGTTTCAGAGAAAGATTAACCAAGAATGTATATAGAATTAGAAGACAATTAAAAATGTGTTTTCTTTTATGCCAGCTGGTCTAGTGTTTATGTTTAAACGTGATATTTTGTTGTACCAAAACTCAGATACGAGTAACACTCAAGCAGCTGGTGTACTTCTGTTGTACTGCTTCTAAAAAAAAAAAAAAAAAAA] [+] EMBL AK073435 [CTCAATTAAACTCCACTAAACCTCCCTATGGCCTATGCCATCCACCAAACAAGCAACTGAATCGGAATCGCGTATTGCTTTCGAGCTCCAATTCAACAGATTAGCAGAACACAGGGCGCTGAGCTGATGGCGAATTGTGGCCGGAGGTTTGCCGCCGCCGGCGCTCCGGCGACGGCGAGACGGTGTAATCTGGAGCTGTTCCTCGAGGCCACCACGCCGGTTGTCCCGACGACAGCCTGCTCCTCCAAGAAGAGCATGAATGGTTGGAAGCAATCTGATGAAGAAAATGCGCTGCCATTCTTCAGTTTGGGCGACCTCTGGGATGGGTTCAGAGAGAGCAGCGCATATGGTATCGCTGTGCCAATTGTTCTGAATGGTTGCAGTGACGGTGTGGTGCAGTATTACGTCCCTTACTTATCTGCAATCCAGCTTTATGGAAGATTAAGGAGGCATTTCTACCATTCCAGGCCAAGTGGAGAAGACAGCGACGGCGACTACTGTCAAGACACAGGCAGTGAAGAGATGAGCGACCTTGAGCACGACTCATGTCCAAGCAGCACGGATGCGTTCTCAGTCCAAGATACCACCTGCGAAACCTCCACCAGCGAAGCATCGAGCGACGAAAGCGAATCAACGAGAATTTCCCACGAGCAGCTCATCTTCGAGTTTCTGGAATCCGAGCCTCCCTACCAGCGTGAACCGCTAGCTGACAAGATTTGTAGTCTTGCCAGGGGATTTCCGGAGCTGAATACTCTCAGGAGCTGTGATTTGTCGCCAACCAGTTGGATGTCCGTCGCATGGTATCCAATATACCGAATTCCGACGGGACCAACACTATGCGATCTGGACGCCTGCTTCCTCACATATCATCCCCTCTCCACGCAGCTCACAGGCGGCATCTGCCCGGAGCCAAAAGGCAACAACAGCGGCGTCCCCGTGACGACGGCGATGTGCCTCCCGACGTTCGCCATGGCGTCGTACAGACTCAAGGTCGCGGCGTGGGCACCGGGCGGGCGAGACAGGCAGCTGGTCGCCTCCCTCTCGCACGCCGCCG ACGCCTGGCTCGGCCTCCTCGGAGTTCACCACCCGGATCACCGCTTCTTCGCCGCTCGCCGCGTCGTGTCCAGAAGATGATGAGTCGATGGAGATCGCCTGCCAACCTGAGAGTGCAGAGAAGTTCTCTGTGTTCTTTTTTTTTTTTTTTTGTGTGTCTCATTCAGTTCGTATATTGTCAGGGTTCAGACTGTACTCGGATAGTTGGATCACAAAGCGTGCATCCTGTTTTTGTTTTCCAGTAATGGTTTCAGAGAAAGATTAACCAAGAATGTATATAGAATTAGAAGACAATTAAAAATGTGTTTTCTTTTATGCCAGCTGGTCTAGTGTTTATGTTTAAACGTGATATTTTGTTGT ] [-] EMBL CF304104 [ AAAAGGCAACAACAGCGGCGTCCCCGTGACGACGGCGATGTGCCTCCCGACGTTCGCCATGGCGTCGTACAGACTCAAGGTCGCGGCGTGGGCACCGGGCGGGCGAGACAGGCAGNTGGTCGCCTCCCTTTCGCACGCCGCCGAACGCCTGGCTCGGCCTCCTCGGAGTTCACCACCCGGATCACCGCTTTTTCGCCGCTCGCCGCGTCGTGTCCAGAAGATGATGAGTCGATGGAGATCGCCTGCCAACCTGAGAGTGCAGAGAAGTTCTCTGTGTTCTTTTTTTTTTTTTTTTGTGTGTCTCATTCAGTTCGTATATTGTCAGGGTTCAGACTGTACTCGGATAGTTGGATCACAAAGCGTGCATCCTGTTTTTGTTTTCCAGTAATGGTTTCAGAGAAAGATTAACCAAGAATGTATATAGAATTAGAAGACAATTAAAAATGTGTTTTCTTTTATGCCAGCTGGTCTAGTGTTTATGTTTAAACGTGATATTTTGTTGTACCAAAACTCAGATACGAGTAACACTCAAGCAGCTGGTGTACTTCTGTTGTACTGCTTCTAAAAAAAAAAAAAAAAAAA] consensusID : consensus_5011#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 176 fasta sequence [CCAGCGTGAACCGCTAGCTGACAAGATTTGTAGTCTTGACATGGTATTCCCGGAGCTGACTACTCTCAGGAGCTATGATTTATCGCCAACCAGGTTGGATGTCCGTCGCATGGTATCCAAGATACCGAATTCCTACGGGACCAGCACCTATGCGATCTCGACTGCAGATTCCTAAA] [+] EMBL AA750601 [CCAGCGTGAACCGCTAGCTGACAAGATTTGTAGTCTTGACATGGTATTCCCGGAGCTGACTACTCTCAGGAGCTATGATTTATCGCCAACCAGGTTGGATGTCCGTCGCATGGTATCCAAGATACCGAATTCCTACGGGACCAGCACCTATGCGATCTCGACTGCAGATTCCTAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5011#0 CTCAATTAAACTCCACTAAACCTCCCTATGGCCTATGCCATCCACCAAACAAGCAACTGA 60 consensus_5011#1 ------------------------------------------------------------ consensus_5011#0 ATCGGAATCGCGTATTGCTTTCGAGCTCCAATTCAACAGATTAGCAGAACACAGGGCGCT 120 consensus_5011#1 ------------------------------------------------------------ consensus_5011#0 GAGCTGATGGCGAATTGTGGCCGGAGGTTTGCCGCCGCCGGCGCTCCGGCGACGGCGAGA 180 consensus_5011#1 ------------------------------------------------------------ consensus_5011#0 CGGTGTAATCTGGAGCTGTTCCTCGAGGCCACCACGCCGGTTGTCCCGACGACAGCCTGC 240 consensus_5011#1 ------------------------------------------------------------ consensus_5011#0 TCCTCCAAGAAGAGCATGAATGGTTGGAAGCAATCTGATGAAGAAAATGCGCTGCCATTC 300 consensus_5011#1 ------------------------------------------------------------ consensus_5011#0 TTCAGTTTGGGCGACCTCTGGGATGGGTTCAGAGAGAGCAGCGCATATGGTATCGCTGTG 360 consensus_5011#1 ------------------------------------------------------------ consensus_5011#0 CCAATTGTTCTGAATGGTTGCAGTGACGGTGTGGTGCAGTATTACGTCCCTTACTTATCT 420 consensus_5011#1 ------------------------------------------------------------ consensus_5011#0 GCAATCCAGCTTTATGGAAGATTAAGGAGGCATTTCTACCATTCCAGGCCAAGTGGAGAA 480 consensus_5011#1 ------------------------------------------------------------ consensus_5011#0 GACAGCGACGGCGACTACTGTCAAGACACAGGCAGTGAAGAGATGAGCGACCTTGAGCAC 540 consensus_5011#1 ------------------------------------------------------------ consensus_5011#0 GACTCATGTCCAAGCAGCACGGATGCGTTCTCAGTCCAAGATACCACCTGCGAAACCTCC 600 consensus_5011#1 ------------------------------------------------------------ consensus_5011#0 ACCAGCGAAGCATCGAGCGACGAAAGCGAATCAACGAGAATTTCCCACGAGCAGCTCATC 660 consensus_5011#1 ------------------------------------------------------------ consensus_5011#0 TTCGAGTTTCTGGAATCCGAGCCTCCCTACCAGCGTGAACCGCTAGCTGACAAGATTTGT 720 consensus_5011#1 -----------------------------CCAGCGTGAACCGCTAGCTGACAAGATTTGT 31 ******************************* consensus_5011#0 AGTCTTGCCAGGGGATTTCCGGAGCTGAATACTCTCAGGAGCTGTGATTTGTCGCCAACC 780 consensus_5011#1 AGTCTTGACATGGTATTCCCGGAGCTGACTACTCTCAGGAGCTATGATTTATCGCCAACC 91 ******* ** ** *** ********** ************** ****** ********* consensus_5011#0 AG-TTGGATGTCCGTCGCATGGTATCCAATATACCGAATTCCGACGGGACCAACAC-TAT 838 consensus_5011#1 AGGTTGGATGTCCGTCGCATGGTATCCAAGATACCGAATTCCTACGGGACCAGCACCTAT 151 ** ************************** ************ ********* *** *** consensus_5011#0 GCGATCTGGACGCCTGCTTCCTCACATATCATCCCCTCTCCACGCAGCTCACAGGCGGCA 898 consensus_5011#1 GCGATCTCGACTGCAGATTCCTAAA----------------------------------- 176 ******* *** * * ***** * consensus_5011#0 TCTGCCCGGAGCCAAAAGGCAACAACAGCGGCGTCCCCGTGACGACGGCGATGTGCCTCC 958 consensus_5011#1 ------------------------------------------------------------ consensus_5011#0 CGACGTTCGCCATGGCGTCGTACAGACTCAAGGTCGCGGCGTGGGCACCGGGCGGGCGAG 1018 consensus_5011#1 ------------------------------------------------------------ consensus_5011#0 ACAGGCAGCTGGTCGCCTCCCTCTCGCACGCCGCCGACGCCTGGCTCGGCCTCCTCGGAG 1078 consensus_5011#1 ------------------------------------------------------------ consensus_5011#0 TTCACCACCCGGATCACCGCTTCTTCGCCGCTCGCCGCGTCGTGTCCAGAAGATGATGAG 1138 consensus_5011#1 ------------------------------------------------------------ consensus_5011#0 TCGATGGAGATCGCCTGCCAACCTGAGAGTGCAGAGAAGTTCTCTGTGTTCTTTTTTTTT 1198 consensus_5011#1 ------------------------------------------------------------ consensus_5011#0 TTTTTTTGTGTGTCTCATTCAGTTCGTATATTGTCAGGGTTCAGACTGTACTCGGATAGT 1258 consensus_5011#1 ------------------------------------------------------------ consensus_5011#0 TGGATCACAAAGCGTGCATCCTGTTTTTGTTTTCCAGTAATGGTTTCAGAGAAAGATTAA 1318 consensus_5011#1 ------------------------------------------------------------ consensus_5011#0 CCAAGAATGTATATAGAATTAGAAGACAATTAAAAATGTGTTTTCTTTTATGCCAGCTGG 1378 consensus_5011#1 ------------------------------------------------------------ consensus_5011#0 TCTAGTGTTTATGTTTAAACGTGATATTTTGTTGTACCAAAACTCAGATACGAGTAACAC 1438 consensus_5011#1 ------------------------------------------------------------ consensus_5011#0 TCAAGCAGCTGGTGTACTTCTGTTGTACTGCTTCTAAAAAAAAAAAAAAAAAAA 1492 consensus_5011#1 ------------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||