These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5361#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 603 fasta sequence [TTTTTTTTTTTTTTTTTTGGTTATTTTTTTTTGGCTTCAAGCACGTCTGTGTTTTGTCTATTATAAAAGGTCCAACAAACAAACGGGCTTGAAAAACACTGGCCCAATCACTGTCCACGTAACAAAACATATCACGCTTTGCAACGAAAGCTCTGTTTAATAGCTAACATTCTCTGAACATACGTCGGGCTATGAAAAACATGTAATCTACTGTGTTCAAATTTTGGTTCTCTGAACCAAAACCCTTGAAAAGAAAGCAAAGCACTAGAGCCACCTAATTACTAGGGCCTAACTAGATTGACCATTATCTCCACTGGAAGATCAGCCAGAAAACATCACAAGATTGACTTTATCTGTTAGCTTCCTAGTCATCCATAGCGCAATATTAGACCCGTGGCTGCCTCACTGATAACCGTTTTGGGATGCCATGACCGACACACTGACAACCGCTGGAGAGGTATAGGCCATTTCACCCAGCGCCAATAGGATACACAATACAATGGATGCCTTGCTGACCTCCAAGGAAGACGTTGTAGCCATCTCGCCCACCTTGTCTCGCGAACAAAAACACGGCGCATATCCTTGGCCACGGGCTCCCCCCCT] [+] EMBL CA761249 [TTTTTTTTTTTTTTTTTTGGTTATTTTTTTTTGGCTTCAAGCACGTCTGTGTTTTGTCTATTATAAAAGGTCCAACAAACAAACGGGCTTGAAAAACACTGGCCCAATCACTGTCCACGTAACAAAACATATCACGCTTTGCAACGAAAGCTCTGTTTAATAGCTAACATTCTCTGAACATACGTCGGGCTATGAAAAACATGTAATCTACTGTGTTCAAATTTTGGTTCTCTGAACCAAAACCCTTGAAAAGAAAGCAAAGCACTAGAGCCACCTAATTACTAGGGCCTAACTAGATTGACCATTATCTCCACTGGAAGATCAGCCAGAAAACATCACAAGATTGACTTTATCTGTTAGCTTCCTAGTCATCCATAGCGCAATATTAGACCCGTGGCTGCCTCACTGATAACCGTTTTGGGATGCCATGACCGACACACTGACAACCGCTGGAGAGGTATAGGCCATTTCACCCAGCGCCAATAGGATACACAATACAATGGATGCCTTGCTGACCTCCAAGGAAGACGTTGTAGCCATCTCGCCCACCTTGTCTCGCGAACAAAAACACGGCGCATATCCTTGGCCACGGGCTCCCCCCCT] consensusID : consensus_5361#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 599 fasta sequence [GCGCAATATTAGACCCCCAAAAATCAAAATGAGTACTCATTTTACCCCAAAATGAGTACTAGATTGAATCATTCCTGCACTTTAAGAAATTCAACAGTAATTATACCCCAAAAAAAAAGCATTTGTGGCATATACTAGCACCATAAAAGGAGAGCATTAATTAAGGATGGAGAAGTGGATAGCAGGATGTCATCGAACAGATGTAAACTGTGGAAAAGAAGTTCTCATAACAAATACTCATTTCTCAATATCAAAACCACACTGTCCAAACAGCACAGATCAGGTAACTAAAGATGCAAACCGTGGGGTTTACCGTGGCTGCCTCACTGATAACCGTTTTGGGATGCCATGACCGACACACTAACAACCGCTGGAGAGGTATAGGCCATTTCACCCAGCGCCAATAGGATACACAATACAATGGATGCCTTGCTGACCTCCGAGGAAGACGTTGTAGCCATCTCGCCAACCTTGTCTCGCGAACAAAAACACGGCGCATATCCTTGGCCACGGGCTCCGTCGTGACCCGGCGGAACGGACGCCGACATCATCGCGGATGCTGCTGCCGCTTCGCCGCCTCCTCCCCCATCGACGACTTC] [-] EMBL CF312356 [GCGCAATATTAGACCCCCAAAAATCAAAATGAGTACTCATTTTACCCCAAAATGAGTACTAGATTGAATCATTCCTGCACTTTAAGAAATTCAACAGTAATTATACCCCAAAAAAAAAGCATTTGTGGCATATACTAGCACCATAAAAGGAGAGCATTAATTAAGGATGGAGAAGTGGATAGCAGGATGTCATCGAACAGATGTAAACTGTGGAAAAGAAGTTCTCATAACAAATACTCATTTCTCAATATCAAAACCACACTGTCCAAACAGCACAGATCAGGTAACTAAAGATGCAAACCGTGGGGTTTACCGTGGCTGCCTCACTGATAACCGTTTTGGGATGCCATGACCGACACACTAACAACCGCTGGAGAGGTATAGGCCATTTCACCCAGCGCCAATAGGATACACAATACAATGGATGCCTTGCTGACCTCCGAGGAAGACGTTGTAGCCATCTCGCCAACCTTGTCTCGCGAACAAAAACACGGCGCATATCCTTGGCCACGGGCTCCGTCGTGACCCGGCGGAACGGACGCCGACATCATCGCGGATGCTGCTGCCGCTTCGCCGCCTCCTCCCCCATCGACGACTTC] [-] EMBL AU162256 [ tttttgAAAGAAG TCTCATAAC AATNC CATTTCTCAATATNAAAACCACANTGT CAAACAGCACAGATCAGGTAACTAAAGATGNAAACCGT GGGTTTACCGTGG TGCCTCACTGATAACCGTTTTGGGATGCCATGACCGACACACTAACAACCGCTGGAGAGGTATAGGCCATTTCACCCAGCGCCAATAGGATACACAATACAATGGATGCCTTGCTGACCTCCGAGGAAGACGTTGTAGCCATCTCGCCAACCTTGTCTCGCGAACAAAAACACGGCGCATATCCTTGGCCACGGGCTCCGTCGTGACCCGGCGGAACGGACGCCGACATCATCGCGGATGCTGCTGCC CTTCGCCGCCTCCTCC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5361#0 TTTTTTTTTTTTTTTTTTGGTTATTTTTTTTTGGCTTCAAGCACGTCTGTGTTTTGTCTA 60 consensus_5361#1 -------------------------------------------------------GCGCA 5 * * consensus_5361#0 TTATAAAAGGTCCAACAAACAAACGGGCTTGAAAAACACTGGCCCAATCACTGTCCACGT 120 consensus_5361#1 ATATTAGACCCCCAAAAATCAAA--------ATGAGTACTCATTTTACCCCAAAATGAGT 57 *** * * **** ** **** * * *** * * * ** consensus_5361#0 AACAAAACATATCACGCTTTGCAACGAAAGCTCTGTTTAATAGCTAACATTCTCTGAACA 180 consensus_5361#1 ACTAGATTGAATCATTCCT-GCACTTTAAGAA--ATTCAACAGTAATTATACCCCAAAAA 114 * * * **** * * *** *** ** ** ** * ** * * ** * consensus_5361#0 TACGTCGGGCTATGAAAAACATGTAATCTACTGTGTTCAAATTTTGGTTCTCTGAACCAA 240 consensus_5361#1 AAAAGCAT-TTGTGGCATATACTAGCACCATAAAAGGAGAGCATTAATTAA--GGATGGA 171 * * * ** * * * * * * ** ** * * * consensus_5361#0 AACCCTTGAAAAGAAAGCAAAGCACTAGAGCCACCTAATTACTAGGGCCTAACTAGATTG 300 consensus_5361#1 GAAG--TGGATAGCAGG-ATGTCATCGAACAGATGTAA--ACTGTGG---AAAAGAAGTT 223 * ** * ** * * * ** * * *** *** ** ** * * consensus_5361#0 ACCATTATCTCCACTGGAAGATCAGCCAGAAAACATCACAAGATTGACTTTATCTGTTAG 360 consensus_5361#1 CTCATAACAAATACTCATTTCTCAATATCAAAACCACACTGTCCAAACAGCACAGATCAG 283 *** * *** *** ***** *** ** * * ** consensus_5361#0 CTTCCTAGTCATCCATAGCGCAATATTAGACCCGTGGCTGCCTCACTGATAACCGTTTTG 420 consensus_5361#1 GTAACTAAAGATGCAAACCGTGGGGTTTA--CCGTGGCTGCCTCACTGATAACCGTTTTG 341 * *** ** ** * ** ** ***************************** consensus_5361#0 GGATGCCATGACCGACACACTGACAACCGCTGGAGAGGTATAGGCCATTTCACCCAGCGC 480 consensus_5361#1 GGATGCCATGACCGACACACTAACAACCGCTGGAGAGGTATAGGCCATTTCACCCAGCGC 401 ********************* ************************************** consensus_5361#0 CAATAGGATACACAATACAATGGATGCCTTGCTGACCTCCAAGGAAGACGTTGTAGCCAT 540 consensus_5361#1 CAATAGGATACACAATACAATGGATGCCTTGCTGACCTCCGAGGAAGACGTTGTAGCCAT 461 **************************************** ******************* consensus_5361#0 CTCGCCCACCTTGTCTCGCGAACAAAAACACGGCGCATATCCTTGGCCACGGGCTCCCCC 600 consensus_5361#1 CTCGCCAACCTTGTCTCGCGAACAAAAACACGGCGCATATCCTTGGCCACGGGCTCCGTC 521 ****** ************************************************** * consensus_5361#0 CCT--------------------------------------------------------- 603 consensus_5361#1 GTGACCCGGCGGAACGGACGCCGACATCATCGCGGATGCTGCTGCCGCTTCGCCGCCTCC 581 consensus_5361#0 ------------------ consensus_5361#1 TCCCCCATCGACGACTTC 599 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||