These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5036#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 519 fasta sequence [CCTTATCCATTCGCCTTCTCCCTCTTGCGCTCTCTCTCCCTCTCTCCTCATCCTTTCTCATCTCTTGTCTTCTCGCCTAGTCTGTGAGCATTGGAGGCGTGGGGCACGGAGACCCTGGAGGCGAGGTTGGCGCTGCGGAAGGTCGTCATCACCAAGCTGCCCGTAGCCTTGTCGTCGGCGGGGCGGCAACATCGCACGGGCGGAGGCCGGCAGCAGGATGCGCTCCTTGCTCGATCCCTCCCTTGCTGCCTGCTGCTGGATGGGGGAGCTCGCAGCACATCGGAGGAGAGAGAAATTTAGTTGGATTGTCTTGTGCTTTTATGTGGCCCTATTGAAGAGGAGGAAGAAATCAAATTTCGACTGGTACAATTTTGAGTTTTTGATGTTTCAGCCAATGTATATGGATTTTTTTGGGTTTGGATTGAAATGTTGTACTTGATACTTCGATGGTGTTTCATATTTTTATTTACTAGTGAGTGTGCACGTGCAAGGCACGTTAACATATATTGAATGGAGTAA] [+] EMBL CF335952 [CCTTATCCATTCGCCTTCTCCCTCTTGCGCTCTCTCTCCCTCTCTCCTCATCCTTTCTCATCTCTTGTCTTCTCGCCTAGTCTGTGAGCATTGGAGGCGTGGGGCACGGAGACCCTGGAGGCGAGGTTGGCGCTGCGGAAGGTCGTCATCACCAAGCTGCCCGTAGCCTTGTCGTCGGCGGGGCGGCAACATCGCACGGGCGGAGGCCGGCAGCAGGATGCGCTCCTTGCTCGATCCCTCCCTTGCTGCCTGCTGCTGGATGGGGGAGCTCGCAGCACATCGGAGGAGAGAGAAATTTAGTTGGATTGTCTTGTGCTTTTATGTGGCCCTATTGAAGAGGAGGAAGAAATCAAATTTCGACTGGTACAATTTTGAGTTTTTGATGTTTCAGCCAATGTATATGGATTTTTTTGGGTTTGGATTGAAATGTTGTACTTGATACTTCGATGGTGTTTCATATTTTTATTTACTAGTGAGTGTGCACGTGCAAGGCACGTTAACATATATTGAATGGAGTAA] [+] EMBL CF334264 [ ATCCATTCGCCTTCTCCCTCTTGCGCTCTCTCTCCCTCTCTCCTCATCCATTCTCATCTCTTGTCTTCTCGCCTAGTCTGTGAGCATTGGAGGCGTGGGGCACGGAGACCCTGGAGGCGAGGTTGGCGCTGCGGAAGGTCGTCATCACCAAGCTGCCCGTAGCCTTGTCGTCGGCGGGGCGGCAACATCGCACGGGCGGAGGCCGGCAGCAGGATGCGCTCCTTGCTCGATCCCTCCCTTGCTGCCTGCTGCTGGATGGGGGAGCTCGCAGCACATCGGAGGAGAGAGAAATTTAGTTGGATTGTCTTGTGCTTTTATGTGGCCCTATTGAAGAGGAGGAAGAAATCAAATTTCGACTGGTACAATTTTGAGTTTTTGATGTTTCAGCCAATGT TATGGATTTTTTTGGGTTTGGATTGAAATGTTG ] consensusID : consensus_5036#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 385 fasta sequence [CTTCTCGCCTAGTCTGTGAGCATTGGAGGCGTGGGGCACGGAGACCCTGGAGGCGAGGTTGGCGCTGCGGAAGGTCGTCATCACCAAGCTGCCCGTAGCCTTGTCGTCGGCGGGGCGGCAACATCGCACGGGCGGAGGCCGGCAGCAGGATGCGCTCCTTGCTCGATCCCTCCCTTGCTGCCTGCTGCTGGATGGGGGAGCTCGCAGCACATCGGAGGAGAGAGAAATTTAGTTGGATTGTCTTGTGCTTTTATGTGGCCCTATTGAAGAGGAGGAAGAAATCAAATTTCGACTGGTACAATTTTGAGTTTTTGATGTTTCAGCCCAATGTATATGGATTTTTTTGGGTTTGGATTGAAATGTTGTACTTGATAAAAAAAAAAAA] [-] EMBL CF334263 [CTTCTCGCCTAGTCTGTGAGCATTGGAGGCGTGGGGCACGGAGACCCTGGAGGCGAGGTTGGCGCTGCGGAAGGTCGTCATCACCAAGCTGCCCGTAGCCTTGTCGTCGGCGGGGCGGCAACATCGCACGGGCGGAGGCCGGCAGCAGGATGCGCTCCTTGCTCGATCCCTCCCTTGCTGCCTGCTGCTGGATGGGGGAGCTCGCAGCACATCGGAGGAGAGAGAAATTTAGTTGGATTGTCTTGTGCTTTTATGTGGCCCTATTGAAGAGGAGGAAGAAATCAAATTTCGACTGGTACAATTTTGAGTTTTTGATGTTTCAGCCCAATGTATATGGATTTTTTTGGGTTTGGATTGAAATGTTGTACTTGATAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5036#0 CCTTATCCATTCGCCTTCTCCCTCTTGCGCTCTCTCTCCCTCTCTCCTCATCCTTTCTCA 60 consensus_5036#1 ------------------------------------------------------------ consensus_5036#0 TCTCTTGTCTTCTCGCCTAGTCTGTGAGCATTGGAGGCGTGGGGCACGGAGACCCTGGAG 120 consensus_5036#1 --------CTTCTCGCCTAGTCTGTGAGCATTGGAGGCGTGGGGCACGGAGACCCTGGAG 52 **************************************************** consensus_5036#0 GCGAGGTTGGCGCTGCGGAAGGTCGTCATCACCAAGCTGCCCGTAGCCTTGTCGTCGGCG 180 consensus_5036#1 GCGAGGTTGGCGCTGCGGAAGGTCGTCATCACCAAGCTGCCCGTAGCCTTGTCGTCGGCG 112 ************************************************************ consensus_5036#0 GGGCGGCAACATCGCACGGGCGGAGGCCGGCAGCAGGATGCGCTCCTTGCTCGATCCCTC 240 consensus_5036#1 GGGCGGCAACATCGCACGGGCGGAGGCCGGCAGCAGGATGCGCTCCTTGCTCGATCCCTC 172 ************************************************************ consensus_5036#0 CCTTGCTGCCTGCTGCTGGATGGGGGAGCTCGCAGCACATCGGAGGAGAGAGAAATTTAG 300 consensus_5036#1 CCTTGCTGCCTGCTGCTGGATGGGGGAGCTCGCAGCACATCGGAGGAGAGAGAAATTTAG 232 ************************************************************ consensus_5036#0 TTGGATTGTCTTGTGCTTTTATGTGGCCCTATTGAAGAGGAGGAAGAAATCAAATTTCGA 360 consensus_5036#1 TTGGATTGTCTTGTGCTTTTATGTGGCCCTATTGAAGAGGAGGAAGAAATCAAATTTCGA 292 ************************************************************ consensus_5036#0 CTGGTACAATTTTGAGTTTTTGATGTTTCAGCC-AATGTATATGGATTTTTTTGGGTTTG 419 consensus_5036#1 CTGGTACAATTTTGAGTTTTTGATGTTTCAGCCCAATGTATATGGATTTTTTTGGGTTTG 352 ********************************* ************************** consensus_5036#0 GATTGAAATGTTGTACTTGATACTTCGATGGTGTTTCATATTTTTATTTACTAGTGAGTG 479 consensus_5036#1 GATTGAAATGTTGTACTTGATAAAAAAAAAAAA--------------------------- 385 ********************** * consensus_5036#0 TGCACGTGCAAGGCACGTTAACATATATTGAATGGAGTAA 519 consensus_5036#1 ---------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||