cluster # 5419

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Oryza sativa
cluster # 5419 cluster # 5419 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5419#0 length = 497 sequences # 2

consensus_5419#1 length = 496 sequences # 1

consensusID : consensus_5419#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 497
fasta sequence

                              [CGGCGCATGCGCTATGCAGATGCGCACTCTTCGAGGAAGTCAT-CCGTCCCGCTGCTCTGC-CCGG-GCCCCCCCCCCGCCATC-GCGCTCCCTCCACCGCCTCGAGGGCACAGCATCTCCCAAGACTACAACTCCTACTGGCA-AGGCCGTGCCTCTACTCTTGAAGAGGACATCAGGTTTCTTGCTGAATTGGCTAAACGACATGCAGATGAAGCGAGATATTACAGGATCATGGCGCTGTCCG-CTGTTTCTGCGTCTGGTGCTGTGTTCTTCACTCTGTTAGCACTTCGCAATCATGTGAATCACCTGTCTGAATATTAGCTTTACCATATCCCTGTTAGCCCTTCGAATCATGTGATTCACCTGTCTGAATGTTATCCTTGATGGTTATGTATTTTGTGGTACTAAGTCTAAGCACCTTTAATCTATGAGACGGTACAAACCTATGTGGCTTTGTATTAATGTGCCATGCATTTGGATAAAAAAAAAAAAAAAAAAAA]

[+] EMBL BI800807             [CGGCGCATGCGCTATGCAGATGCGCACTCTTCGAGGAAGTCAT CCGTCCCGCTGCTCTGC CCGG GCCCCCCCCCCGCCATC GCGCTCCCTCCACCGCCTCGAGGGCACAGCATCTCCCAAGACTACAACTCCTACTGGCA AGGCCGTGCCTCTACTCTTGAAGAGGACATCAGGTTTCTTGCTGAATTGGCTAAACGACATGCAGATGAAGCGAGATATTACAGGATCATGGCGCTGTCCG CTGTTTCTGCGTCTGGTGCTGTGTTCTTCACTCTGTTAGCACTTCGCAATCATGTGAATCACCTGTCTGAATATTAGCTTTACCATATCCCTGTTAGCCCTTCGAATCATGTGATTCACCTGTCTGAATGTTATCCTTGATGGTTATGTATTTTGTGGTACTAAGTCTAAGCACCTTTAATCTATGAGACGGTACAAACCTATGTGGCTTTGTATTAATGTGCCATGCATTTGGATAAAAAAAAAA          ]
[+] EMBL BI801053             [                                       TCATCCCGTCCCGCTGCTCTGCGCCGGCACCGCCCCGCCGCCTTCTGCGCTCCCTCCACCGCCTCGAGGGCACAGCATCTCCCAAGACTAC ACTCCTACTGGCACAGGCCGTGCCTCTACTCTTGAAGAGGACATCAGGTTTCTTGCTGAATTGGCTAAACGACATGCAGATGAAGCGAGATATTACAGGATCATGGCGCTGTCCGCCTGTTTCTGCGTCTGGT CTGTGTTCTTCACTCTGTTAGCACTTCGC ATCATGTGAATCACCTGTCTGAATATTAGCTTTACCATATCCCTGTTAGCCCTTCGAATCATGTGATTCACCTGTCTGAATGTTATCCTTGATGGTTATGTATTTTGTGGTACTAAGTCTAAGCACCTTTTATCTATGAGACGGTACAAACCTATGTGGCTTTGTATTAATGTGGCATGCATTTGGATAATGTGTAACAAAAAAAAAA]




>consensus_5419#0
CGGCGCATGCGCTATGCAGATGCGCACTCTTCGAGGAAGTCATCCGTCCCGCTGCTCTGC
CCGGGCCCCCCCCCCGCCATCGCGCTCCCTCCACCGCCTCGAGGGCACAGCATCTCCCAA
GACTACAACTCCTACTGGCAAGGCCGTGCCTCTACTCTTGAAGAGGACATCAGGTTTCTT
GCTGAATTGGCTAAACGACATGCAGATGAAGCGAGATATTACAGGATCATGGCGCTGTCC
GCTGTTTCTGCGTCTGGTGCTGTGTTCTTCACTCTGTTAGCACTTCGCAATCATGTGAAT
CACCTGTCTGAATATTAGCTTTACCATATCCCTGTTAGCCCTTCGAATCATGTGATTCAC
CTGTCTGAATGTTATCCTTGATGGTTATGTATTTTGTGGTACTAAGTCTAAGCACCTTTA
ATCTATGAGACGGTACAAACCTATGTGGCTTTGTATTAATGTGCCATGCATTTGGATAAA
AAAAAAAAAAAAAAAAA

consensusID : consensus_5419#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 496
fasta sequence

                              [CCGTTCCCGTCTGCTCTGCGCCGGGCGCCCCGCCTCCGCCATCGCGCTCCCTCCACCGCCTCGAGGACACAACATCTCCCAAGACTACAACTCCTACTGCAAGGCCGTGCCTCTACTCTTGAAGAGGACAACATCAGGTTTCTTGCTGAATTGGCTAAACGACATGCGGATGAAGCAAGATATTACAGGATCGTGGCGCTGTCTGCTGTTTCTGCCTCTGGTGTTGTGTTCTTCACCCTGTTAGCCCTTCGCAATCATTTGAATCACCTGTCTGAATGTTAGCTTTACCATATCCGCGTTAGCCCTTCGAATCATGTGATTCACCTGTCTGAATGTTAGCTTTACCATATCCTTGATGGTTATGTATTTTGTGGTACCAAGTCTAAGCACCTTTTATCTATGAGACGATGCAACCTGTGGCTTTGTATTGATATGGCATGCATTTGGATAATGTGTAACGTACTGCACTCTTATGTATTTCAACCTTATATAAAAA]

[+] EMBL BI803184             [CCGTTCCCGTCTGCTCTGCGCCGGGCGCCCCGCCTCCGCCATCGCGCTCCCTCCACCGCCTCGAGGACACAACATCTCCCAAGACTACAACTCCTACTGCAAGGCCGTGCCTCTACTCTTGAAGAGGACAACATCAGGTTTCTTGCTGAATTGGCTAAACGACATGCGGATGAAGCAAGATATTACAGGATCGTGGCGCTGTCTGCTGTTTCTGCCTCTGGTGTTGTGTTCTTCACCCTGTTAGCCCTTCGCAATCATTTGAATCACCTGTCTGAATGTTAGCTTTACCATATCCGCGTTAGCCCTTCGAATCATGTGATTCACCTGTCTGAATGTTAGCTTTACCATATCCTTGATGGTTATGTATTTTGTGGTACCAAGTCTAAGCACCTTTTATCTATGAGACGATGCAACCTGTGGCTTTGTATTGATATGGCATGCATTTGGATAATGTGTAACGTACTGCACTCTTATGTATTTCAACCTTATATAAAAA]




>consensus_5419#1
CCGTTCCCGTCTGCTCTGCGCCGGGCGCCCCGCCTCCGCCATCGCGCTCCCTCCACCGCC
TCGAGGACACAACATCTCCCAAGACTACAACTCCTACTGCAAGGCCGTGCCTCTACTCTT
GAAGAGGACAACATCAGGTTTCTTGCTGAATTGGCTAAACGACATGCGGATGAAGCAAGA
TATTACAGGATCGTGGCGCTGTCTGCTGTTTCTGCCTCTGGTGTTGTGTTCTTCACCCTG
TTAGCCCTTCGCAATCATTTGAATCACCTGTCTGAATGTTAGCTTTACCATATCCGCGTT
AGCCCTTCGAATCATGTGATTCACCTGTCTGAATGTTAGCTTTACCATATCCTTGATGGT
TATGTATTTTGTGGTACCAAGTCTAAGCACCTTTTATCTATGAGACGATGCAACCTGTGG
CTTTGTATTGATATGGCATGCATTTGGATAATGTGTAACGTACTGCACTCTTATGTATTT
CAACCTTATATAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5419#0      CGGCGCATGCGCTATGCAGATGCGCACTCTTCGAGGAAGTCATCCGTCCCG-CTGCTCTG 59
consensus_5419#1      ------------------------------------------CCGTTCCCGTCTGCTCTG 18
                                                                 *  ***** ********

consensus_5419#0      C-CCGGGCCCCCC--CCCCGCCATCGCGCTCCCTCCACCGCCTCGAGGGCACAGCATCTC 116
consensus_5419#1      CGCCGGGCGCCCCGCCTCCGCCATCGCGCTCCCTCCACCGCCTCGAGGACACAACATCTC 78
                      * ****** ****  * ******************************* **** ******

consensus_5419#0      CCAAGACTACAACTCCTACTGGCAAGGCCGTGCCTCTACTCTTGAAGAGGACA---TCAG 173
consensus_5419#1      CCAAGACTACAACTCCTACTG-CAAGGCCGTGCCTCTACTCTTGAAGAGGACAACATCAG 137
                      ********************* *******************************   ****

consensus_5419#0      GTTTCTTGCTGAATTGGCTAAACGACATGCAGATGAAGCGAGATATTACAGGATCATGGC 233
consensus_5419#1      GTTTCTTGCTGAATTGGCTAAACGACATGCGGATGAAGCAAGATATTACAGGATCGTGGC 197
                      ****************************** ******** *************** ****

consensus_5419#0      GCTGTCCGCTGTTTCTGCGTCTGGTGCTGTGTTCTTCACTCTGTTAGCACTTCGCAATCA 293
consensus_5419#1      GCTGTCTGCTGTTTCTGCCTCTGGTGTTGTGTTCTTCACCCTGTTAGCCCTTCGCAATCA 257
                      ****** *********** ******* ************ ******** ***********

consensus_5419#0      TGTGAATCACCTGTCTGAATATTAGCTTTACCATATCCCTGTTAGCCCTTCGAATCATGT 353
consensus_5419#1      TTTGAATCACCTGTCTGAATGTTAGCTTTACCATATCCGCGTTAGCCCTTCGAATCATGT 317
                      * ****************** *****************  ********************

consensus_5419#0      GATTCACCTGTCTGAATGTTA-----------TCCTTGATGGTTATGTATTTTGTGGTAC 402
consensus_5419#1      GATTCACCTGTCTGAATGTTAGCTTTACCATATCCTTGATGGTTATGTATTTTGTGGTAC 377
                      *********************           ****************************

consensus_5419#0      TAAGTCTAAGCACCTTTAATCTATGAGACGGTACAAACCTATGTGGCTTTGTATTAATGT 462
consensus_5419#1      CAAGTCTAAGCACCTTTTATCTATGAGACGATGCAACC---TGTGGCTTTGTATTGATAT 434
                       **************** ************ * *** *   ************** ** *

consensus_5419#0      GCCATGCATTTGGATAAAAAAAAAAAAAAAAAAAA------------------------- 497
consensus_5419#1      GGCATGCATTTGGATAATGTGTAACGTACTGCACTCTTATGTATTTCAACCTTATATAAA 494
                      * ***************     **   *    *                           

consensus_5419#0      --
consensus_5419#1      AA 496