cluster # 5373

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Oryza sativa
cluster # 5373 cluster # 5373 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5373#0 length = 696 sequences # 1

consensus_5373#1 length = 598 sequences # 2

consensusID : consensus_5373#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 696
fasta sequence

                              [TTTTTTTTTTTTTTTCCCAAGTTAAACTGTATTGTTGCATGTCTCAAGTACAGTAGTAGTACAACTTAACAAGCAGTTTCCTTTCGTTCTCAGCCTTGTCTTTCTTTTTGCAGTTTAGGGGGAATTCGATCCCAGGTGGCTGAGGGGGCCACACCACTATTATTTGAAACGGATGAAGTGATTGGCTATTTACAACAACTGCGGGGCAATGAGAAAAAAAGGAAACGATGAATGGCAAACCGACAAAATGAAAAATCTTCACCATCCTGGGCGACTAAAACCCCAAAGGTCAAACAGTCTCTGCAGCTTGGCACTCCTCCGTAATACGGCAATAGTATATATTAGTATTGCGCTCCTCAGTCGCTAATGTTGCATACTGACAAAAACTTCTGAACTGCATTGGGGTATTGAGTACCCTCCCAATAAAGCTGGTTGCAGTCAGTGCACTTCCAGAACTCCAAGTTTCGCTTGAAGAGGCAGGAAGGGATAATCTGGAAACCTTTTGAAGCTTCAATAGCCTCATCGAGTGTGAGCGGTTTTTGGATGAATCTTCCATTGCACTTTGTACATCTCGACATAAGCTTATCCTCGGATATCTTTAACTGGAAAGTATCAATCACCTCTGCCAGTTGATCATGTTTGAGAAGGCTCTTCACTCTGTATACCTGGTTACTTGCCAAATATTGATATTTTAAG]

[+] EMBL CA762394             [TTTTTTTTTTTTTTTCCCAAGTTAAACTGTATTGTTGCATGTCTCAAGTACAGTAGTAGTACAACTTAACAAGCAGTTTCCTTTCGTTCTCAGCCTTGTCTTTCTTTTTGCAGTTTAGGGGGAATTCGATCCCAGGTGGCTGAGGGGGCCACACCACTATTATTTGAAACGGATGAAGTGATTGGCTATTTACAACAACTGCGGGGCAATGAGAAAAAAAGGAAACGATGAATGGCAAACCGACAAAATGAAAAATCTTCACCATCCTGGGCGACTAAAACCCCAAAGGTCAAACAGTCTCTGCAGCTTGGCACTCCTCCGTAATACGGCAATAGTATATATTAGTATTGCGCTCCTCAGTCGCTAATGTTGCATACTGACAAAAACTTCTGAACTGCATTGGGGTATTGAGTACCCTCCCAATAAAGCTGGTTGCAGTCAGTGCACTTCCAGAACTCCAAGTTTCGCTTGAAGAGGCAGGAAGGGATAATCTGGAAACCTTTTGAAGCTTCAATAGCCTCATCGAGTGTGAGCGGTTTTTGGATGAATCTTCCATTGCACTTTGTACATCTCGACATAAGCTTATCCTCGGATATCTTTAACTGGAAAGTATCAATCACCTCTGCCAGTTGATCATGTTTGAGAAGGCTCTTCACTCTGTATACCTGGTTACTTGCCAAATATTGATATTTTAAG]




>consensus_5373#0
TTTTTTTTTTTTTTTCCCAAGTTAAACTGTATTGTTGCATGTCTCAAGTACAGTAGTAGT
ACAACTTAACAAGCAGTTTCCTTTCGTTCTCAGCCTTGTCTTTCTTTTTGCAGTTTAGGG
GGAATTCGATCCCAGGTGGCTGAGGGGGCCACACCACTATTATTTGAAACGGATGAAGTG
ATTGGCTATTTACAACAACTGCGGGGCAATGAGAAAAAAAGGAAACGATGAATGGCAAAC
CGACAAAATGAAAAATCTTCACCATCCTGGGCGACTAAAACCCCAAAGGTCAAACAGTCT
CTGCAGCTTGGCACTCCTCCGTAATACGGCAATAGTATATATTAGTATTGCGCTCCTCAG
TCGCTAATGTTGCATACTGACAAAAACTTCTGAACTGCATTGGGGTATTGAGTACCCTCC
CAATAAAGCTGGTTGCAGTCAGTGCACTTCCAGAACTCCAAGTTTCGCTTGAAGAGGCAG
GAAGGGATAATCTGGAAACCTTTTGAAGCTTCAATAGCCTCATCGAGTGTGAGCGGTTTT
TGGATGAATCTTCCATTGCACTTTGTACATCTCGACATAAGCTTATCCTCGGATATCTTT
AACTGGAAAGTATCAATCACCTCTGCCAGTTGATCATGTTTGAGAAGGCTCTTCACTCTG
TATACCTGGTTACTTGCCAAATATTGATATTTTAAG

consensusID : consensus_5373#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 598
fasta sequence

                              [TTTTTTTTACAACTTAACAAGCAGTTTCCTTTCGTTCTCAGCCTTGTCTTTCTTTTTGCAGTTTAGTGGGAATTCGATCCCAGGTGGCTGAGGGGGCCACACCACTATTATTTGAAACGGATGAAGTGATTGGCTATTTACAACAACTGCGGGGCAATGAGAAAAAAAGGAAACGATGAATGGCAAACCGATAAAATGAAAAATCTTCACCATCCTGGGCGACTAAAACCCCAAAGGTCAGACAGTCTCTGCAGCTTGGCACTCCTCTCCCAATAGAGCTGGTTGCAGTCAGTGCACTTCCAGAACTCCAAGTTTCGCTTGAAGAGGCAGGAAGGGATAATCTGGAAACCTTTTGAAGCTTCAATAGCCTCATCGAGTGTGAGCGGTTTTTGGATGAATCTTCCATTGCACTTTGTACATCTCGACATAAGCTTATCCTCGGATATCTTTAACTGGAAAGTATCAATCACCTCTGCCAAGTTGATCATGTTTGAGAAGGCTCTTCACTCTGTATACCTGGTTACTTGTCAAATATTGATATTTTAAGAGCTTGACATCTCTTGTAAGTAATACTCTTCTTTCCTTATAGGTTTGATTT]

[-] EMBL AU173999             [TTTTTTTTACAACTTAACAAGCAGTTTCCTTTCGTTCTCAGCCTTGTCTTTCTTTTTGCAGTTTAGTGGGAATTCGATCCCAGGTGGCTGAGGGGGCCACACCACTATTATTTGAAACGGATGAAGTGATTGGCTATTTACAACAACTGCGGGGCAATGAGAAAAAAAGGAAACGATGAATGGCAAACCGATAAAATGAAAAATCTTCACCATCCTGGGCGACTAAAACCCCAAAGGTCAGACAGTCTCTGCAGCTTGGCACTCCTCTCCCAATAGAGCTGGTTGCAGTCAGTGCACTTCCAGAACTCCAAGTTTCGCTTGAAGAGGCAGGAAGGGATAATCTGGAAACCTTTTGAAGCTTCAATAGCCTCATCGAGTGTGAGCGGTTTTTGGATGAATCTTCCATTGCACTTTGTACATCTCGACATAA                                                                                                                                                                        ]
[-] EMBL AU173998             [                                                                                                                                                                    AAAAGGAAACGATGAATGGCAAACCGATAAAATGAAAAATCTTCACCATCCTGGGCGACTAAAACCCCAAAGGTCAGACAGTCTCTGCAGCTTGGCACTCCTCTCCCAATAGAGCTGGTTGCAGTCAGTGCACTTCCAGAACTCCAAGTTTCGCTTGAAGAGGCAGGAAGGGATAATCTGGAAACCTTTTGAAGCTTCAATAGCCTCATCGAGTGTGAGCGGTTTTTGGATGAATCTTCCATTGCACTTTGTACATCTCGACATAAGCTTATCCTCGGATATCTTTAACTGGAAAGTATCAATCACCTCTGCCAAGTTGATCATGTTTGAGAAGGCTCTTCACTCTGTATACCTGGTTACTTGTCAAATATTGATATTTTAAGAGCTTGACATCTCTTGTAAGTAATACTCTTCTTTCCTTATAGGTTTGATTT]




>consensus_5373#1
TTTTTTTTACAACTTAACAAGCAGTTTCCTTTCGTTCTCAGCCTTGTCTTTCTTTTTGCA
GTTTAGTGGGAATTCGATCCCAGGTGGCTGAGGGGGCCACACCACTATTATTTGAAACGG
ATGAAGTGATTGGCTATTTACAACAACTGCGGGGCAATGAGAAAAAAAGGAAACGATGAA
TGGCAAACCGATAAAATGAAAAATCTTCACCATCCTGGGCGACTAAAACCCCAAAGGTCA
GACAGTCTCTGCAGCTTGGCACTCCTCTCCCAATAGAGCTGGTTGCAGTCAGTGCACTTC
CAGAACTCCAAGTTTCGCTTGAAGAGGCAGGAAGGGATAATCTGGAAACCTTTTGAAGCT
TCAATAGCCTCATCGAGTGTGAGCGGTTTTTGGATGAATCTTCCATTGCACTTTGTACAT
CTCGACATAAGCTTATCCTCGGATATCTTTAACTGGAAAGTATCAATCACCTCTGCCAAG
TTGATCATGTTTGAGAAGGCTCTTCACTCTGTATACCTGGTTACTTGTCAAATATTGATA
TTTTAAGAGCTTGACATCTCTTGTAAGTAATACTCTTCTTTCCTTATAGGTTTGATTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5373#0      TTTTTTTTTTTTTTTCCCAAGTTAAACTGTATTGTTGCATGTCTCAAGTACAGTAGTAGT 60
consensus_5373#1      ----------------------------------------------------TTTTTTTT 8
                                                                           *  *  *

consensus_5373#0      ACAACTTAACAAGCAGTTTCCTTTCGTTCTCAGCCTTGTCTTTCTTTTTGCAGTTTAGGG 120
consensus_5373#1      ACAACTTAACAAGCAGTTTCCTTTCGTTCTCAGCCTTGTCTTTCTTTTTGCAGTTTAGTG 68
                      ********************************************************** *

consensus_5373#0      GGAATTCGATCCCAGGTGGCTGAGGGGGCCACACCACTATTATTTGAAACGGATGAAGTG 180
consensus_5373#1      GGAATTCGATCCCAGGTGGCTGAGGGGGCCACACCACTATTATTTGAAACGGATGAAGTG 128
                      ************************************************************

consensus_5373#0      ATTGGCTATTTACAACAACTGCGGGGCAATGAGAAAAAAAGGAAACGATGAATGGCAAAC 240
consensus_5373#1      ATTGGCTATTTACAACAACTGCGGGGCAATGAGAAAAAAAGGAAACGATGAATGGCAAAC 188
                      ************************************************************

consensus_5373#0      CGACAAAATGAAAAATCTTCACCATCCTGGGCGACTAAAACCCCAAAGGTCAAACAGTCT 300
consensus_5373#1      CGATAAAATGAAAAATCTTCACCATCCTGGGCGACTAAAACCCCAAAGGTCAGACAGTCT 248
                      *** ************************************************ *******

consensus_5373#0      CTGCAGCTTGGCACTCCTCCGTAATACGGCAATAGTATATATTAGTATTGCGCTCCTCAG 360
consensus_5373#1      CTGCAGCTTGGCACTCCTC----------------------------------------- 267
                      *******************                                         

consensus_5373#0      TCGCTAATGTTGCATACTGACAAAAACTTCTGAACTGCATTGGGGTATTGAGTACCCTCC 420
consensus_5373#1      ---------------------------------------------------------TCC 270
                                                                               ***

consensus_5373#0      CAATAAAGCTGGTTGCAGTCAGTGCACTTCCAGAACTCCAAGTTTCGCTTGAAGAGGCAG 480
consensus_5373#1      CAATAGAGCTGGTTGCAGTCAGTGCACTTCCAGAACTCCAAGTTTCGCTTGAAGAGGCAG 330
                      ***** ******************************************************

consensus_5373#0      GAAGGGATAATCTGGAAACCTTTTGAAGCTTCAATAGCCTCATCGAGTGTGAGCGGTTTT 540
consensus_5373#1      GAAGGGATAATCTGGAAACCTTTTGAAGCTTCAATAGCCTCATCGAGTGTGAGCGGTTTT 390
                      ************************************************************

consensus_5373#0      TGGATGAATCTTCCATTGCACTTTGTACATCTCGACATAAGCTTATCCTCGGATATCTTT 600
consensus_5373#1      TGGATGAATCTTCCATTGCACTTTGTACATCTCGACATAAGCTTATCCTCGGATATCTTT 450
                      ************************************************************

consensus_5373#0      AACTGGAAAGTATCAATCACCTCTGCCA-GTTGATCATGTTTGAGAAGGCTCTTCACTCT 659
consensus_5373#1      AACTGGAAAGTATCAATCACCTCTGCCAAGTTGATCATGTTTGAGAAGGCTCTTCACTCT 510
                      **************************** *******************************

consensus_5373#0      GTATACCTGGTTACTTGCCAAATATTGATATTTTAAG----------------------- 696
consensus_5373#1      GTATACCTGGTTACTTGTCAAATATTGATATTTTAAGAGCTTGACATCTCTTGTAAGTAA 570
                      ***************** *******************                       

consensus_5373#0      ----------------------------
consensus_5373#1      TACTCTTCTTTCCTTATAGGTTTGATTT 598