These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5500#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1010 fasta sequence [TGTCAGCCAGAGCTGCAGATCAAACTGGGGCACGGGCGCTCCCCACGCGCGCAGAACAGAGCACCACGAAGCTCCAAACACATTCCTCCATCATCTCATCTTTTGACCGGTCACCGGCCGGCCGGGGACCTACGCGGCGGCCACCACCACCACCACCGGCAGCGCCATGACAGCCTGAACTTGTGTTTAAGTAAGCCCCAAAGCGTAGCAAAGTATTGCAGGACCAACGAAAAGTCTATATAGGTTTCAAATGGAGTGCGGTGTTACACTTCCAATCCTCTATGGCCACGTAGCCTTGCGGCCAGGGTTACCGATTTCGAGGTAAAAACCGGTTCCTGTTGGCCGCAAGGCTACACAAAACCGGACCCTACTGGTTTCAAGAACAAAAAAAGGAATGGACTCCCGCACTATCTCTAGTTCTTTACACATGTCATGGAGGAATAACTCAGTGAAACAACGCACTGTCTGGTGCTGTTTGTTAAAAAAAAAAAGAAAGAAAAAACTTAGAGTGACTGACCAAGAAATCCATGATCTGGTCTACGTTCTTGGTTCGTCTACCGATTCATCAAGAAGAGATTCCACACCGGCCTAGCTACGGTGTCCCGTGATGTCGGCTGTCGGCAAGATCAACATGTATGTTTCGTTCAGCTCCTCCAGTGAAATGGCCCCGGACAGCTATATAGCCTGAATCCCAATCAGAGATGCAGTCATGGATGATAACCATGCGTCGTATGCTTCAGTAATTCAGTTTAGTAGGCTCATGTGCCTCTGAATCTCTGATTGGGAAGTTGCAGTAGGCAGACATTCCAGTTTGGATGCCATGATCAGTTAGTTATCAATGCCGATCCTGTGCTGATGCAGTTGTTGGGTTGGGTCTGATTAGTGTGACGAGCAGGAAGAGACATTTGCCAGTTTTTCTGGATCTGCTACATCATTCAGAGGCTTTGCTAATTGATGCTGTATTTCTGTCTCCAAAAAAAAAAAAAAGTAAGTGAAATCTTTGAGAAAAA] [+] EMBL AK109317 [TGTCAGCCAGAGCTGCAGATCAAACTGGGGCACGGGCGCTCCCCACGCGCGCAGAACAGAGCACCACGAAGCTCCAAACACATTCCTCCATCATCTCATCTTTTGACCGGTCACCGGCCGGCCGGGGACCTACGCGGCGGCCACCACCACCACCACCGGCAGCGCCATGACAGCCTGAACTTGTGTTTAAGTAAGCCCCAAAGCGTAGCAAAGTATTGCAGGACCAACGAAAAGTCTATATAGGTTTCAAATGGAGTGCGGTGTTACACTTCCAATCCTCTATGGCCACGTAGCCTTGCGGCCAGGGTTACCGATTTCGAGGTAAAAACCGGTTCCTGTTGGCCGCAAGGCTACACAAAACCGGACCCTACTGGTTTCAAGAACAAAAAAAGGAATGGACTCCCGCACTATCTCTAGTTCTTTACACATGTCATGGAGGAATAACTCAGTGAAACAACGCACTGTCTGGTGCTGTTTGTTAAAAAAAAAAAGAAAGAAAAAACTTAGAGTGACTGACCAAGAAATCCATGATCTGGTCTACGTTCTTGGTTCGTCTACCGATTCATCAAGAAGAGATTCCACACCGGCCTAGCTACGGTGTCCCGTGATGTCGGCTGTCGGCAAGATCAACATGTATGTTTCGTTCAGCTCCTCCAGTGAAATGGCCCCGGACAGCTATATAGCCTGAATCCCAATCAGAGATGCAGTCATGGATGATAACCATGCGTCGTATGCTTCAGTAATTCAGTTTAGTAGGCTCATGTGCCTCTGAATCTCTGATTGGGAAGTTGCAGTAGGCAGACATTCCAGTTTGGATGCCATGATCAGTTAGTTATCAATGCCGATCCTGTGCTGATGCAGTTGTTGGGTTGGGTCTGATTAGTGTGACGAGCAGGAAGAGACATTTGCCAGTTTTTCTGGATCTGCTACATCATTCAGAGGCTTTGCTAATTGATGCTGTATTTCTGTCTCCAAAAAAAAAAAAAAGTAAGTGA ] [+] EMBL AU066076 [ ACCCTACTGGTTNCAAGACCAAAAAAAGGAATGGACTCCNGCACTATCTCTAGTTCTTTACACATGTCATGGAGGAATAACTCAGTGAAACAACGCACTGTCTGGTGCTGTTTGTTAAAAAAAAAAAGAAAGAAAAAACTTAGAGTGACTGACCAAGAAATCCATGATCTGGTCTACGTTCTTGGTTCGTCTACCGATTCATCAAGAAGAGATTCCACACCGGCCTAGCTACGGTGTCCCGTGATGTCGGCTGTCGGCAAGATCAACATGTATGTTTCGTTCAGCTCCTCCAGTGAAATGGCCCCGGACAGCTATATAGCCTGAATCCCAATCAGAGATGCAGTCATGGATGATAACCATGCGTCGTATGCTTCAGTAATTCAGTTTAGTAGGCTCATGTGCCTCTGAATCTCTGATTGGGAAGTTGCAGTAGGCAGACATTCCAGTTTGGATGCCATGATCAGTTAGTTATCAATGCCGATCCTGTGCTGATGCAGTTGTTGGGTTGGGTCTGATTAGTGTGACGAGCAGGAAGAGACATTTGCCAGTTTTTCTGGATCTGCTACATCATTCAGAGGCTTTGCTAATTGATGCTGTATTTCTGTCTCCAAAAAAAAAAAAAAGTAAGTGAAATCTTTGAGAAAAA] consensusID : consensus_5500#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 693 fasta sequence [CGAGCGGCCACCACCACCACCACCGGCAGCGCCATGACAGCCTGAACTTGTGTTTAAGTAAGCCCCAAAGCGTAGCAAAGTATTGCAGGACCAACGAAAAGGTGAGGCTGTGCTTTGATTTGATCTTCTTTTTTGTGTGCATGACCACCTACTATACCTCTCTTTGATTCTGCAACTCTGAATCTGAAACGCATTGTGTTCTGACATTGCAGGTTTCTTTTTTTTTTTTTCTCTTTGGCCTCTGGGGCTCTTTCATGATTCCAAAAGTGCAATGTTGCATCACTGGAGTGAACTGATTGTTTGCTTTGCTGAATTGTATTATTGGAAGAGTTAAAATCTTCCTTAGTTACTACCAACATCCCACCAAAGAAAGAGCTATCTAGTCTGTTCTACACGTTAAGTACCCACTATTACGTCACTTCGAAACCACATGGGACTAAACTACACTATTACTGCAGTCTATATAGGTTTCAAATGGAGTGCGGTGTTACACTTCCAATCCTCTATGGCCACGTAGCCTTGCGGCCAGGGTTACCGATTTCGAGGTAAAAACCGGTTNCTGTTGGCCGCAAGGCTTCACAAAACCGGACCCCTACTGGTTTCAAGAACCAAAAAANGGAATGGACTCCGNACTATCTCTAGTTCTTTACCACATGTCATGGGAGGAATAACTTAATGGAACAACCGCACTGN] [+] EMBL AU090581 [CGAGCGGCCACCACCACCACCACCGGCAGCGCCATGACAGCCTGAACTTGTGTTTAAGTAAGCCCCAAAGCGTAGCAAAGTATTGCAGGACCAACGAAAAGGTGAGGCTGTGCTTTGATTTGATCTTCTTTTTTGTGTGCATGACCACCTACTATACCTCTCTTTGATTCTGCAACTCTGAATCTGAAACGCATTGTGTTCTGACATTGCAGGTTTCTTTTTTTTTTTTTCTCTTTGGCCTCTGGGGCTCTTTCATGATTCCAAAAGTGCAATGTTGCATCACTGGAGTGAACTGATTGTTTGCTTTGCTGAATTGTATTATTGGAAGAGTTAAAATCTTCCTTAGTTACTACCAACATCCCACCAAAGAAAGAGCTATCTAGTCTGTTCTACACGTTAAGTACCCACTATTACGTCACTTCGAAACCACATGGGACTAAACTACACTATTACTGCAGTCTATATAGGTTTCAAATGGAGTGCGGTGTTACACTTCCAATCCTCTATGGCCACGTAGCCTTGCGGCCAGGGTTACCGATTTCGAGGTAAAAACCGGTTNCTGTTGGCCGCAAGGCTTCACAAAACCGGACCCCTACTGGTTTCAAGAACCAAAAAANGGAATGGACTCCGNACTATCTCTAGTTCTTTACCACATGTCATGGGAGGAATAACTTAATGGAACAACCGCACTGN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5500#0 TGTCAGCCAGAGCTGCAGATCAAACTGGGGCACGGGCGCTCCCCACGCGCGCAGAACAGA 60 consensus_5500#1 ------------------------------------------------------------ consensus_5500#0 GCACCACGAAGCTCCAAACACATTCCTCCATCATCTCATCTTTTGACCGGTCACCGGCCG 120 consensus_5500#1 ------------------------------------------------------------ consensus_5500#0 GCCGGGGACCTACGCGGCGGCCACCACCACCACCACCGGCAGCGCCATGACAGCCTGAAC 180 consensus_5500#1 ------------CG-AGCGGCCACCACCACCACCACCGGCAGCGCCATGACAGCCTGAAC 47 ** ******************************************** consensus_5500#0 TTGTGTTTAAGTAAGCCCCAAAGCGTAGCAAAGTATTGCAGGACCAACGAAAAGTCTATA 240 consensus_5500#1 TTGTGTTTAAGTAAGCCCCAAAGCGTAGCAAAGTATTGCAGGACCAACGAAAAGGTGAGG 107 ****************************************************** * consensus_5500#0 TAG-GTTTCAAATGGAG-TGCGGTGTTACACTTCCAATCCTCTATGGCCACGTAGCCTTG 298 consensus_5500#1 CTGTGCTTTGATTTGATCTTCTTTTTTGTGTGCATGACCACCTACTAT-ACCTCTCTTTG 166 * * ** * * ** * * * ** * * *** ** * * *** consensus_5500#0 CGGCCAGGGTTACCGATTTCGAGGTAAAAACCGGTTCCTGTTGGCCGCAAGGCTACACAA 358 consensus_5500#1 ATTCTGCAACT-CTGAATCTGAAACGCA--TTGTGTTCTGACA-TTGCAGGTTTCTTTTT 222 * * * ** * ** * * * *** *** * * consensus_5500#0 AACCGGACCCTACTGGTTTCAAGAACAAAAAAAGGAATGGACTCCCGCACTATCTCTAGT 418 consensus_5500#1 TTTTTTTTCTCTTTGGCCTCTGG----------------GGCTCTTTCATGATTCCAAAA 266 * *** ** * * *** ** ** * * consensus_5500#0 TCTTTACACATGTCATGGAGGAATAACTCAGTGAAACAACGCACTGTCTGGTGCTGTTTG 478 consensus_5500#1 GTGCAATGT-TGCATCACTGGAGTGAACTGATTGTTTGCTTTGCTGAATTGTATTATTGG 325 * ** *** * * * *** * ** * ** * consensus_5500#0 TTAAAAAAAAAAAGAAAGAAAAAACTTAGAGTGACTGACCAAGAAATCCATGATCTGGTC 538 consensus_5500#1 AAGAGTTAAAATCTTCCTTAGTTACTACCAACATCCCACCAAAGAAAGAGCTATCTAGTC 385 * **** * *** * * ***** ** **** *** consensus_5500#0 TACGTTCTTGGTT---CGTCTACCGATTCATCAAGAAGAGATTCCACACCGGCCTAG-CT 594 consensus_5500#1 TGTTCTACACGTTAAGTACCCACTATTACGTCACTTCGAAA--CCACATGGGACTAAACT 443 * * *** * ** * * *** ** * ***** ** *** ** consensus_5500#0 ACGGTGTCCCGTGATGTCGGCTGTCGGCAAGATCAACATGTATGTTTCGTTCAGCTCCTC 654 consensus_5500#1 ACACTAT----TACTGCAGTCTAT--ATAGGTTTCAAATGGA-GTGCGGTGTTACACTTC 496 ** * * * ** * ** * * * * * *** * ** ** * * ** consensus_5500#0 CAGTGAAATGGCCCCGGACAGCTATATAGCCTGAATCCCAATCAGAGATGCAGTCATGGA 714 consensus_5500#1 CAAT--------CCTCTATGGCCACGTAGCCT----TGCGGCCAGGGTTACCGATTTCGA 544 ** * ** * ** * ****** * *** * * * * * ** consensus_5500#0 --TGATAACCATGCGTCGTATGCTTCAGTAATTCAGTTTAGTAGGCTCATGTGCCTCTGA 772 consensus_5500#1 GGTAAAAACCGGTTNCTGTTGGCCGCAAGGCTTCACAAAACCGGACCCCTA-----CTGG 599 * * **** ** ** ** **** * * * * * *** consensus_5500#0 ATCTCTGATTGGGAAGTTGCAGTAGGCAGACATTCCAGTTTGGATGCCATGATCAGTTAG 832 consensus_5500#1 TTTCAAGAACCAAAAAANGGAATGG------ACTCCGNACTATCTCTAGTTCTTTACCAC 653 * ** ** * * * * * *** * * * * * consensus_5500#0 TTATCAATGCCGATCCTGTGCTGATGCAGTTGTTGGGTTGGGTCTGATTAGTGTGACGAG 892 consensus_5500#1 ATGTCA-TGGGAGGAATAACTTAATGGAACAACCGCACTGN------------------- 693 * *** ** * * *** * * ** consensus_5500#0 CAGGAAGAGACATTTGCCAGTTTTTCTGGATCTGCTACATCATTCAGAGGCTTTGCTAAT 952 consensus_5500#1 ------------------------------------------------------------ consensus_5500#0 TGATGCTGTATTTCTGTCTCCAAAAAAAAAAAAAAGTAAGTGAAATCTTTGAGAAAAA 1010 consensus_5500#1 ---------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||