These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5422#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 798 fasta sequence [TATCACTTGCTGCAAAAGGAGTTGTGTCAAAAGTATTCCCAAAGCCTCGGAGAGCTTGGTTACCAACTGGATGCTTGAAAATACTAGATACTTTACATCAAGCTTTGCCAAGCATGTCCCTTATAGCTTCAGATTTCAGCTATCTTCCTGATGTCAGTATACCTGGCGATAGAGCTCCATTGGTTTCTTCAAAGAAGGACGGGAGGACTTTGGATCATCGCAACTATCTTGAGGCTCAGGGTGACGCAGATATTTTCTTCCCAACCGATTTCTGGCTTTTGGAGAAGATCGACCATGACTGCTCTGGTTTCTCAAAACAGCAAAAGAACCCCGGTGCATTTAAACCAGTTAAGACGAGGAGAACCATCATTCTTGATTCTGCTGCCTTCATGGAAGAGTTTGGACTGCCGTTGAAGACTAGGACCAAAGATGGATATAATCCACTCCTTGATGATTTCAGGAACACCAAGTTCTATCTAAGCGTTCCTACCCATAACAAGAAATAGTCATCATATATTATTTCTTGTTATATTTTAGTCTATTCGTTGGTCAGATCATACTATCCCATGCGGAT-AAAATCGACTTTCGCATTCTTTTAGAGAACAGGAAAGTCTTTTAGTCGACCGAAGAATCGCAAGTTTGATTTGTCCATTTCTGTACTTCACAAGCTGCATGGCTGAAAAGTGGATTATAGTGTACTACACAGGATGTCAGGCCTGCTTCTTTGTGACACGGCTTAATAATTTGAGAACTTCATTTTATAAATAATTTTGAGTCTTTTCTATTGTTAAAAAAAAA] [+] EMBL CB000995 [TATCACTTGCTGCAAAAGGAGTTGTGTCAAAAGTATTCCCAAAGCCTCGGAGAGCTTGGTTACCAACTGGATGCTTGAAAATACTAGATACTTTACATCAAGCTTTGCCAAGCATGTCCCTTATAGCTTCAGATTTCAGCTATCTTCCTGATGTCAGTATACCTGGCGATAGAGCTCCATTGGTTTCTTCAAAGAAGGACGGGAGGACTTTGGATCATCGCAACTATCTTGAGGCTCAGGGTGACGCAGATATTTTCTTCCCAACCGATTTCTGGCTTTTGGAGAAGATCGACCATGACTGCTCTGGTTTCTCAAAACAGCAAAAGAACCCCGGTGCATTTAAACCAGTTAAGACGAGGAGAACCATCATTCTTGATTCTGCTGCCTTCATGGAAGAGTTTGGACTGCCGTTGAAGACTAGGACCAAAGATGGATATAATCCACTCCTTGATGATTTCAGGAACACCAAGTTCTATCTAAGCGTTCCTACCCATAACAAGAAATAGTCATCATATATTATTTCTTGTTATATTTTAGTCTATTCGTTGGTCAGATCATACTATCCCATGCGGAT AAAATCGAC ] [-] EMBL CF312225 [ AGTTCTATCTAAGCGTTCCTACCCATAACAAGAAATAGTCATCATATATTATTTCTTGTTATATTTTAGTCTATTCGTTGGTCAGATCATACTATCCCATGCGGATAAAAATCGACTTTCGCATTCTTTTAGAGAACAGGAAAGTCTTTTAGTCGACCGAAGAATCGCAAGTTTGATTTGTCCATTTCTGTACTTCACAAGCTGCATGGCTGAAAAGTGGATTATAGTGTACTACACAGGATGTCAGGCCTGCTTCTTTGTGACACGGCTTAATAATTTGAGAACTTCATTTTATAAATAATTTTGAGTCTTTTCTATTGTTAAAAAAAAA] consensusID : consensus_5422#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 360 fasta sequence [TGACTGGACTGAAGGAGTAGAAAGAACACCAAGTTCTATCTAAGCGTTCCTACCCATAACAAGAAATAGTCATCATATATTATTTCTTGTTATATTTTAGTCTATTCGTTGGTCAGATCATACTATCCCATGCGGATAAAAATCGACTTTCGCATTCTTTTAGAGAACAGGAAAGTCTTTTAGTCGACCGAAGAATCGCAAGTTTGATTTGTCCATTTCTGTACTTCACAAGCTGCATGGCTGAAAAGTGGATTATAGTGTACTACACAGGATGTCAGGCCTGCTTCTTTGTGACACGGCTTATAATTTGAGAACTTCATTTTATAAATAATTTTGAGTCTTTTCTATTGTTAAAAAAAA] [+] EMBL CF312224 [TGACTGGACTGAAGGAGTAGAAAGAACACCAAGTTCTATCTAAGCGTTCCTACCCATAACAAGAAATAGTCATCATATATTATTTCTTGTTATATTTTAGTCTATTCGTTGGTCAGATCATACTATCCCATGCGGATAAAAATCGACTTTCGCATTCTTTTAGAGAACAGGAAAGTCTTTTAGTCGACCGAAGAATCGCAAGTTTGATTTGTCCATTTCTGTACTTCACAAGCTGCATGGCTGAAAAGTGGATTATAGTGTACTACACAGGATGTCAGGCCTGCTTCTTTGTGACACGGCTTATAATTTGAGAACTTCATTTTATAAATAATTTTGAGTCTTTTCTATTGTTAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5422#0 TATCACTTGCTGCAAAAGGAGTTGTGTCAAAAGTATTCCCAAAGCCTCGGAGAGCTTGGT 60 consensus_5422#1 ------------------------------------------------------------ consensus_5422#0 TACCAACTGGATGCTTGAAAATACTAGATACTTTACATCAAGCTTTGCCAAGCATGTCCC 120 consensus_5422#1 ------------------------------------------------------------ consensus_5422#0 TTATAGCTTCAGATTTCAGCTATCTTCCTGATGTCAGTATACCTGGCGATAGAGCTCCAT 180 consensus_5422#1 ------------------------------------------------------------ consensus_5422#0 TGGTTTCTTCAAAGAAGGACGGGAGGACTTTGGATCATCGCAACTATCTTGAGGCTCAGG 240 consensus_5422#1 ------------------------------------------------------------ consensus_5422#0 GTGACGCAGATATTTTCTTCCCAACCGATTTCTGGCTTTTGGAGAAGATCGACCATGACT 300 consensus_5422#1 ------------------------------------------------------------ consensus_5422#0 GCTCTGGTTTCTCAAAACAGCAAAAGAACCCCGGTGCATTTAAACCAGTTAAGACGAGGA 360 consensus_5422#1 ------------------------------------------------------------ consensus_5422#0 GAACCATCATTCTTGATTCTGCTGCCTTCATGGAAGAGTTTGGACTGCCGTTGAAGACTA 420 consensus_5422#1 ------------------------------------------------------------ consensus_5422#0 GGACCAAAGATGGATATAATCCACTCCTTGATGATTTCAGGAACACCAAGTTCTATCTAA 480 consensus_5422#1 ----------------TGA-CTGGACTGAAGGAGTAGAAAGAACACCAAGTTCTATCTAA 43 * * * * * * ******************** consensus_5422#0 GCGTTCCTACCCATAACAAGAAATAGTCATCATATATTATTTCTTGTTATATTTTAGTCT 540 consensus_5422#1 GCGTTCCTACCCATAACAAGAAATAGTCATCATATATTATTTCTTGTTATATTTTAGTCT 103 ************************************************************ consensus_5422#0 ATTCGTTGGTCAGATCATACTATCCCATGCGGATAAAA-TCGACTTTCGCATTCTTTTAG 599 consensus_5422#1 ATTCGTTGGTCAGATCATACTATCCCATGCGGATAAAAATCGACTTTCGCATTCTTTTAG 163 ************************************** ********************* consensus_5422#0 AGAACAGGAAAGTCTTTTAGTCGACCGAAGAATCGCAAGTTTGATTTGTCCATTTCTGTA 659 consensus_5422#1 AGAACAGGAAAGTCTTTTAGTCGACCGAAGAATCGCAAGTTTGATTTGTCCATTTCTGTA 223 ************************************************************ consensus_5422#0 CTTCACAAGCTGCATGGCTGAAAAGTGGATTATAGTGTACTACACAGGATGTCAGGCCTG 719 consensus_5422#1 CTTCACAAGCTGCATGGCTGAAAAGTGGATTATAGTGTACTACACAGGATGTCAGGCCTG 283 ************************************************************ consensus_5422#0 CTTCTTTGTGACACGGCTTAATAATTTGAGAACTTCATTTTATAAATAATTTTGAGTCTT 779 consensus_5422#1 CTTCTTTGTGACACGGCTTA-TAATTTGAGAACTTCATTTTATAAATAATTTTGAGTCTT 342 ******************** *************************************** consensus_5422#0 TTCTATTGTTAAAAAAAAA 798 consensus_5422#1 TTCTATTGTTAAAAAAAA- 360 ****************** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||