These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5063#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1467 fasta sequence [CACCATGCCACCACCTGCTATTGCATTTAGCTTCTTCGATAGTGCATTTCCGTATTGAGACGGATTCACCCCTCCTCGCCTGGATCCCATAGTTTCTCTGCCTCCTTCTCGCGCAGATCCGCCATCGTCGGCGACGGGAGGGGCGGATCCGGCGACCCCTTCCCCTCCTGCACGGATCCCGTGGGCGGCTTCACTCCTCCTCGCTTGGATCCTGTCGTCTCTCCTCCCCACTGTCGCGCGGATCCTTCGTGGGTGGTGATGGGAGGTGCGGATCCGGCGATCTCTTCCCCTCTCACACGATTCTCGTCGTCTCTCCGCCCCCCTCTCGCACGGATCTGCCGCCAGCGACGACGGGAGGGCGGACCCGGCGGCCTCCCCTAGGGTGACGACGGCAATTGGTTTCAAGAGGTGCCGATGTCCATGATGAGACCGTATGCGTCTCATGGTCTCCATCACCAAAGCCGCCGATAGCGCCAAGAAGATGTACATTGCTCTTGAGCTCCCCCGATCCCCACTCGTTCCATCACCATCACTCAACGGACTCCCCGCTAGCTGTCCGGCCGGCCGGAGAGGAGGGTTCAAGCTTGCAGACGAAGGTGGACCGAGGAGAGCGCAGCCGAGTGGTGGCACTGAAGATAGTGGGCGTTTCTTCATGATTTCAGGGGAGGAGCGGATTGTTGAGTGGATTCGAGGCAGAGATGGTGGTTAGGATGGAGTGGTGATGTCATCGGAGGTTGTCTCGAATGCTGCAGTCGAGGTGTCTGAACCGAAATCTATTTTCCAACTTCGGGAGTGGAGGAGAAACTGGGTTCATGTTTTCACCGCCGCTGGTCGGAAATTGGTAAGGTTTTTGTCATGAAATTACCAATCTTAATTGAATTGGTTAGTTTTCAGTAGTTTGAATTTAGTCTTGAAGCTTAACAGCTAAAGTAGGAAACTCAACCTCTAAATGATAAATGATACTGTTCATATTGATATTTGCAAACATTCAAGTACTGTGAATTTTATTACCTCAAGGTGTTACTGTGAATTTTCCAATCAATATGACACGGTGGTTCAAAAATTGCAGATTAAATCAAATCATTAATTTCATGCTACTATGATATGATCTCATATTAATTTTGTTACCTCAATGTGTTACCGTAATGGAGTAGAACTGCATTAGAAATTCTTGAGTTATATATAAACCTAATGGAATTGTAACTGCATTAGAATTTCTTGAGTTATATATAAACCTAATGGAATTGTAACTGCATTCAGGGTTCAGTTTAATGATAACGTGGAAGTGGCTTGACCCCCGAGGAAGAGCCTCGTGATTTGTATTTTTGTATTTTCTTGTGTGTTTCTATTATTTCTATATGTATGTCTTGCCTGTGATTGTATTCGTGTATGTGTATTTTTCCCCTGCGAGAGAAATCTGTAAAATCGTGTTAGTGTGAGCGCTAAAAAATAGCGGTAGAAATAACA] [+] EMBL AK105405 [CACCATGCCACCACCTGCTATTGCATTTAGCTTCTTCGATAGTGCATTTCCGTATTGAGACGGATTCACCCCTCCTCGCCTGGATCCCATAGTTTCTCTGCCTCCTTCTCGCGCAGATCCGCCATCGTCGGCGACGGGAGGGGCGGATCCGGCGACCCCTTCCCCTCCTGCACGGATCCCGTGGGCGGCTTCACTCCTCCTCGCTTGGATCCTGTCGTCTCTCCTCCCCACTGTCGCGCGGATCCTTCGTGGGTGGTGATGGGAGGTGCGGATCCGGCGATCTCTTCCCCTCTCACACGATTCTCGTCGTCTCTCCGCCCCCCTCTCGCACGGATCTGCCGCCAGCGACGACGGGAGGGCGGACCCGGCGGCCTCCCCTAGGGTGACGACGGCAATTGGTTTCAAGAGGTGCCGATGTCCATGATGAGACCGTATGCGTCTCATGGTCTCCATCACCAAAGCCGCCGATAGCGCCAAGAAGATGTACATTGCTCTTGAGCTCCCCCGATCCCCACTCGTTCCATCACCATCACTCAACGGACTCCCCGCTAGCTGTCCGGCCGGCCGGAGAGGAGGGTTCAAGCTTGCAGACGAAGGTGGACCGAGGAGAGCGCAGCCGAGTGGTGGCACTGAAGATAGTGGGCGTTTCTTCATGATTTCAGGGGAGGAGCGGATTGTTGAGTGGATTCGAGGCAGAGATGGTGGTTAGGATGGAGTGGTGATGTCATCGGAGGTTGTCTCGAATGCTGCAGTCGAGGTGTCTGAACCGAAATCTATTTTCCAACTTCGGGAGTGGAGGAGAAACTGGGTTCATGTTTTCACCGCCGCTGGTCGGAAATTGGTAAGGTTTTTGTCATGAAATTACCAATCTTAATTGAATTGGTTAGTTTTCAGTAGTTTGAATTTAGTCTTGAAGCTTAACAGCTAAAGTAGGAAACTCAACCTCTAAATGATAAATGATACTGTTCATATTGATATTTGCAAACATTCAAGTACTGTGAATTTTATTACCTCAAGGTGTTACTGTGAATTTTCCAATCAATATGACACGGTGGTTCAAAAATTGCAGATTAAATCAAATCATTAATTTCATGCTACTATGATATGATCTCATATTAATTTTGTTACCTCAATGTGTTACCGTAATGGAGTAGAACTGCATTAGAAATTCTTGAGTTATATATAAACCTAATGGAATTGTAACTGCATTAGAATTTCTTGAGTTATATATAAACCTAATGGAATTGTAACTGCATTCAGGGTTCAGTTTAATGATAACGTGGAAGTGGCTTGACCCCCGAGGAAGAGCCTCGTGATTTGTATTTTTGTATTTTCTTGTGTGTTTCTATTATTTCTATATGTATGTCTTGCCTGTGATTGTATTCGTGTATGTGTATTTTTCCCCTGCGAGAGAAATCTGTAAAATCGTGTTAGTGTGAGCGCTAAAAAATAGCGGTAGAAATAACA] consensusID : consensus_5063#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1311 fasta sequence [CAACCAGATCCACCATGCCACCACCTGCTATTGCATTTAGCTTCTTCGATAGTGCATTTCCGTATTGAGACGGATTCACACCTCCTCGCCTGGATCCCATAGTTTCTCTGCCTCCTTCTCGCGCAGATCCGCCATCGTCGGCGACGGGAGGGGCGGATCCGGCGACCCCTTCCCCTCCTGCACGGATCCCGTGGGCGGCTTCACTCCTCCTCGCTTGGATCCTGTCGTCTCTCCTCCCCACTGTCGCGCGGATCCTTCGTGGGTGGTGATGGGAGGTGCGGATCCGGCGATCTCTTCCCCTCTCACACGATTCTCGTCGTCTCTCCGCCCCCCTCTCGCACGGATCTGCCGCCAGCGACGACGGGAGGGCGGACCCGGCGGCCTCCCCTAGGGTGACGACGGCAATTGGTTTCAAGAGGTGCCGATGTCCATGATGAGACCGTATGCGTCTCATGGTCTCCATCACCAAAGCCGCCGATAGCGCCAAGAAGATGTACATTGCTCTTGAGCTCCCCCGATCCCCACTCGTTCCATCACCATCACTCAACGGACTCCCCGCTAGCTGTCCGGCCGGCCGGAGAGGAGGGTTCAAGCTTGCAGACGAAGGTGGACCGAGGAGAGCGCAGCCGAGTGGTGGCACTGAAGATAGTGGGCGTTTCTTCATGATTTCAGGGGAGGAGCGGATTGTTGAGTGGATTCGAGGCAGAGATGGTGGTTAGGATGGAGTGGTGATGTCATCGGAGGTTGTCTCGAATGCTGCAGTCGAGGTGTCTGAACCGAAATCTATTTTCCAACTTCGGGAGTGGAGGAGAAACTGGGTTCAT-GTTTTCACCGCCGCTGGTCGGAAATTGGGTTCAGTTTAATGATAACGTGGAAGTGGCTTGACCCCCGAGGAAGAGCCTCGTGATTTGTATTTTTGTATTTTCTTGTGTGTTTCTATTATTTCTATATGTATGTCTTGCCTGTGATTGTATTCGTGTATGTGTATTTTTCCCCTGCGAGAGAAATCTGTAAAATCGTGTTAGTGTGAGCGCTAAAAAATAGCGGTAGAAATAACAGAAGAAAAGGAAAACGGAGGACTTGTGGTTTGTGGCCTTGTGGGCTTGTGGTGCACCTGGACTTGTGGGTTAGGCTTTATGGGCTTGTCGCTTGGACCCGGGCTTGCTTGTGGGCCTGTGGACAGATGTGGCCTACTGGGCAATGATCACACACAAAAGCGCGTACGGACGAAAAATCGGATCTGTGTAAACTGCGCGTACGGACGACAAATTGGTGGCGAAAGGAAAAATCCAAATCTTTTAGTTAGTTAAG] [+] EMBL AK102171 [CAACCAGATCCACCATGCCACCACCTGCTATTGCATTTAGCTTCTTCGATAGTGCATTTCCGTATTGAGACGGATTCACACCTCCTCGCCTGGATCCCATAGTTTCTCTGCCTCCTTCTCGCGCAGATCCGCCATCGTCGGCGACGGGAGGGGCGGATCCGGCGACCCCTTCCCCTCCTGCACGGATCCCGTGGGCGGCTTCACTCCTCCTCGCTTGGATCCTGTCGTCTCTCCTCCCCACTGTCGCGCGGATCCTTCGTGGGTGGTGATGGGAGGTGCGGATCCGGCGATCTCTTCCCCTCTCACACGATTCTCGTCGTCTCTCCGCCCCCCTCTCGCACGGATCTGCCGCCAGCGACGACGGGAGGGCGGACCCGGCGGCCTCCCCTAGGGTGACGACGGCAATTGGTTTCAAGAGGTGCCGATGTCCATGATGAGACCGTATGCGTCTCATGGTCTCCATCACCAAAGCCGCCGATAGCGCCAAGAAGATGTACATTGCTCTTGAGCTCCCCCGATCCCCACTCGTTCCATCACCATCACTCAACGGACTCCCCGCTAGCTGTCCGGCCGGCCGGAGAGGAGGGTTCAAGCTTGCAGACGAAGGTGGACCGAGGAGAGCGCAGCCGAGTGGTGGCACTGAAGATAGTGGGCGTTTCTTCATGATTTCAGGGGAGGAGCGGATTGTTGAGTGGATTCGAGGCAGAGATGGTGGTTAGGATGGAGTGGTGATGTCATCGGAGGTTGTCTCGAATGCTGCAGTCGAGGTGTCTGAACCGAAATCTATTTTCCAACTTCGGGAGTGGAGGAGAAACTGGGTTCAT GTTTTCACCGCCGCTGGTCGGAAATTGGGTTCAGTTTAATGATAACGTGGAAGTGGCTTGACCCCCGAGGAAGAGCCTCGTGATTTGTATTTTTGTATTTTCTTGTGTGTTTCTATTATTTCTATATGTATGTCTTGCCTGTGATTGTATTCGTGTATGTGTATTTTTCCCCTGCGAGAGAAATCTGTAAAATCGTGTTAGTGTGAGCGCTAAAAAATAGCGG ] [+] EMBL CA765111 [ aaggggGAGGCAGAGATGGTGGTTAGGATGGAGTGGTGATGTCNTCGGAGGTTGTCTCGAAAGCTGCAGTCGAGGTGTCTGAACCGAAATCTATTTTCCAACTTCGGGAGTGGAGGAGAAACTGGGTTCATNGTTTTCACCGCCGCTGGTCGGAAATTGGGTTCAGTTTAATGATAACGTGGAAGTGGCTTGACCCCCGAGGAAGAGCCTCGTGATTTGTATTTTTGTATTTTCTTGTGTGTTACTATTATTTCTATATGTATGTCTTGCCTGTGATTGTATTCGTGTATGTGTATTTTTCCACTGCGAGAGAAATCTGTAAAATCGTGTTAGTGTGAGCGCTAAAAAATAGCGGTAGAAATAACAGAAGAAAAGGAAAACGGAGGACTTGTGGTTTGTGGCCTTGTGGGCTTGTGGTGCACCTGGACTTGTGGGTTAGGCTTTATGGGCTTGTCGCTTGGACCCGGGCTTGCTTGTGGGCCTGTGGACAGATGTGGCCTACTGGGCAATGATCACACACAAAAGCGCGTACGGACGAAAAATCGGATCTGTGTAAACTGCGCGTACGGACGACAAATTGGTGGCGAAAGGAAAAATCCAAATCTTTTAGTTAGTTAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5063#0 ----------CACCATGCCACCACCTGCTATTGCATTTAGCTTCTTCGATAGTGCATTTC 50 consensus_5063#1 CAACCAGATCCACCATGCCACCACCTGCTATTGCATTTAGCTTCTTCGATAGTGCATTTC 60 ************************************************** consensus_5063#0 CGTATTGAGACGGATTCACCCCTCCTCGCCTGGATCCCATAGTTTCTCTGCCTCCTTCTC 110 consensus_5063#1 CGTATTGAGACGGATTCACACCTCCTCGCCTGGATCCCATAGTTTCTCTGCCTCCTTCTC 120 ******************* **************************************** consensus_5063#0 GCGCAGATCCGCCATCGTCGGCGACGGGAGGGGCGGATCCGGCGACCCCTTCCCCTCCTG 170 consensus_5063#1 GCGCAGATCCGCCATCGTCGGCGACGGGAGGGGCGGATCCGGCGACCCCTTCCCCTCCTG 180 ************************************************************ consensus_5063#0 CACGGATCCCGTGGGCGGCTTCACTCCTCCTCGCTTGGATCCTGTCGTCTCTCCTCCCCA 230 consensus_5063#1 CACGGATCCCGTGGGCGGCTTCACTCCTCCTCGCTTGGATCCTGTCGTCTCTCCTCCCCA 240 ************************************************************ consensus_5063#0 CTGTCGCGCGGATCCTTCGTGGGTGGTGATGGGAGGTGCGGATCCGGCGATCTCTTCCCC 290 consensus_5063#1 CTGTCGCGCGGATCCTTCGTGGGTGGTGATGGGAGGTGCGGATCCGGCGATCTCTTCCCC 300 ************************************************************ consensus_5063#0 TCTCACACGATTCTCGTCGTCTCTCCGCCCCCCTCTCGCACGGATCTGCCGCCAGCGACG 350 consensus_5063#1 TCTCACACGATTCTCGTCGTCTCTCCGCCCCCCTCTCGCACGGATCTGCCGCCAGCGACG 360 ************************************************************ consensus_5063#0 ACGGGAGGGCGGACCCGGCGGCCTCCCCTAGGGTGACGACGGCAATTGGTTTCAAGAGGT 410 consensus_5063#1 ACGGGAGGGCGGACCCGGCGGCCTCCCCTAGGGTGACGACGGCAATTGGTTTCAAGAGGT 420 ************************************************************ consensus_5063#0 GCCGATGTCCATGATGAGACCGTATGCGTCTCATGGTCTCCATCACCAAAGCCGCCGATA 470 consensus_5063#1 GCCGATGTCCATGATGAGACCGTATGCGTCTCATGGTCTCCATCACCAAAGCCGCCGATA 480 ************************************************************ consensus_5063#0 GCGCCAAGAAGATGTACATTGCTCTTGAGCTCCCCCGATCCCCACTCGTTCCATCACCAT 530 consensus_5063#1 GCGCCAAGAAGATGTACATTGCTCTTGAGCTCCCCCGATCCCCACTCGTTCCATCACCAT 540 ************************************************************ consensus_5063#0 CACTCAACGGACTCCCCGCTAGCTGTCCGGCCGGCCGGAGAGGAGGGTTCAAGCTTGCAG 590 consensus_5063#1 CACTCAACGGACTCCCCGCTAGCTGTCCGGCCGGCCGGAGAGGAGGGTTCAAGCTTGCAG 600 ************************************************************ consensus_5063#0 ACGAAGGTGGACCGAGGAGAGCGCAGCCGAGTGGTGGCACTGAAGATAGTGGGCGTTTCT 650 consensus_5063#1 ACGAAGGTGGACCGAGGAGAGCGCAGCCGAGTGGTGGCACTGAAGATAGTGGGCGTTTCT 660 ************************************************************ consensus_5063#0 TCATGATTTCAGGGGAGGAGCGGATTGTTGAGTGGATTCGAGGCAGAGATGGTGGTTAGG 710 consensus_5063#1 TCATGATTTCAGGGGAGGAGCGGATTGTTGAGTGGATTCGAGGCAGAGATGGTGGTTAGG 720 ************************************************************ consensus_5063#0 ATGGAGTGGTGATGTCATCGGAGGTTGTCTCGAATGCTGCAGTCGAGGTGTCTGAACCGA 770 consensus_5063#1 ATGGAGTGGTGATGTCATCGGAGGTTGTCTCGAATGCTGCAGTCGAGGTGTCTGAACCGA 780 ************************************************************ consensus_5063#0 AATCTATTTTCCAACTTCGGGAGTGGAGGAGAAACTGGGTTCATGTTTTCACCGCCGCTG 830 consensus_5063#1 AATCTATTTTCCAACTTCGGGAGTGGAGGAGAAACTGGGTTCATGTTTTCACCGCCGCTG 840 ************************************************************ consensus_5063#0 GTCGGAAATTGGTAAGGTTTTTGTCATGAAATTACCA-ATCTTAATTGAATTGGTTAGTT 889 consensus_5063#1 GTCGGAAATTGGGTTCAGTTTAATGATAACGTGGAAGTGGCTTGACCCCCGAGGAAGAGC 900 ************ *** * ** * * *** * ** consensus_5063#0 TTCAGTAGTTTGAATTTAGTCTTGAAGCTTAACAGCTAAAGTAGGAAACTCAACCTCTAA 949 consensus_5063#1 CTC-GTGATTTGTATTT----TTGTATTTT-----CTTGTGT-GTTTCTATTATTTCTAT 949 ** ** **** **** *** * ** ** ** * * **** consensus_5063#0 ATGATAAATGATACTGTTCATATTGATATTTGCAAACATTCAAGTACTGTGAATTTTATT 1009 consensus_5063#1 ATGT---ATG-TCTTGCCTGTGATTGTATTCGTGTA-----------TGTGTATTTTTCC 994 *** *** * ** * * **** * * **** ***** consensus_5063#0 ACCTCAAGGTGTTACTGTGAATTTTCCAATCAATATGACACGGTGGTTCAAAAATTGCAG 1069 consensus_5063#1 CCTGCGAGAGAAATCTGTAAA-------ATCGTGTTAGTGTGAGCGCTAAAAAATAGCGG 1047 * * ** **** ** *** * * * * ****** ** * consensus_5063#0 ATTAAATCAAATCATTAATTTCATGCTACTATGATATGATCTCATATTAATTTTGTTACC 1129 consensus_5063#1 TAGAAATAACAGAAGAAAAGGAAAACGGAGGACTTGTGGTTTG----TGGCCTTGTGGGC 1103 **** * * * ** * * * ** * * * **** * consensus_5063#0 TCAATGTGTTACCGTAATGGAGTAGAACTGCATTAGAAATTCTTGAGTTATATATAAACC 1189 consensus_5063#1 TTGTGGTGCACCTGGACTTGTGGGTTAG-GCTTTATGGGCTTGTCGCTTGGACCCGGGCT 1162 * *** * * * * * * * ** *** * * ** * * consensus_5063#0 TA---ATGGAATTGTAACTGCATTAGAATTTCTTGAGTTATATATAAACCTAATGGAATT 1246 consensus_5063#1 TGCTTGTGGGCCTGTGGACAGAT-GTGGCCTACTGGGCAATGATCACACACAA---AAGC 1218 * *** *** ** * ** * ** * ** ** ** consensus_5063#0 GTAACTGCATTCAGGGTTCAGTTTAATGATAACGTGGAAGTGGCTTGACCCCCGAGGAAG 1306 consensus_5063#1 GCGTACGGACGAAAAATCGGATCTGTGTAAACTGCGCGTACGGACGACAAATTGGTGGCG 1278 * * * * * * * * * * * ** * * * consensus_5063#0 AGCCTCGTGATTTGTATTTTTGTATTTTCTTGTGTGTTTCTATTATTTCTATATGTATGT 1366 consensus_5063#1 AAAGGAAAAATCCAAATCTTT-TAGTTAGTTAAG-------------------------- 1311 * ** ** *** ** ** ** * consensus_5063#0 CTTGCCTGTGATTGTATTCGTGTATGTGTATTTTTCCCCTGCGAGAGAAATCTGTAAAAT 1426 consensus_5063#1 ------------------------------------------------------------ consensus_5063#0 CGTGTTAGTGTGAGCGCTAAAAAATAGCGGTAGAAATAACA 1467 consensus_5063#1 ----------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||