|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5493#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1206 fasta sequence
[ACACACACGGGCCACACACACCGCGGAGGAATCCAATCCAGCGGCTGAGATCGCGCCACGTATGTTCCCCCGCTTGCTCCTCGCCCACCGCCTCCTCGCCGGCGCCGCCGCTCCTCTCCCCCGCCGCCGGACGGCCGCCGCCATGTCCGCCGCGGCGCCGGGGACGCGGCTGCTGCGCGGCGTGGTGTTCGACATGGACGGGACCCTGACGGTGCCCGTCATCGACTTCCCGGCCATGTACCGCGAGGTGCTCGGCGGGGACGAGGCCTACGCGGCGGCGCGCGCGGCGGGCGGGGGCTCCGTCGACATACTCCACTGCATCGAGGGCTGGGCGCCCGACGAGCAGCGCCGCGCCTACGAGGTCATCGCGCGGTTCGAGCAGGATGGCCTCGACCGCCTCCAGATCATGCCCGGTGCCTCTGAGCTCTGCGGGTTCCTGGACGCAAAGCAGATCAGAAGAGGTTTAATCACCCGCAATGTGAAGACCGCAGTTGATTTGTTTCACCAAAGGTTTGGTATGATGTTTTCTCCAGCCTTAAGTAGAGAATTCCGCCCCTATAAGCCAGATCCAGCTCCCCTGCTTCATATTTGCTCCACTTGGAATATTCCACCAAATGAGGTGGTCATGGTTGGTGATAGCCTCAAGGATGATGTCGTCTGTGGTAAGAGAGCAGGAGCTTTTACTTGCTTGCTTGACGAAACAGGACGATACGGTCCCCATGATTCTTTGCCTGAAGGTGTTCGACCTGACTTCAAGGTTTCTTCGCTTTCCGAAGTATTCTCTGTGCTGGAAGAGCATTTTGATTTGGCACCGGTGGTTTCAGAGAGTAGAATCTGACAGGAAAGTATTAGTTATCTGTGATCTAACATGGAACCCAGCTCCTGTGTCTTAATACTATGAACCTCCATCAGTGGTGTTTCAAGTACCAGAAACCCTTACGGCCTATGAAGATTATGCTCTCCACCAAAGTGGATTGCAGTTTGATTTTGCCACTTGCCCTCAAAATGATTCATCGTTCATTGTCAGCCGGTTTGATGTATATCACTATGTCCTGTCCACTATACCTGTTAGTATTCTGTGGCACGGACAGTGCGTTCTGTTATAGACAAAAATCAACCCTCGCGATGACTGGCAGAATTTGCCGTAGTATTTGGGTGATTCAGAATCTTTTATCTGTGGCCATCTTTCATATTCATTCATTTGTT]
[+] EMBL AK058331 [ACACACACGGGCCACACACACCGCGGAGGAATCCAATCCAGCGGCTGAGATCGCGCCACGTATGTTCCCCCGCTTGCTCCTCGCCCACCGCCTCCTCGCCGGCGCCGCCGCTCCTCTCCCCCGCCGCCGGACGGCCGCCGCCATGTCCGCCGCGGCGCCGGGGACGCGGCTGCTGCGCGGCGTGGTGTTCGACATGGACGGGACCCTGACGGTGCCCGTCATCGACTTCCCGGCCATGTACCGCGAGGTGCTCGGCGGGGACGAGGCCTACGCGGCGGCGCGCGCGGCGGGCGGGGGCTCCGTCGACATACTCCACTGCATCGAGGGCTGGGCGCCCGACGAGCAGCGCCGCGCCTACGAGGTCATCGCGCGGTTCGAGCAGGATGGCCTCGACCGCCTCCAGATCATGCCCGGTGCCTCTGAGCTCTGCGGGTTCCTGGACGCAAAGCAGATCAGAAGAGGTTTAATCACCCGCAATGTGAAGACCGCAGTTGATTTGTTTCACCAAAGGTTTGGTATGATGTTTTCTCCAGCCTTAAGTAGAGAATTCCGCCCCTATAAGCCAGATCCAGCTCCCCTGCTTCATATTTGCTCCACTTGGAATATTCCACCAAATGAGGTGGTCATGGTTGGTGATAGCCTCAAGGATGATGTCGTCTGTGGTAAGAGAGCAGGAGCTTTTACTTGCTTGCTTGACGAAACAGGACGATACGGTCCCCATGATTCTTTGCCTGAAGGTGTTCGACCTGACTTCAAGGTTTCTTCGCTTTCCGAAGTATTCTCTGTGCTGGAAGAGCATTTTGATTTGGCACCGGTGGTTTCAGAGAGTAGAATCTGACAGGAAAGTATTAGTTATCTGTGATCTAACATGGAACCCAGCTCCTGTGTCTTAATACTATGAACCTCCATCAGTGGTGTTTCAAGTACCAGAAACCCTTACGGCCTATGAAGATTATGCTCTCCACCAAAGTGGATTGCAGTTTGATTTTGCCACTTGCCCTCAAAATGATTCATCGTTCATTGTCAGCCGGTTTGATGTATATCACTATGTCCTGTCCACTATACCTGTTAGTATTCTGTGGCACGGACAGTGCGTTCTGTTATAGACAAAAATCAACCCTCGCGATGACTGGCAGAATTTGCCGTAGTATTTGGGTGATTCAGAATCTTTTATCTGTGGCCATC ]
[+] EMBL AK060021 [ GCTGAGATCGCGCCACGTATGTTCCCCCGCTTGCTCCTCGCCCACCGCCTCCTCGCCGGCGCCGCCGCTCCTCTCCCCCGCCGCCGGACGGCCGCCGCCATGTCCGCCGCGGCGCCGGGGACGCGGCTGCTGCGCGGCGTGGTGTTCGACATGGACGGGACCCTGACGGTGCCCGTCATCGACTTCCCGGCCATGTACCGCGAGGTGCTCGGCGGGGACGAGGCCTACGCGGCGGCGCGCGCGGCGGGCGGGGGCTCCGTCGACATACTCCACTGCATCGAGGGCTGGGCGCCCGACGAGCAGCGCCGCGCCTACGAGGTCATCGCGCGGTTCGAGCAGGATGGCCTCGACCGCCTCCAGATCATGCCCGGTGCCTCTGAGCTCTGCGGGTTCCTGGACGCAAAGCAGATCAGAAGAGGTTTAATCACCCGCAATGTGAAGACCGCAGTTGATTTGTTTCACCAAAGGTTTGGTATGATGTTTTCTCCAGCCTTAAGTAGAGAATTCCGCCCCTATAAGCCAGATCCAGCTCCCCTGCTTCATATTTGCTCCACTTGGAATATTCCACCAAATGAGGTGGTCATGGTTGGTGATAGCCTCAAGGATGATGTCGTCTGTGGTAAGAGAGCAGGAGCTTTTACTTGCTTGCTTGACGAAACAGGACGATACGGTCCCCATGATTCTTTGCCTGAAGGTGTTCGACCTGACTTCAAGGTTTCTTCGCTTTCCGAAGTATTCTCTGTGCTGGAAGAGCATTTTGATTTGGCACCGGTGGTTTCAGAGAGTAGAATCTGACAGGAAAGTATTAGTTATCTGTGATCTAACATGGAACCCAGCTCCTGTGTCTTAATACTATGAACCTCCATCAGTGGTGTTTCAAGTACCAGAAACCCTTACGGCCTATGAAGATTATGCTCTCCACCAAAGTGGATTGCAGTTTGATTTTGCCACTTGCCCTCAAAATGATTCATCGTTCATTGTCAGCCGGTTTGATGTATATCACTATGTCCTGTCCACTATACCTGTTAGTATTCTGTGGCACGGACAGTGCGTTCTGTTATAGACAAAAATCAACCCTCGCGATGACTGGCAGAATTTGCCGTAGTATTTGGGTGATTCAGAATCTTTTATCTGTGGCCATCTTTCATATTCATTCATTTGTT]
consensusID : consensus_5493#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 823 fasta sequence
[TCCACTGNGAATATTCCACCAAATGAGGTGGTCATGGTTGGTGATAGCCTCAAGGATGATGTAAGAATTCTTTATAAATTGTTTCTAAATAGTTTGCTTTGTCCCATGGTTTTAATTTCAGTCTGCAGTTGAGCTAAATTGTTCTAGTGTTGTTTTTTTATATGCCCCTTAACTGTAATACTTGCATAAGCTAAGTTACTAGGGTATTGGACAATGCCCTTTTAGCTCACAATTCACAGTTTTCTGAACTCAGAAAGATGCTTCAGTAGCTTATGGACGCTAATATGTTGTTTCTGAAATAGTTTTCACTGAAAACATGTGCAGATCGTCTGTGGTAAGAGAGCAGGAGCTTTTACTTGCTTGCTTGACGAAACAGGACGATACGGTCCCCATGATTCTTTGCCTGAAGATGTTCGACCTGACTTCAAGGTTTCTTCGCTTTCCGAAGTATTCTCTGTGCTGGAAGAGCATTTTGATTTGGCACCGGTGGTTTCAGAGAGTAGAATCTGACAGGAAAGTATTAGTTATCTGTGATCTAACATGGAACCCAGCTCCTGTGTCTTAATACTATGAACCTCCATCAGTGGTGTTTCAAGTACCAGAAACCCTTACGGCCTATGAAGATTATGCTCTCCACCAAAGTGGATTGCAGTTTGATTTTGCCACTTGCCCTCAAAATGATTCATCGTTCATTGTCAGCCGGTTTGATGTATATCACTATGTCCACTATACCTGTTAGTATTCTGTGGCACGGACAGTGCGTTCTGTTATAGACAAAAATCAACCCTCGCGATGACTGGCAGAATTTGCCGTAAGGGTGGGT]
[-] EMBL CB617775 [TCCACTGNGAATATTCCACCAAATGAGGTGGTCATGGTTGGTGATAGCCTCAAGGATGATGTAAGAATTCTTTATAAATTGTTTCTAAATAGTTTGCTTTGTCCCATGGTTTTAATTTCAGTCTGCAGTTGAGCTAAATTGTTCTAGTGTTGTTTTTTTATATGCCCCTTAACTGTAATACTTGCATAAGCTAAGTTACTAGGGTATTGGACAATGCCCTTTTAGCTCACAATTCACAGTTTTCTGAACTCAGAAAGATGCTTCAGTAGCTTATGGACGCTAATATGTTGTTTCTGAAATAGTTTTCACTGAAAACATGTGCAGATCGTCTGTGGTAAGAGAGCAGGAGCTTTTACTTGCTTGCTTGACGAAACAGGACGATACGGTCCCCATGATTCTTTGCCTGAAGATGTTCGACCTGACTTCAAGGTTTCTTCGCTTTCCGAAGTATTCTCTGTGCTGGAAGAGCATTTTGATTTGGCACCGGTGGTTTCAGAGAGTAGAATCTGACAGGAAAGTATTAGTTATCTGTGATCTAACATGGAACCCAGCTCCTGTGTCTTAATACTATGAACCTCCATCAGTGGTGTTTCAAGTACCAGAAACCCTTACGGCCTATGAAGATTATGCTCTCCACCAAAGTGGATTGCAGTTTGATTTTGCCACTTGCCCTCAAAATGATTCATCGTTCATTGTCAGCCGGTTTGATGTATATCACTATGTCCACTATACCTGTTAGTATTCTGTGGCACGGACAGTGCGTTCTGTTATAGACAAAAATCAACCCTCGCGATGACTGGCAGAATTTGCCGTAAGGGTGGGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5493#0 ACACACACGGGCCACACACACCGCGGAGGAATCCAATCCAGCGGCTGAGATCGCGCCACG 60
consensus_5493#1 ------------------------------------------------------------
consensus_5493#0 TATGTTCCCCCGCTTGCTCCTCGCCCACCGCCTCCTCGCCGGCGCCGCCGCTCCTCTCCC 120
consensus_5493#1 ------------------------------------------------------------
consensus_5493#0 CCGCCGCCGGACGGCCGCCGCCATGTCCGCCGCGGCGCCGGGGACGCGGCTGCTGCGCGG 180
consensus_5493#1 ------------------------------------------------------------
consensus_5493#0 CGTGGTGTTCGACATGGACGGGACCCTGACGGTGCCCGTCATCGACTTCCCGGCCATGTA 240
consensus_5493#1 ------------------------------------------------------------
consensus_5493#0 CCGCGAGGTGCTCGGCGGGGACGAGGCCTACGCGGCGGCGCGCGCGGCGGGCGGGGGCTC 300
consensus_5493#1 ----------------------------------------------------------TC 2
**
consensus_5493#0 CGTCGACA-TACTCCACTGCATCGAGGGCTGGGCGCCCGACGAGCAGCGCCGCGCCTACG 359
consensus_5493#1 CACTGNGAATATTCCACCAAAT---GAGGTGGTC-----ATGGTTGGTGATA-GCCTCAA 53
* * * ** ***** ** * * *** * * * * * ****
consensus_5493#0 AGGTCATCGCGCGGTTCGAGCAGGATGGCCTCGACCGCCTCCAGATCATGCCCGGTGCCT 419
consensus_5493#1 GGATGATGTAAGAATTCTTTATAAATTGTTTCTAAATAGTTTG--CTTTGTCCCATGGTT 111
* * ** *** ** * ** * * ** ** ** *
consensus_5493#0 CTGAGCTCTGCGGGTTCCTGGACGCAAAGCAGATCAGAAGAGGTTTAATCACCCGCAATG 479
consensus_5493#1 TTAATTTCAGTCTGCAGTTGA--GCTAAATTGTTCTAGTGTTGTTTTTTTATATGCCCCT 169
* * ** * * ** ** ** * ** * **** * * **
consensus_5493#0 TGAAGACCGCAGTTG-ATTTGTTTCACCA--AAGGTTTGGTATGATGTTTTCTCCAGCCT 536
consensus_5493#1 TAACTGTAATACTTGCATAAGCTAAGTTACTAGGGTATTGGACAATGCCCTTTTAGCTCA 229
* * * *** ** * * * * *** * * * *** * * *
consensus_5493#0 TAAGT-AGAGAATTCCGCCCCTATAAGCCAGATCCAGCTCCCCTGCTTCATATTTGCTCC 595
consensus_5493#1 CAATTCACAGTTTTCTGAACTCAGAA---AGAT---GCTTCAGTAGCTTATGGACGCT-- 281
** * * ** *** * * * ** **** *** * * * ** ***
consensus_5493#0 ACTTGGAATATTCCACCAAATGAGGTGGTCATGGTTGGTGATAGCCTCAAGGATGATGTC 655
consensus_5493#1 ------AATATGTTGTTTC-TGAAATAGTTTTCACTGAAAACATGTGCAGA-------TC 327
***** *** * ** * ** * * ** **
consensus_5493#0 GTCTGTGGTAAGAGAGCAGGAGCTTTTACTTGCTTGCTTGACGAAACAGGACGATACGGT 715
consensus_5493#1 GTCTGTGGTAAGAGAGCAGGAGCTTTTACTTGCTTGCTTGACGAAACAGGACGATACGGT 387
************************************************************
consensus_5493#0 CCCCATGATTCTTTGCCTGAAGGTGTTCGACCTGACTTCAAGGTTTCTTCGCTTTCCGAA 775
consensus_5493#1 CCCCATGATTCTTTGCCTGAAGATGTTCGACCTGACTTCAAGGTTTCTTCGCTTTCCGAA 447
********************** *************************************
consensus_5493#0 GTATTCTCTGTGCTGGAAGAGCATTTTGATTTGGCACCGGTGGTTTCAGAGAGTAGAATC 835
consensus_5493#1 GTATTCTCTGTGCTGGAAGAGCATTTTGATTTGGCACCGGTGGTTTCAGAGAGTAGAATC 507
************************************************************
consensus_5493#0 TGACAGGAAAGTATTAGTTATCTGTGATCTAACATGGAACCCAGCTCCTGTGTCTTAATA 895
consensus_5493#1 TGACAGGAAAGTATTAGTTATCTGTGATCTAACATGGAACCCAGCTCCTGTGTCTTAATA 567
************************************************************
consensus_5493#0 CTATGAACCTCCATCAGTGGTGTTTCAAGTACCAGAAACCCTTACGGCCTATGAAGATTA 955
consensus_5493#1 CTATGAACCTCCATCAGTGGTGTTTCAAGTACCAGAAACCCTTACGGCCTATGAAGATTA 627
************************************************************
consensus_5493#0 TGCTCTCCACCAAAGTGGATTGCAGTTTGATTTTGCCACTTGCCCTCAAAATGATTCATC 1015
consensus_5493#1 TGCTCTCCACCAAAGTGGATTGCAGTTTGATTTTGCCACTTGCCCTCAAAATGATTCATC 687
************************************************************
consensus_5493#0 GTTCATTGTCAGCCGGTTTGATGTATATCACTATGTCCTGTCCACTATACCTGTTAGTAT 1075
consensus_5493#1 GTTCATTGTCAGCCGGTTTGATGTATATCACTATG-----TCCACTATACCTGTTAGTAT 742
*********************************** ********************
consensus_5493#0 TCTGTGGCACGGACAGTGCGTTCTGTTATAGACAAAAATCAACCCTCGCGATGACTGGCA 1135
consensus_5493#1 TCTGTGGCACGGACAGTGCGTTCTGTTATAGACAAAAATCAACCCTCGCGATGACTGGCA 802
************************************************************
consensus_5493#0 GAATTTGCCGTAGTATTTGGGTGATTCAGAATCTTTTATCTGTGGCCATCTTTCATATTC 1195
consensus_5493#1 GAATTTGCCGTAA-GGGTGGGT-------------------------------------- 823
************ *****
consensus_5493#0 ATTCATTTGTT 1206
consensus_5493#1 -----------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||