These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5452#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 342 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCCAACCTCCGGGGGGAAATCCTTTTAATTAAACATAAAAATTGGTTTAAACAACACCCTGCCAAATTTAAAAAACAGCGGGTTGTTGCACAAAAGGGGGTCCCCGGTTATTTTTTTTGGGGGGTTCGTTCCCCCCTTCAAATTGTTTTAATCCCCCCAAACAACCAAAAACTTTGGGCAACATTTTTTCCAGAAAAATCGGGGCCTTTTTTTACTCCTTCACCCCATGTCAGGGCCCAGGGGCAAATTCTTTAAAACCTGCGGGACTATCCCTTTTAGGGGGGGTTAAT] [+] EMBL CF310306 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCCAACCTCCGGGGGGAAATCCTTTTAATTAAACATAAAAATTGGTTTAAACAACACCCTGCCAAATTTAAAAAACAGCGGGTTGTTGCACAAAAGGGGGTCCCCGGTTATTTTTTTTGGGGGGTTCGTTCCCCCCTTCAAATTGTTTTAATCCCCCCAAACAACCAAAAACTTTGGGCAACATTTTTTCCAGAAAAATCGGGGCCTTTTTTTACTCCTTCACCCCATGTCAGGGCCCAGGGGCAAATTCTTTAAAACCTGCGGGACTATCCCTTTTAGGGGGGGTTAAT] [+] EMBL CF307956 [ TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCCAAACTACGGGGGGAAATCCTTTTATTTAAACATAAAAATTGGTTTAAACAACACCCTGCCAAATTTAAAAAACAGAGGGTTGTTGCAAAAAACGGGGTCCCCGGTTATTTTTTTTGGGGGGTTCGTTCCCCCCTTCAAATTGTTTTAATCCCCCCAAACAACCAAAAACTTTGGGAAACATTTTTTCCAAAAAAATCGGGGCCT ] consensusID : consensus_5452#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 296 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCCCAAACTACAGGGGCAAATCCTTTTAATTAAACATAAAAACTTGTTTAAACAACAACCTGCCACATTTAAAAAACAGAAGGTTGTTGCACAAAACGGGGTCCCCGGTTCTTTTTTTTGGGGGGTTCGTTCCCCCCTTCAAATTGTTTTAATACCCCCAAACAACCAAAAACTTTCGGCAACATTTTTTCCAAAAAAATCGGGGCCTTTTTCTTTTTTTTCCCAAGCAAGCTTTTTTTGAAAAAGGGATTTTTTTT] [+] EMBL CF298577 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCCCAAACTACAGGGGCAAATCCTTTTAATTAAACATAAAAACTTGTTTAAACAACAACCTGCCACATTTAAAAAACAGAAGGTTGTTGCACAAAACGGGGTCCCCGGTTCTTTTTTTTGGGGGGTTCGTTCCCCCCTTCAAATTGTTTTAATACCCCCAAACAACCAAAAACTTTCGGCAACATTTTTTCCAAAAAAATCGGGGCCTTTTTCTTTTTTTTCCCAAGCAAGCTTTTTTTGAAAAAGGGATTTTTTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5452#0 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCCAACCT 60 consensus_5452#1 ------------TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCCCAAACT 48 *************************************** ***** ** consensus_5452#0 CCGGGGGGAAATCCTTTTAATTAAACATAAAAATTGGTTTAAACAACACCCTGCCAAATT 120 consensus_5452#1 ACAGGGGCAAATCCTTTTAATTAAACATAAAAACTTGTTTAAACAACAACCTGCCACATT 108 * **** ************************* * ************ ******* *** consensus_5452#0 TAAAAAACAGCGGGTTGTTGCACAAAAGGGGGTCCCCGGTTATTTTTTTTGGGGGGTTCG 180 consensus_5452#1 TAAAAAACAGAAGGTTGTTGCACAAAACGGGGTCCCCGGTTCTTTTTTTTGGGGGGTTCG 168 ********** *************** ************* ****************** consensus_5452#0 TTCCCCCCTTCAAATTGTTTTAATCCCCCCAAACAACCAAAAACTTTGGGCAACATTTTT 240 consensus_5452#1 TTCCCCCCTTCAAATTGTTTTAATACCCCCAAACAACCAAAAACTTTCGGCAACATTTTT 228 ************************ ********************** ************ consensus_5452#0 TCCAGAAAAATCGGGGCCTTTTTTTACTCCTTCACCC-CATGTCAGGGCCCAGGGGCAAA 299 consensus_5452#1 TCCAAAAAAATCGGGGCCTTTTTCTTTTTTTTCCCAAGCAAGCTTTTTTTGAAAAAGGGA 288 **** ****************** * * *** * ** * * * consensus_5452#0 TTCTTTAAAACCTGCGGGACTATCCCTTTTAGGGGGGGTTAAT 342 consensus_5452#1 TTTTTTTT----------------------------------- 296 ** *** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||