These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5320#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1251 fasta sequence [AGCGCAGACCACACACGATCTCACTACAATAGTGCTAGCTACGACGAGAGTGTACTAGGACGATGAGCCAGGAGCAGCCGAGGAGGCCGTCGGAGAAGGCGGCCGGCGGCGGCGGCGGCGAGCAGGGGATCCGGTATGGCGACGTGTTCCCGGTGACCGGAAGCCTCGCGGCCAAGCCCATCGCCCCGCGGGACGCGGCGACGATGCAGTCGGCGGAGAACCTCGTGCTGGGGAAGACGGTCAAGGGCGGCCCCGCCGCCGCCATGGAGTCCGCGGCGAGTCGTAACGAGGAGATGGGCGTCGTCGGGCATGACCAGGCCACGGACGCCGCCGCCGAGCAGGGCGTCAACGTCTCCGACACCCTCGTCCCCGGCGGCGGCCGCATCGTCACCGAGTTCGTCGCCGGCCAGGCGGTGGGTCACTACGTGGAGCAGGACGATGGCGCCGCCGTGGTTGCAGGAGTCGTCGGCGCCGCCCCCGGCGCGGTACGGGTGGAGGAACCTGCGAAGATAACAATCGGCGAGGCGCTGGAGGCGGCGGCGCTGGCGGCAGGAGGGACGCCGGTGGAACGCAGCGACGCGGCGGCCATTCAGGCGGCCGAAGCAAAAGCCACCGGCACGGACACCTACATGCCCGGCGGCTTGGCGGCGCAGGCGCAGTCCGCCGCCGTGGCCAACCTCTGGACGGCGCGCGACGCCGACAAGACCAAGCTCGGCGACGTCCTCTCGAACGCGACGGCGAAGCTCGCGGCGGACAAGGAGGTGGAGAGCGGCGACGCGGCGAGGGTGGCCGGAGCGGAGATGCGCAACAAGCCCGGCGCGGCGGCGAGGCCGGGCGGCGTGGCCGCGTCCATGGCCGCGGCCGCGCGCCTCAACCGCGGCCCAACGACATGAGTGGATACGATCCACGCATCGATCCATGTGTATCAAACAGCTCGTGTCGCGACGCGAGCGCGATGTAAAATTAACACGCTTCGGTGTACGTTTTATATGCTTCCATCCCTTCTAGTTTCCGTTGTTGCATTGCATATGGCCATATGGGTGGCTGAAGCTATGTTAGAATCTGTCAGAAGCCGTTTCTTTTCAGTTAGCCTGTAGCTGTTCTCTAGCTAGTTCTTTGGTTCGGTTGGACTGAATTGGATCGTGGGAGTACGGTCAGGAGTGGATCCAGATCAATCAGGTGTTTTTTTTCTGTTATGCATGTAACAAAGTCTGTAATCGAGGAGAATAAATAGAAAAACCAGAAAAGCTT] [+] EMBL AK106743 [AGCGCAGACCACACACGATCTCACTACAATAGTGCTAGCTACGACGAGAGTGTACTAGGACGATGAGCCAGGAGCAGCCGAGGAGGCCGTCGGAGAAGGCGGCCGGCGGCGGCGGCGGCGAGCAGGGGATCCGGTATGGCGACGTGTTCCCGGTGACCGGAAGCCTCGCGGCCAAGCCCATCGCCCCGCGGGACGCGGCGACGATGCAGTCGGCGGAGAACCTCGTGCTGGGGAAGACGGTCAAGGGCGGCCCCGCCGCCGCCATGGAGTCCGCGGCGAGTCGTAACGAGGAGATGGGCGTCGTCGGGCATGACCAGGCCACGGACGCCGCCGCCGAGCAGGGCGTCAACGTCTCCGACACCCTCGTCCCCGGCGGCGGCCGCATCGTCACCGAGTTCGTCGCCGGCCAGGCGGTGGGTCACTACGTGGAGCAGGACGATGGCGCCGCCGTGGTTGCAGGAGTCGTCGGCGCCGCCCCCGGCGCGGTACGGGTGGAGGAACCTGCGAAGATAACAATCGGCGAGGCGCTGGAGGCGGCGGCGCTGGCGGCAGGAGGGACGCCGGTGGAACGCAGCGACGCGGCGGCCATTCAGGCGGCCGAAGCAAAAGCCACCGGCACGGACACCTACATGCCCGGCGGCTTGGCGGCGCAGGCGCAGTCCGCCGCCGTGGCCAACCTCTGGACGGCGCGCGACGCCGACAAGACCAAGCTCGGCGACGTCCTCTCGAACGCGACGGCGAAGCTCGCGGCGGACAAGGAGGTGGAGAGCGGCGACGCGGCGAGGGTGGCCGGAGCGGAGATGCGCAACAAGCCCGGCGCGGCGGCGAGGCCGGGCGGCGTGGCCGCGTCCATGGCCGCGGCCGCGCGCCTCAACCGCGGCCCAACGACATGAGTGGATACGATCCACGCATCGATCCATGTGTATCAAACAGCTCGTGTCGCGACGCGAGCGCGATGTAAAATTAACACGCTTCGGTGTACGTTTTATATGCTTCCATCCCTTCTAGTTTCCGTTGTTGCATTGCATATGGCCATATGGGTGGCTGAAGCTATGTTAGAATCTGTCAGAAGCCGTTTCTTTTCAGTTAGCCTGTAGCTGTTCTCTAGCTAGTTCTTTGGTTCGGTTGGACTGAATTGGATCGTGGGAGTACGGTCAGGAGTGGATCCAGATCAATCAGGTGTTTTTTTTCTGTTATGCATGTAACAAAGTCTGTAATCGAGGAGAATAAATAGAAAAACCAGAAAAGCTT] consensusID : consensus_5320#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 703 fasta sequence [GGTCAAGGGCGGCCCNGCCCGCCGCCATGGAGTCCGCGGCGAGTCGTAACGA-GGAGATGGGCGTCGTCGGGC-ATGACCAGGCCACGGACGCCGCCGCCGAGCAGGGCGTCAACGTCTCCGACACCCTCGTCCCCGGCGGCGGCCGCATCGTCACCGAGTTCGTCGCCGGCCAGGTCACACACTTTGTCGTCGATCGACGTCTCTCCGCTGTGCGTGCAGCGTGAACGATCTCCCTTTTCTTTCTTTTTTTTTTTTTTTTTGCAGGCGGTGGGTCACTACGTGGAGCAGGACGATGGCGCCGCCGTGGTTGCAGGAGTCGTCGGCGCCGCCCCCGGCGCGGTACGGGTGGAGGAACCTGCGAAGATAACAATCGGCGAGGCGCTGGAGGCGGCGGCGCTGGCGGCAGGAGGGACGCCGGTGGAACGCAGCGACGCGGCGGCCATTCAGGCGGCCGAAGCAAAAGCCACCGGCACGGACACCTACATGCCCGGCGGCTTGGCGGCGCAGGCGCAGTCCGCCGCCGTGGCCAACCTCTGGACGGCGCGCGACGCCGACAAGACCAAGCTCGGCGACGTCCTCTCGAACGCGACGGCGAAGCTCGCGGCGGACAAGGAGGTGGAGAGCGGCGACGCGGCGAGGGTGGCCGGAGCGGAGACGCGCAACAAGCCCGGCGCGGCGGCGAGGCCGGGCGGCGTGGCCGCGT] [-] EMBL BI305977 [GGTCAAGGGCGGCCCNGCCCGCCGCCATGGAGTCCGCGGCGAGTCGTAACGA GGAGATGGGCGTCGTCGGGC ATGACCAGGCCACGGACGCCGCCGCCGAGCAGGGCGTCAACGTCTCCGACACCCTCGTCCCCGGCGGCGGCCGCATCGTCACCGAGTTCGTCGCCGGCCAGGTCACACACTTTGTCGTCGATCGACGTCTCTCCGCTGTGCGTGCAGCGTGAACGATCTCCCTTTTCTTTCTTTTTTTTTTTTTTTTTGCAGGCGGTGGGTCACTACGTGGAGCAGGACGATGGCGCCGCCGTGGTTGCAGGAGTCGTCGGCGCCGCCCCCGGCGCGGTACGGGTGGAGGAACCTGCGAAGATAACAATCGGCGAGGCGCTGGAGGCGGCGGCGCTGGCGGCAGGAGGGACGCCGGTGGAACGCAGCGACGCGGCGGCCATTCAGGCGGCCGAAGCAAAAGCCACCGGCACGGACACCTACATGCCCGGCGGCTTGGCGGCGCAGGCGCAGTCCGCCGCCGTGGCCAACCTCTGGACGGCGCGCGACGCCGACAAGACCAAGCTCGGCGACGTCCTCTCGAACGCGACGGCGAAGCTCGCGGCGGACAAGGAGGTGGAGAGCGGCGACGCGGCGAGGGTGGCCGGAGCGGAGACGCGCAACAAGCCCGGCGCGGCGGCGAGGCCGGGCGGCGTGGCCGCG ] [-] EMBL CB965706 [ TCCGCGGCGAGTCGTAACGAGGGAGATGGGCGTCGTCGGGCAATGACCAGGCCACGGACGCCGCCGCCGAGCAGGGCGTCAACGTCTCCGACACCCTCGTCCCCGGCGGCGGCCGCATCGTCACCGAGTTCGTCGCCGGCCAGGTCACACACTTCGTCGTCGATCGACGTCTCTCCGCTGTGCGTGCAGCGTGAACGATCTCCCTGTTCTTTCTTTTTTTTTTTTTTTTTGCAGGCGGTGGGTCACTACGTGGAGCAGGACGATGGCGCCGCCGTGGTTGCAGGAGTCGTCGGCGCCGCCCCCGGCGCGGTACGGGTGGAGGAACCTGCGAAGATAACAATCGGCGAGGCGCTGGAGGCGGCGGCGCTGGCGGCAGGAGGGACGCCGGTGGAACGCAGCGACGCGGCGGCCATTCAGGCGGCCGAAGCAAAAGCCACCGGCACGGACACCTACATGCCCGGCGGCTTGGCGGCGCAGGCGCAGTCCGCCGCCGTGGCCAACCTCTGGACGGCGCGCGACGCCGACAAGACCAAGCTCGGCGACGTCCTCTCGAACGCGACGGCGAAGCTCGCGGCGGACAAGGAGGTGGAGAGCGGCGACGCGGCGAGGGTGGCCGGAGCGGAGACGCGCAACAAGCCCGGCGCGGCGGCGA GCCGGGCGGCGT GCCGCGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5320#0 AGCGCAGACCACACACGATCTCACTACAATAGTGCTAGCTACGACGAGAGTGTACTAGGA 60 consensus_5320#1 ------------------------------------------------------------ consensus_5320#0 CGATGAGCCAGGAGCAGCCGAGGAGGCCGTCGGAGAAGGCGGCCGGCGGCGGCGGCGGCG 120 consensus_5320#1 ------------------------------------------------------------ consensus_5320#0 AGCAGGGGATCCGGTATGGCGACGTGTTCCCGGTGACCGGAAGCCTCGCGGCCAAGCCCA 180 consensus_5320#1 ------------------------------------------------------------ consensus_5320#0 TCGCCCCGCGGGACGCGGCGACGATGCAGTCGGCGGAGAACCTCGTGCTGGGGAAGACGG 240 consensus_5320#1 ----------------------------------------------------------GG 2 ** consensus_5320#0 TCAAGGGCGGCCCCGCC-GCCGCCATGGAGTCCGCGGCGAGTCGTAACGAGGAGATGGGC 299 consensus_5320#1 TCAAGGGCGGCCCNGCCCGCCGCCATGGAGTCCGCGGCGAGTCGTAACGAGGAGATGGGC 62 ************* *** ****************************************** consensus_5320#0 GTCGTCGGGCATGACCAGGCCACGGACGCCGCCGCCGAGCAGGGCGTCAACGTCTCCGAC 359 consensus_5320#1 GTCGTCGGGCATGACCAGGCCACGGACGCCGCCGCCGAGCAGGGCGTCAACGTCTCCGAC 122 ************************************************************ consensus_5320#0 ACCCTCGTCCCCGGCGGCGGCCGCATCGTCACCGAGTTCGTCGCCGGCCAGG-------- 411 consensus_5320#1 ACCCTCGTCCCCGGCGGCGGCCGCATCGTCACCGAGTTCGTCGCCGGCCAGGTCACACAC 182 **************************************************** consensus_5320#0 ------------------------------------------------------------ consensus_5320#1 TTTGTCGTCGATCGACGTCTCTCCGCTGTGCGTGCAGCGTGAACGATCTCCCTTTTCTTT 242 consensus_5320#0 -----------------------CGGTGGGTCACTACGTGGAGCAGGACGATGGCGCCGC 448 consensus_5320#1 CTTTTTTTTTTTTTTTTTGCAGGCGGTGGGTCACTACGTGGAGCAGGACGATGGCGCCGC 302 ************************************* consensus_5320#0 CGTGGTTGCAGGAGTCGTCGGCGCCGCCCCCGGCGCGGTACGGGTGGAGGAACCTGCGAA 508 consensus_5320#1 CGTGGTTGCAGGAGTCGTCGGCGCCGCCCCCGGCGCGGTACGGGTGGAGGAACCTGCGAA 362 ************************************************************ consensus_5320#0 GATAACAATCGGCGAGGCGCTGGAGGCGGCGGCGCTGGCGGCAGGAGGGACGCCGGTGGA 568 consensus_5320#1 GATAACAATCGGCGAGGCGCTGGAGGCGGCGGCGCTGGCGGCAGGAGGGACGCCGGTGGA 422 ************************************************************ consensus_5320#0 ACGCAGCGACGCGGCGGCCATTCAGGCGGCCGAAGCAAAAGCCACCGGCACGGACACCTA 628 consensus_5320#1 ACGCAGCGACGCGGCGGCCATTCAGGCGGCCGAAGCAAAAGCCACCGGCACGGACACCTA 482 ************************************************************ consensus_5320#0 CATGCCCGGCGGCTTGGCGGCGCAGGCGCAGTCCGCCGCCGTGGCCAACCTCTGGACGGC 688 consensus_5320#1 CATGCCCGGCGGCTTGGCGGCGCAGGCGCAGTCCGCCGCCGTGGCCAACCTCTGGACGGC 542 ************************************************************ consensus_5320#0 GCGCGACGCCGACAAGACCAAGCTCGGCGACGTCCTCTCGAACGCGACGGCGAAGCTCGC 748 consensus_5320#1 GCGCGACGCCGACAAGACCAAGCTCGGCGACGTCCTCTCGAACGCGACGGCGAAGCTCGC 602 ************************************************************ consensus_5320#0 GGCGGACAAGGAGGTGGAGAGCGGCGACGCGGCGAGGGTGGCCGGAGCGGAGATGCGCAA 808 consensus_5320#1 GGCGGACAAGGAGGTGGAGAGCGGCGACGCGGCGAGGGTGGCCGGAGCGGAGACGCGCAA 662 ***************************************************** ****** consensus_5320#0 CAAGCCCGGCGCGGCGGCGAGGCCGGGCGGCGTGGCCGCGTCCATGGCCGCGGCCGCGCG 868 consensus_5320#1 CAAGCCCGGCGCGGCGGCGAGGCCGGGCGGCGTGGCCGCGT------------------- 703 ***************************************** consensus_5320#0 CCTCAACCGCGGCCCAACGACATGAGTGGATACGATCCACGCATCGATCCATGTGTATCA 928 consensus_5320#1 ------------------------------------------------------------ consensus_5320#0 AACAGCTCGTGTCGCGACGCGAGCGCGATGTAAAATTAACACGCTTCGGTGTACGTTTTA 988 consensus_5320#1 ------------------------------------------------------------ consensus_5320#0 TATGCTTCCATCCCTTCTAGTTTCCGTTGTTGCATTGCATATGGCCATATGGGTGGCTGA 1048 consensus_5320#1 ------------------------------------------------------------ consensus_5320#0 AGCTATGTTAGAATCTGTCAGAAGCCGTTTCTTTTCAGTTAGCCTGTAGCTGTTCTCTAG 1108 consensus_5320#1 ------------------------------------------------------------ consensus_5320#0 CTAGTTCTTTGGTTCGGTTGGACTGAATTGGATCGTGGGAGTACGGTCAGGAGTGGATCC 1168 consensus_5320#1 ------------------------------------------------------------ consensus_5320#0 AGATCAATCAGGTGTTTTTTTTCTGTTATGCATGTAACAAAGTCTGTAATCGAGGAGAAT 1228 consensus_5320#1 ------------------------------------------------------------ consensus_5320#0 AAATAGAAAAACCAGAAAAGCTT 1251 consensus_5320#1 ----------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||