cluster # 5264

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Oryza sativa
cluster # 5264 cluster # 5264 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5264#0 length = 1247 sequences # 2

consensus_5264#1 length = 263 sequences # 1

consensusID : consensus_5264#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1247
fasta sequence

                              [GCCAAAGCACTGCACTGCACAAGCAGCTTCCTCGCCTTCGCATCTACTACTCCCCCCAAAATGGCGCATCCGGTGGCTGAGGCCGACGAGAAGAGCCCCTTCGGCCGCCTCACCGCGGAGGAGTTCTACGCGCGCCACGGCGTGCTGCACACCTCCTCCACCTTCGTCAACCCGCGCGGCCTCCGCATCTTCACCCAGCGCTGGGTCCCCGCGGGGGGCGACGCGCCCCTCCTCGGCGCCATCGCCGTCGTCCACGGCTTCACGGGGGAGTCCAGCTGGACGGTGCAGCTCACCGCCGTCCATTTCGCCAAGGCCGGGTTCGCCGTCGCCGCCGTCGACCACCAGGGCCACGGCTTCTCCGAGGGCCTACAGGGGCACATCCCCGACATCGTCCCCGTGCTCGAGGACTGCGAGGCCGCGTTCGCCCCGTTCCGCGCCGACTACCCGCCGCCGCTTCCGTGCTTCCTCTACGGGGAGTCCCTCGGCGGCGCCATCGCGCTGCTGCTCCACCT-CGGGACAAGGAGCGGTGGCGCGACGGGGCGGTGCTCAACGGCGCCATGTGCGGGGTCAGCCCCAGGTTCATGCCCCCCTGGCCGCTCGAGCACCTGCTGTGGGCGGCGGCGGCCGTGGCGCCCACGTGGCGGCTCGCCTTCACCCGGGGGAACATCCCCGACCGCTCCTTCAAGGTGCCGTGGAAGCGCGCCCTGGCGGTGGCGAGCCCGCGCCGCACCACGGCGCCGCCCCGCGCCGCCACGGCGCTGGAGCTCCTCCGCGTGTGCCGCGAGCTCCAGTCCCGGTTCGAGGAGGTGGAGCTCCCGCTCCTGGTCGTCCACGGCGGCGAGGACACCGTGTGCGACCCCGGGTGCGCGGAGGAGCTCCACCGCCGCGCCGGGAGCAAGGACAAGACGCTGCGGGTGTACCCGGGGATGTGGCACCAGCTGGTCGGCGAGCCCGAGGAGAACGTCGACAAGGTGTTCGGCGACGTCCTCGACTGGCTCAAGTCCCACGCCGCCGCCGCTGCCGCCGCGCGTGGCGAGGGGCAGCAGTAGTTCGGTCGGTCACGCGTGCCGCGTGCTTGGGTAATTCATGGCGGATTCAAAGCAAAAGTACGGGGGCGCAATAAAAGGTTGTGGAGTTGATTGGTGAGACGAGATCGATCTGGTCCCGGTGTATCTCCGTCTCTGCGTGTGGCCATGTTCCATCTCCGTGTCTCTCTGCTCGTATTAGTCCATGAATTGAATGCCAAA]

[+] EMBL AK100118             [GCCAAAGCACTGCACTGCACAAGCAGCTTCCTCGCCTTCGCATCTACTACTCCCCCCAAAATGGCGCATCCGGTGGCTGAGGCCGACGAGAAGAGCCCCTTCGGCCGCCTCACCGCGGAGGAGTTCTACGCGCGCCACGGCGTGCTGCACACCTCCTCCACCTTCGTCAACCCGCGCGGCCTCCGCATCTTCACCCAGCGCTGGGTCCCCGCGGGGGGCGACGCGCCCCTCCTCGGCGCCATCGCCGTCGTCCACGGCTTCACGGGGGAGTCCAGCTGGACGGTGCAGCTCACCGCCGTCCATTTCGCCAAGGCCGGGTTCGCCGTCGCCGCCGTCGACCACCAGGGCCACGGCTTCTCCGAGGGCCTACAGGGGCACATCCCCGACATCGTCCCCGTGCTCGAGGACTGCGAGGCCGCGTTCGCCCCGTTCCGCGCCGACTACCCGCCGCCGCTTCCGTGCTTCCTCTACGGGGAGTCCCTCGGCGGCGCCATCGCGCTGCTGCTCCACCT CGGGACAAGGAGCGGTGGCGCGACGGGGCGGTGCTCAACGGCGCCATGTGCGGGGTCAGCCCCAGGTTCATGCCCCCCTGGCCGCTCGAGCACCTGCTGTGGGCGGCGGCGGCCGTGGCGCCCACGTGGCGGCTCGCCTTCACCCGGGGGAACATCCCCGACCGCTCCTTCAAGGTGCCGTGGAAGCGCGCCCTGGCGGTGGCGAGCCCGCGCCGCACCACGGCGCCGCCCCGCGCCGCCACGGCGCTGGAGCTCCTCCGCGTGTGCCGCGAGCTCCAGTCCCGGTTCGAGGAGGTGGAGCTCCCGCTCCTGGTCGTCCACGGCGGCGAGGACACCGTGTGCGACCCCGGGTGCGCGGAGGAGCTCCACCGCCGCGCCGGGAGCAAGGACAAGACGCTGCGGGTGTACCCGGGGATGTGGCACCAGCTGGTCGGCGAGCCCGAGGAGAACGTCGACAAGGTGTTCGGCGACGTCCTCGACTGGCTCAAGTCCCACGCCGCCGCCGCTGCCGCCGCGCGTGGCGAGGGGCAGCAGTAGTTCGGTCGGTCACGCGTGCCGCGTGCTTGGGTAATTCATGGCGGATTCAAAGCAAAAGTACGGGGGCGCAATAAAAGGTTGTGGAGTTGATTGGTGAGACGAGATCGATCTGGTCCCGGTGTATCTCCGTCTCTGCGTGTGGCCATGTTCCATCTCCGTGTCTCTCTGCTCGTATTAGTCCATGAATTGAATGCCAAA]
[+] EMBL AK105905             [ CCAAAGCACTGCACTGCACAAGCAGCTTCCTCGCCTTCGCATCTACTACTCCCCCCAAAATGGCGCATCCGGTGGCTGAGGCCGACGAGAAGAGCCCCTTCGGCCGCCTCACCGCGGAGGAGTTCTACGCGCGCCACGGCGTGCTGCACACCTCCTCCACCTTCGTCAACCCGCGCGGCCTCCGCATCTTCACCCAGCGCTGGGTCCCCGCGGGGGGCGACGCGCCCCTCCTCGGCGCCATCGCCGTCGTCCACGGCTTCACGGGGGAGTCCAGCTGGACGGTGCAGCTCACCGCCGTCCACTTCGCCAAGGCCGGGTTCGCCGTCGCCGCCGTCGACCACCAGGGCCACGGCTTCTCCGAGGGCCTACAGGGGCACATCCCCGACATCGTCCCCGTGCTCGAGGACTGCGAGGCCGCGTTCGCCCCGTTCCGCGCCGACTACCCGCCGCCGCTTCCGTGCTTCCTCTACGGGGAGTCCCTCGGCGGCGCCATCGCGCTGCTGCTCCACCTCCGGGACAAGGAGCGGTGGCGCGACGGGGCGGTGCTCAACGGCGCCATGTGCGGGGTCAGCCCCAGGTTCATGCCCCCCTGGCCGCTCGAGCACCTGCTGTGGGCGGCGGCGGCCGTGGCGCCCACGTGGCGGCTCGCCTTCACCCGGGGGAACATCCCCGACCGCTCCTTCAAGGTGCCGTGGAAGCGCGCCCTGGCGGTGGCGAGCCCGCGCCGCACCACGGCGCCGCCCCGCGCCGCCACGGCGCTGGAGCTCCTCCGCGTGTGCCGCGAGCTCCAGTCCCGGTTCGAGGAGGTGGAGCTCCCGCTCCTGGTCGTCCACGGCGGCGAGGACACCGTGTGCGACCCCGGGTGCGCGGAGGAGCTCCACCGCCGCGCCGGGAGCAAGGACAAGACGCTGCGGGTGTACCCGGGGATGTGGCACCAGCTGGTCGGCGAGCCCGAGGAGAACGTCGACAAGGTGTTCGGCGACGTCCTCGACTGGCTCAAGTCCCACGCCGCCGCCGCTGCCGCCGCGCGTGGCGAGGGGCAGCAGTAGTTCGGTCGGTCACGCGTGCCGCGTGCTTGGGTAATTCATGGCGGATTCAAAGCAAAAGTACGGGGGCGCAATAAAAGGTTGTGGAGTTGATTGGTGAGACGAGATCGATCTGGTCCCGGTGTATCTCCGTCTCTGCGTGTGGCCATGTTCCATCTCCGTGTCTCTCTGCTCGTATTAGTCCATGAATTGAATGCCAAA]




>consensus_5264#0
GCCAAAGCACTGCACTGCACAAGCAGCTTCCTCGCCTTCGCATCTACTACTCCCCCCAAA
ATGGCGCATCCGGTGGCTGAGGCCGACGAGAAGAGCCCCTTCGGCCGCCTCACCGCGGAG
GAGTTCTACGCGCGCCACGGCGTGCTGCACACCTCCTCCACCTTCGTCAACCCGCGCGGC
CTCCGCATCTTCACCCAGCGCTGGGTCCCCGCGGGGGGCGACGCGCCCCTCCTCGGCGCC
ATCGCCGTCGTCCACGGCTTCACGGGGGAGTCCAGCTGGACGGTGCAGCTCACCGCCGTC
CATTTCGCCAAGGCCGGGTTCGCCGTCGCCGCCGTCGACCACCAGGGCCACGGCTTCTCC
GAGGGCCTACAGGGGCACATCCCCGACATCGTCCCCGTGCTCGAGGACTGCGAGGCCGCG
TTCGCCCCGTTCCGCGCCGACTACCCGCCGCCGCTTCCGTGCTTCCTCTACGGGGAGTCC
CTCGGCGGCGCCATCGCGCTGCTGCTCCACCTCGGGACAAGGAGCGGTGGCGCGACGGGG
CGGTGCTCAACGGCGCCATGTGCGGGGTCAGCCCCAGGTTCATGCCCCCCTGGCCGCTCG
AGCACCTGCTGTGGGCGGCGGCGGCCGTGGCGCCCACGTGGCGGCTCGCCTTCACCCGGG
GGAACATCCCCGACCGCTCCTTCAAGGTGCCGTGGAAGCGCGCCCTGGCGGTGGCGAGCC
CGCGCCGCACCACGGCGCCGCCCCGCGCCGCCACGGCGCTGGAGCTCCTCCGCGTGTGCC
GCGAGCTCCAGTCCCGGTTCGAGGAGGTGGAGCTCCCGCTCCTGGTCGTCCACGGCGGCG
AGGACACCGTGTGCGACCCCGGGTGCGCGGAGGAGCTCCACCGCCGCGCCGGGAGCAAGG
ACAAGACGCTGCGGGTGTACCCGGGGATGTGGCACCAGCTGGTCGGCGAGCCCGAGGAGA
ACGTCGACAAGGTGTTCGGCGACGTCCTCGACTGGCTCAAGTCCCACGCCGCCGCCGCTG
CCGCCGCGCGTGGCGAGGGGCAGCAGTAGTTCGGTCGGTCACGCGTGCCGCGTGCTTGGG
TAATTCATGGCGGATTCAAAGCAAAAGTACGGGGGCGCAATAAAAGGTTGTGGAGTTGAT
TGGTGAGACGAGATCGATCTGGTCCCGGTGTATCTCCGTCTCTGCGTGTGGCCATGTTCC
ATCTCCGTGTCTCTCTGCTCGTATTAGTCCATGAATTGAATGCCAAA

consensusID : consensus_5264#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 263
fasta sequence

                              [CNGNGNACGCGTGGGCGGACGCGTNGGGCACTGCACAAGCAGCTTCCTCGCCTTCGCATCTACTACTCCCCCCAAAATGGCGCATCCGGTGGCTGAGGCCGACGAGAAGAGCCCCTTCGGCCGCCTCACCGCGGAGGAGTTCTACGCGCGCCACGGCGTGCTGCACAACTCCTCCAACTTCGTCAAACCCGCGCGGCCTCCGCATCTTCAACCAGCGCTGGGTCCCCGCCGGGGGGCGAAGCGCCCTTCCTCGGNGGCAATCG]

[+] EMBL AU070013             [CNGNGNACGCGTGGGCGGACGCGTNGGGCACTGCACAAGCAGCTTCCTCGCCTTCGCATCTACTACTCCCCCCAAAATGGCGCATCCGGTGGCTGAGGCCGACGAGAAGAGCCCCTTCGGCCGCCTCACCGCGGAGGAGTTCTACGCGCGCCACGGCGTGCTGCACAACTCCTCCAACTTCGTCAAACCCGCGCGGCCTCCGCATCTTCAACCAGCGCTGGGTCCCCGCCGGGGGGCGAAGCGCCCTTCCTCGGNGGCAATCG]




>consensus_5264#1
CNGNGNACGCGTGGGCGGACGCGTNGGGCACTGCACAAGCAGCTTCCTCGCCTTCGCATC
TACTACTCCCCCCAAAATGGCGCATCCGGTGGCTGAGGCCGACGAGAAGAGCCCCTTCGG
CCGCCTCACCGCGGAGGAGTTCTACGCGCGCCACGGCGTGCTGCACAACTCCTCCAACTT
CGTCAAACCCGCGCGGCCTCCGCATCTTCAACCAGCGCTGGGTCCCCGCCGGGGGGCGAA
GCGCCCTTCCTCGGNGGCAATCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5264#0      --------------GCCAAAGCACTG--CACTGCACAAGCAGCTTCCTCGCCTTCGCATC 44
consensus_5264#1      CNGNGNACGCGTGGGCGGACGCGTNGGGCACTGCACAAGCAGCTTCCTCGCCTTCGCATC 60
                                    **  * **   *  ********************************

consensus_5264#0      TACTACTCCCCCCAAAATGGCGCATCCGGTGGCTGAGGCCGACGAGAAGAGCCCCTTCGG 104
consensus_5264#1      TACTACTCCCCCCAAAATGGCGCATCCGGTGGCTGAGGCCGACGAGAAGAGCCCCTTCGG 120
                      ************************************************************

consensus_5264#0      CCGCCTCACCGCGGAGGAGTTCTACGCGCGCCACGGCGTGCTGCACACCTCCTCCACCTT 164
consensus_5264#1      CCGCCTCACCGCGGAGGAGTTCTACGCGCGCCACGGCGTGCTGCACAACTCCTCCAACTT 180
                      *********************************************** ******** ***

consensus_5264#0      CGTCAA-CCCGCGCGGCCTCCGCATCTTCACCCAGCGCTGGGTCCCCGC-GGGGGGCGAC 222
consensus_5264#1      CGTCAAACCCGCGCGGCCTCCGCATCTTCAACCAGCGCTGGGTCCCCGCCGGGGGGCGAA 240
                      ****** *********************** ****************** ********* 

consensus_5264#0      GCGCCCCTCCTCGGCGCCA-TCGCCGTCGTCCACGGCTTCACGGGGGAGTCCAGCTGGAC 281
consensus_5264#1      GCGCCCTTCCTCGGNGGCAATCG------------------------------------- 263
                      ****** ******* * ** ***                                     

consensus_5264#0      GGTGCAGCTCACCGCCGTCCATTTCGCCAAGGCCGGGTTCGCCGTCGCCGCCGTCGACCA 341
consensus_5264#1      ------------------------------------------------------------
                                                                                  

consensus_5264#0      CCAGGGCCACGGCTTCTCCGAGGGCCTACAGGGGCACATCCCCGACATCGTCCCCGTGCT 401
consensus_5264#1      ------------------------------------------------------------
                                                                                  

consensus_5264#0      CGAGGACTGCGAGGCCGCGTTCGCCCCGTTCCGCGCCGACTACCCGCCGCCGCTTCCGTG 461
consensus_5264#1      ------------------------------------------------------------
                                                                                  

consensus_5264#0      CTTCCTCTACGGGGAGTCCCTCGGCGGCGCCATCGCGCTGCTGCTCCACCTCGGGACAAG 521
consensus_5264#1      ------------------------------------------------------------
                                                                                  

consensus_5264#0      GAGCGGTGGCGCGACGGGGCGGTGCTCAACGGCGCCATGTGCGGGGTCAGCCCCAGGTTC 581
consensus_5264#1      ------------------------------------------------------------
                                                                                  

consensus_5264#0      ATGCCCCCCTGGCCGCTCGAGCACCTGCTGTGGGCGGCGGCGGCCGTGGCGCCCACGTGG 641
consensus_5264#1      ------------------------------------------------------------
                                                                                  

consensus_5264#0      CGGCTCGCCTTCACCCGGGGGAACATCCCCGACCGCTCCTTCAAGGTGCCGTGGAAGCGC 701
consensus_5264#1      ------------------------------------------------------------
                                                                                  

consensus_5264#0      GCCCTGGCGGTGGCGAGCCCGCGCCGCACCACGGCGCCGCCCCGCGCCGCCACGGCGCTG 761
consensus_5264#1      ------------------------------------------------------------
                                                                                  

consensus_5264#0      GAGCTCCTCCGCGTGTGCCGCGAGCTCCAGTCCCGGTTCGAGGAGGTGGAGCTCCCGCTC 821
consensus_5264#1      ------------------------------------------------------------
                                                                                  

consensus_5264#0      CTGGTCGTCCACGGCGGCGAGGACACCGTGTGCGACCCCGGGTGCGCGGAGGAGCTCCAC 881
consensus_5264#1      ------------------------------------------------------------
                                                                                  

consensus_5264#0      CGCCGCGCCGGGAGCAAGGACAAGACGCTGCGGGTGTACCCGGGGATGTGGCACCAGCTG 941
consensus_5264#1      ------------------------------------------------------------
                                                                                  

consensus_5264#0      GTCGGCGAGCCCGAGGAGAACGTCGACAAGGTGTTCGGCGACGTCCTCGACTGGCTCAAG 1001
consensus_5264#1      ------------------------------------------------------------
                                                                                  

consensus_5264#0      TCCCACGCCGCCGCCGCTGCCGCCGCGCGTGGCGAGGGGCAGCAGTAGTTCGGTCGGTCA 1061
consensus_5264#1      ------------------------------------------------------------
                                                                                  

consensus_5264#0      CGCGTGCCGCGTGCTTGGGTAATTCATGGCGGATTCAAAGCAAAAGTACGGGGGCGCAAT 1121
consensus_5264#1      ------------------------------------------------------------
                                                                                  

consensus_5264#0      AAAAGGTTGTGGAGTTGATTGGTGAGACGAGATCGATCTGGTCCCGGTGTATCTCCGTCT 1181
consensus_5264#1      ------------------------------------------------------------
                                                                                  

consensus_5264#0      CTGCGTGTGGCCATGTTCCATCTCCGTGTCTCTCTGCTCGTATTAGTCCATGAATTGAAT 1241
consensus_5264#1      ------------------------------------------------------------
                                                                                  

consensus_5264#0      GCCAAA 1247
consensus_5264#1      ------