These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5526#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1803 fasta sequence [TTTGTTGAGGAGTGCCTTTTAAATGATTATTCTTTTATGCTACTTTGTACTTAGGTGAATGATACAGTGGGGACATTAGCTCTAGGGCATTACTATGATGAAGACACAGTGGCTGCTGTGATAATTGGGTCTGGCACCAACGCTTGCTACATTGAACGCACTGATGCAATTATCAAGTGCCAGGGTCTTCTAACGAACTCTGGAGGCATGGTATCTTATTTTCTCCTTTATCTGTAGTCAGTTCAATTTCCTTGTCAAATGCTCATCAGCTTATGTGGAGTAAAGGAATTATGATGCCCATGTGCGTACCCTAAAACATTTCGTTAATCAGGTAGTAAACATGGAGTGGGGGAATTTCTGGTCATCACATTTGCCAAGGACGCCATATGACATCTTGCTGGATGATGAAACACACAATCGCAATGATCAGGTAGCAACCTGGGTAAAATTCAATTATTCTGGTATCTTGTGTTGTGGTTTAGACTGAACACTTTGTACTACCATGATTCAGGGCTTTGAGAAAATGATATCAGGAATGTATCTTGGGGAAATTGCAAGATTGGTATTTCATAGAATGGCCCAGGAATCAGATGTTTTTGGTGATGCTGCTGATAGTCTATCCAACCCTTTCATTTTGAGGTATGTCCGGATGTCAAATTCTACTGATGTTTGTTTCGTACCTGGTGTATTTCTGCATAAACACAATTAGTAAAAAGAAGTTGTTCTATGTGTTGTCTGATTTCAATTTTGCAAATCCAGCACACCGTTTCTGGCCGCAATTCGCGAGGACGATTCACCAGATCTGAGCGAAGTCAGAAGGATACTTCGAGAACATCTGAAGGTTAGCTCAGAATTATTCCAGCCATTTCATCGGGCACCATTCTTTTTTCCATTCCATCCATCTAGTTGTCTGATGATTCTCTCTTCCAGATTCCCGATGCTCCTCTGAAAACTCGACGGCTGGTCGTGAAAGTCTGCGACATTGTGACTCGCAGAGCCGCCCGTCTAGCCGCTGCAGGCATCGTGGGGATACTGAAGAAGCTGGGGAGGGATGGGAGCGGCGCGGCGTCGAGCGGGAGAGGTAGAGGGCAGCCGAGGAGGACGGTGGTGGCGATCGAGGGCGGGCTGTACCAGGGTTACCCGGTGTTCAGGGAGTACCTGGACGAGGCCCTGGTGGAGATCCTGGGGGAGGAGGTGGCGCGGAACGTGACGCTGAGGGTGACGGAGGATGGGTCGGGGGTCGGGGCTGCCCTCCTCGCCGCCGTACATCCGTCGAATAGACAGCAACAAGGAGGTCCCATATAGTGAGAGAGACAATGAAGATACAGCTAGCCCCTCTTGTTCAAATGTAAAAAAGGGACATTGTTTGATATCTATATTCATATATATAAAAATCTGGGTCTTGTGCAGAGAAATCCCGTTTTTTCTTGGCCTGCCATTCATGCTATGATAGTCTTACAGTATTTGCCATCTCTTGATTTCTGAATTCTCACAGGCGAGGTGAATAAGGCGAAGTGAATGGAATGAGAGTATGAGACGAGTTACGTTCAGTAGCTTGGTTTTCTACTACAAGTGGGGAGCATGTAGTATATGTTTTCGCATGCGCTTTTCCATTGGCAACGCACTGGATTCATGTAGCCTTGTTCTTTATTATGGCATATGGCATGCAACGTAGCTAGCTTGCATGACAGCATGAGTGCAAAACGACGTGCAATGGAGTGTAATACTAATAAAACTTATATAAAAAAAAGTGCACTCCACCTTTCAGGGATTAAAAATAAAAAATAAAAATAAAACGGAGCC] [+] EMBL AK064590 [TTTGTTGAGGAGTGCCTTTTAAATGATTATTCTTTTATGCTACTTTGTACTTAGGTGAATGATACAGTGGGGACATTAGCTCTAGGGCATTACTATGATGAAGACACAGTGGCTGCTGTGATAATTGGGTCTGGCACCAACGCTTGCTACATTGAACGCACTGATGCAATTATCAAGTGCCAGGGTCTTCTAACGAACTCTGGAGGCATGGTATCTTATTTTCTCCTTTATCTGTAGTCAGTTCAATTTCCTTGTCAAATGCTCATCAGCTTATGTGGAGTAAAGGAATTATGATGCCCATGTGCGTACCCTAAAACATTTCGTTAATCAGGTAGTAAACATGGAGTGGGGGAATTTCTGGTCATCACATTTGCCAAGGACGCCATATGACATCTTGCTGGATGATGAAACACACAATCGCAATGATCAGGTAGCAACCTGGGTAAAATTCAATTATTCTGGTATCTTGTGTTGTGGTTTAGACTGAACACTTTGTACTACCATGATTCAGGGCTTTGAGAAAATGATATCAGGAATGTATCTTGGGGAAATTGCAAGATTGGTATTTCATAGAATGGCCCAGGAATCAGATGTTTTTGGTGATGCTGCTGATAGTCTATCCAACCCTTTCATTTTGAGGTATGTCCGGATGTCAAATTCTACTGATGTTTGTTTCGTACCTGGTGTATTTCTGCATAAACACAATTAGTAAAAAGAAGTTGTTCTATGTGTTGTCTGATTTCAATTTTGCAAATCCAGCACACCGTTTCTGGCCGCAATTCGCGAGGACGATTCACCAGATCTGAGCGAAGTCAGAAGGATACTTCGAGAACATCTGAAGGTTAGCTCAGAATTATTCCAGCCATTTCATCGGGCACCATTCTTTTTTCCATTCCATCCATCTAGTTGTCTGATGATTCTCTCTTCCAGATTCCCGATGCTCCTCTGAAAACTCGACGGCTGGTCGTGAAAGTCTGCGACATTGTGACTCGCAGAGCCGCCCGTCTAGCCGCTGCAGGCATCGTGGGGATACTGAAGAAGCTGGGGAGGGATGGGAGCGGCGCGGCGTCGAGCGGGAGAGGTAGAGGGCAGCCGAGGAGGACGGTGGTGGCGATCGAGGGCGGGCTGTACCAGGGTTACCCGGTGTTCAGGGAGTACCTGGACGAGGCCCTGGTGGAGATCCTGGGGGAGGAGGTGGCGCGGAACGTGACGCTGAGGGTGACGGAGGATGGGTCGGGGGTCGGGGCTGCCCTCCTCGCCGCCGTACATCCGTCGAATAGACAGCAACAAGGAGGTCCCATATAGTGAGAGAGACAATGAAGATACAGCTAGCCCCTCTTGTTCAAATGTAAAAAAGGGACATTGTTTGATATCTATATTCATATATATAAAAATCTGGGTCTTGTGCAGAGAAATCCCGTTTTTTCTTGGCCTGCCATTCATGCTATGATAGTCTTACAGTATTTGCCATCTCTTGATTTCTGAATTCTCACAGGCGAGGTGAATAAGGCGAAGTGAATGGAATGAGAGTATGAGACGAGTTACGTTCAGTAGCTTGGTTTTCTACTACAAGTGGGGAGCATGTAGTATATGTTTTCGCATGCGCTTTTCCATTGGCAACGCACTGGATTCATGTAGCCTTGTTCTTTATTATGGCATATGGCATGCAACGTAGCTAGCTTGCATGACAGCATGAGTGCAAAACGACGTGCAATGGAGTGTAATACTAATAAAACTTATATAAAAAAAAGTGCACTCCACCTTTCAGGGATTAAAAATAAAAAATAAAAATAAAACGGAGCC] consensusID : consensus_5526#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1256 fasta sequence [TTCNGACGANGTTGGTGCGGNATCTGTGATCGTCAACCAAAAGGTTGAACAGCACCCATCCCTGAGGAACTGACCAAAGGCACTACTGAGGGTTTATTCAACTTTGTTGCCTGGCACTAAAGAATTTTCTTGAAGGAGAAGATGACCAAGATGGAAAAATGGCACTTGGTTTTACNTTTTCTTTCCCTGTTANACAAATTTCAGTGTCTTCAGGGTCATTAATTAGGTGGACAAAAGGATTTTCCATCAGANACACGGTTGGCAGAAATGTTGCTCANTGCTTAAATGAAGCGCTTGCCAATTGTGGGCTAAATGTGCGGGTCACTGCATTGGTGAATGATACAGTGGGGACATTAGCTCTAGGGCATTACTATGATGAAAACACAGTGGCTGCTGTGATAATTGGGTCTGGCACCAACGCTTGCTACATTGAACGCACTGATGCAATTATCAAGTGCCANGGTCTTCTAACGAACTCTGGAAGCATGGTAATAAACATGGA-TGGGGGAA-TTCTGGTCNTCCACATTTGCCAAGGAC-CCATATGAC-TC-TGCTGGATGATG-AAC-CACAATCCCCATGATCNGGGC-TTGAAAAAAT-AAATCAGGAATGT-TC-TGGGGGAATTGC-ANA-TGGT-TTTTNTANAATGGCCCAGGAATCAGATGTTTTTGGTGATGCTGCTGATAGTCTATCCAACCCTTTCATTTTGAGCACACCGTTTCTGGCCGCAATTCGCGAGGACGATTCACCAGATCTGAGCGAAGTCAGAGGGATACTTCGAGAACATCTGAAGATTCCCGATGCTCCTCTGAAAACTCGACGGCTGGTCGTGAAAGTCTGCGACATTGTGACTCGCAGAGCCGCCCGTCTAGCCGCTGCAGGCATCGTGGGGATACTGAAGAAGCTGGGGAGGGATGGGAGCGGCGCGGCGTCGAGCGGGAGAGGTAGAGGGCAGCCGAGGAGGACGGTGGTGGCGATCGAGGGCGGGCTGTACCAGGGTTACCCGGTGTTCAGGGAGTACCTGGACGAGGCCCTGGTGGAGATCCTGGGGGAGGAGGTGGCGCGGAACGTGACGCTGAGGGTGACGGAGGATGGGTCGGGGGTCGGGGCTGCCCTCCTCGCCGCCGTACATTCGTCGAATAGACAGCAACAAGGGGGTCCCATATAGTGAGAGAGACAATGAAGATACAGCTAGCCCCTCTTGTTCAAATGTAAAAAAGGGACATTGTTTGATATCTATATTCATATATATAAAAATCTGGGTC] [+] EMBL AA751584 [TTCNGACGANGTTGGTGCGGNATCTGTGATCGTCAACCAAAAGGTTGAACAGCACCCATCCCTGAGGAACTGACCAAAGGCACTACTGAGGGTTTATTCAACTTTGTTGCCTGGCACTAAAGAATTTTCTTGAAGGAGAAGATGACCAAGATGGAAAAATGGCACTTGGTTTTACNTTTTCTTTCCCTGTTANACAAATTTCAGTGTCTTCAGGGTCATTAATTAGGTGGACAAAAGGATTTTCCATCAGANACACGGTTGGCAGAAATGTTGCTCANTGCTTAAATGAAGCGCTTGCCAATTGTGGGCTAAATGTGCGGGTCACTGCATTGGTGAATGATACAGTGGGGACATTAGCTCTAGGGCATTACTATGATGAAAACACAGTGGCTGCTGTGATAATTGGGTCTGGCACCAACGCTTGCTACATTGAACGCACTGATGCAATTATCAAGTGCCANGGTCTTCTAACGAACTCTGGAAGCATGGTAATAAACATGGA TGGGGGAA TTCTGGTCNTCCACATTTGCCAAGGAC CCATATGAC TC TGCTGGATGATG AAC CACAATCCCCATGATCNGGGC TTGAAAAAAT AAATCAGGAATGT TC TGGGGGAATTGC ANA TGGT TTTTNTANAATGG ] [+] EMBL AK107602 [ gcCCTGGCACTAAAGAATTTTCTTGAAGGAGAAGATGACCAAGATGGAAAAATGGCACTTGG TTTACATTTTCTTTCCCTGTTAGACAAATTTCAGTGTCTTCAGGGTCATTAATTAGGTGGACAAAAGGATTTTCCATCAGAGACACGGTTGGCAGAGATGTTGCTCAGTGCTTAAATGAAGCGCTTGCCAATTGTGGGCTAAATGTGCGGGTCACTGCATTGGTGAATGATACAGTGGGGACATTAGCTCTAGGGCATTACTATGATGAAGACACAGTGGCTGCTGTGATAATTGGGTCTGGCACCAACGCTTGCTACATTGAACGCACTGATGCAATTATCAAGTGCCAGGGTCTTCTAACGAACTCTGGAGGCATGGTAGTAAACATGGAGTGGGGGAATTTCTGGTCAT CACATTTGCCAAGGACGCCATATGACATCTTGCTGGATGATGAAACACACAATCGCAATGATCAGGGCTTTGAGAAAATGATATCAGGAATGTATCTTGGGGAAATTGCAAGATTGGTATTTCATAGAATGGCCCAGGAATCAGATGTTTTTGGTGATGCTGCTGATAGTCTATCCAACCCTTTCATTTTGAGCACACCGTTTCTGGCCGCAATTCGCGAGGACGATTCACCAGATCTGAGCGAAGTCAGAGGGATACTTCGAGAACATCTGAAGATTCCCGATGCTCCTCTGAAAACTCGACGGCTGGTCGTGAAAGTCTGCGACATTGTGACTCGCAGAGCCGCCCGTCTAGCCGCTGCAGGCATCGTGGGGATACTGAAGAAGCTGGGGAGGGATGGGAGCGGCGCGGCGTCGAGCGGGAGAGGTAGAGGGCAGCCGAGGAGGACGGTGGTGGCGATCGAGGGCGGGCTGTACCAGGGTTACCCGGTGTTCAGGGAGTACCTGGACGAGGCCCTGGTGGAGATCCTGGGGGAGGAGGTGGCGCGGAACGTGACGCTGAGGGTGACGGAGGATGGGTCGGGGGTCGGGGCTGCCCTCCTCGCCGCCGTACATTCGTCGAATAGACAGCAACAAGGGGGTCCCATATAGTGAGAGAGACAATGAAGATACAGCTAGCCCCTCTTGTTCAAATGTAAAAAAGGGACATTGTTTGATATCTATATTCATATATATAAAAATCTGGGTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5526#0 TTTGTTGAGGAGTGCCTTTTAAATGATTATTCTTTTATGCTACTTTGTACTTAGGTGAAT 60 consensus_5526#1 -----------------TTCNGACGAN-GTTGGTGCGGNATCTGTGATCGTCAACCAAAA 42 ** * ** ** * * * * * * ** consensus_5526#0 GATACAGTGGGGACATTAGCTCTAGGGCATTACTATGATGAAGACACAGTGGCTGCTGTG 120 consensus_5526#1 GGTTGAACAGCACC--CATCCCTGAGGAACTGACCAAAGGCACTACTGAGGGTTTATTCA 100 * * * * * * * ** ** * * * * * ** * * consensus_5526#0 ATAATTGGGTCTGGCACCAACGCTTGCTACATTGAACGCACTGATG-CAATTATCAAGTG 179 consensus_5526#1 ACTTTGTTGCCTGGCACTAAAGAAT--TTTCTTGAAGGAGAAGATGACCAAGATGGAAAA 158 * * * ******* ** * * * ***** * **** * * ** * consensus_5526#0 CCAGGGTCTTCTAACGAACTCTGGAGGCATGGTATCTTATTTTCTCCTTTATCTGTAGTC 239 consensus_5526#1 ATGGCACTTGGTTTTACNTTTTCTTTCCCTGTTANACAAATTTCAGTGTCTTCAG-GGTC 217 * * * * * * ** ** * **** * ** * *** consensus_5526#0 AGTTCAATTTCCTTGTCAAATG--CTCATCAGCTTATGTGGAGTAAAGGAATTATGATGC 297 consensus_5526#1 A--TTAATTAGGTGGACAAAAGGATTTTCCATCAGANACACGGTTGGCAGAA-ATGTTGC 274 * * **** * * **** * * ** * * ** * *** *** consensus_5526#0 CCATGTGCGTACCCTAAAACATTTCGTTAATCAGGTAGTAAACATG-GAGTGGGGGAATT 356 consensus_5526#1 TCAN-TGCTTAAA-TGAAGCGCTT-GCCAATTGTGGGCTAAATGTGCGGGTCACTGCATT 331 ** *** ** * ** * ** * *** * **** ** * ** * *** consensus_5526#0 TCTGGTCATCACATTTGCCAAGGACGCCATATGACATCTTGCTGGATGATGAAACACACA 416 consensus_5526#1 GGTGAATGATACAGTGGGGACATTAGCTCTAGGGCAT--TACT--ATGATGAAA-ACACA 386 ** *** * * * ** ** * *** * ** ********* ***** consensus_5526#0 ATCGCAATGATCAGGTAGCAACCTGGGTAAAATTCAATTATTCTGGTATCTTGTGTTGTG 476 consensus_5526#1 GTGGC--TGCT---GTGATAATTGGGTCTGGCACCAACGCTTGCTACATTGAACGCACTG 441 * ** ** * ** ** ** *** ** ** * ** consensus_5526#0 GTTTAGACTGAACACTTTGTACTACCATGATTCA--GGGCTTTGAGAAAATGATATCAGG 534 consensus_5526#1 ATGCA-----ATTATCAAGTGCCANGGTCTTCTAACGAACTCTGGAAGCATGGTAATAAA 496 * * * * ** * * * * * * ** ** * *** ** * consensus_5526#0 AATGTATCTTGGGGAAATTGCAAGATTGGTATTTCATAGAATGGCCCAGGAATCAGATGT 594 consensus_5526#1 CATGGAT---GGGGGAATT------CTGGTCNTCCACA--TTTGCCAAGGACCCATATGA 545 *** ** **** **** **** * ** * * *** **** ** *** consensus_5526#0 TTTTGGTG-ATGCTGC-TGATAGTCTATCCAACCCTTTCATTTTGAGGTATGTCCGGATG 652 consensus_5526#1 CTCTGCTGGATGATGAACCACAATCCCCATGATCNGGGCTTGAAAAAATAAATCAGGA-- 603 * ** ** *** ** * * ** * * * * * ** ** *** consensus_5526#0 TCAAATTCTACTGATGTTTGTTTCGTACCTGGTGTATTTCTGCATAAACACAATTAGTAA 712 consensus_5526#1 --ATGTTCTGGGGGAATTGCANATGGTTTTTNTANAATGGCCCAGGAATCAGATGTTTTT 661 * **** * ** * * * * * ** ** ** * consensus_5526#0 AAAGAAGTTGTTCTATGTGTTGTCTGATTTCAATTTTGCAAATCCAGCACACCGTTTCTG 772 consensus_5526#1 GGTGATGCTGCTG-----ATAGTCT-ATCCAACCCTTTCATTTTGAGCACACCGTTTCTG 715 ** * ** * * **** ** * ** ** * *************** consensus_5526#0 GCCGCAATTCGCGAGGACGATTCACCAGATCTGAGCGAAGTCAGAAGGATACTTCGAGAA 832 consensus_5526#1 GCCGCAATTCGCGAGGACGATTCACCAGATCTGAGCGAAGTCAGAGGGATACTTCGAGAA 775 ********************************************* ************** consensus_5526#0 CATCTGAAGGTTAGCTCAGAATTATTCCAGCCATTTCATCGGGCACCATTCTTTTTTCCA 892 consensus_5526#1 CATCTGAAG--------------------------------------------------- 784 ********* consensus_5526#0 TTCCATCCATCTAGTTGTCTGATGATTCTCTCTTCCAGATTCCCGATGCTCCTCTGAAAA 952 consensus_5526#1 --------------------------------------ATTCCCGATGCTCCTCTGAAAA 806 ********************** consensus_5526#0 CTCGACGGCTGGTCGTGAAAGTCTGCGACATTGTGACTCGCAGAGCCGCCCGTCTAGCCG 1012 consensus_5526#1 CTCGACGGCTGGTCGTGAAAGTCTGCGACATTGTGACTCGCAGAGCCGCCCGTCTAGCCG 866 ************************************************************ consensus_5526#0 CTGCAGGCATCGTGGGGATACTGAAGAAGCTGGGGAGGGATGGGAGCGGCGCGGCGTCGA 1072 consensus_5526#1 CTGCAGGCATCGTGGGGATACTGAAGAAGCTGGGGAGGGATGGGAGCGGCGCGGCGTCGA 926 ************************************************************ consensus_5526#0 GCGGGAGAGGTAGAGGGCAGCCGAGGAGGACGGTGGTGGCGATCGAGGGCGGGCTGTACC 1132 consensus_5526#1 GCGGGAGAGGTAGAGGGCAGCCGAGGAGGACGGTGGTGGCGATCGAGGGCGGGCTGTACC 986 ************************************************************ consensus_5526#0 AGGGTTACCCGGTGTTCAGGGAGTACCTGGACGAGGCCCTGGTGGAGATCCTGGGGGAGG 1192 consensus_5526#1 AGGGTTACCCGGTGTTCAGGGAGTACCTGGACGAGGCCCTGGTGGAGATCCTGGGGGAGG 1046 ************************************************************ consensus_5526#0 AGGTGGCGCGGAACGTGACGCTGAGGGTGACGGAGGATGGGTCGGGGGTCGGGGCTGCCC 1252 consensus_5526#1 AGGTGGCGCGGAACGTGACGCTGAGGGTGACGGAGGATGGGTCGGGGGTCGGGGCTGCCC 1106 ************************************************************ consensus_5526#0 TCCTCGCCGCCGTACATCCGTCGAATAGACAGCAACAAGGAGGTCCCATATAGTGAGAGA 1312 consensus_5526#1 TCCTCGCCGCCGTACATTCGTCGAATAGACAGCAACAAGGGGGTCCCATATAGTGAGAGA 1166 ***************** ********************** ******************* consensus_5526#0 GACAATGAAGATACAGCTAGCCCCTCTTGTTCAAATGTAAAAAAGGGACATTGTTTGATA 1372 consensus_5526#1 GACAATGAAGATACAGCTAGCCCCTCTTGTTCAAATGTAAAAAAGGGACATTGTTTGATA 1226 ************************************************************ consensus_5526#0 TCTATATTCATATATATAAAAATCTGGGTCTTGTGCAGAGAAATCCCGTTTTTTCTTGGC 1432 consensus_5526#1 TCTATATTCATATATATAAAAATCTGGGTC------------------------------ 1256 ****************************** consensus_5526#0 CTGCCATTCATGCTATGATAGTCTTACAGTATTTGCCATCTCTTGATTTCTGAATTCTCA 1492 consensus_5526#1 ------------------------------------------------------------ consensus_5526#0 CAGGCGAGGTGAATAAGGCGAAGTGAATGGAATGAGAGTATGAGACGAGTTACGTTCAGT 1552 consensus_5526#1 ------------------------------------------------------------ consensus_5526#0 AGCTTGGTTTTCTACTACAAGTGGGGAGCATGTAGTATATGTTTTCGCATGCGCTTTTCC 1612 consensus_5526#1 ------------------------------------------------------------ consensus_5526#0 ATTGGCAACGCACTGGATTCATGTAGCCTTGTTCTTTATTATGGCATATGGCATGCAACG 1672 consensus_5526#1 ------------------------------------------------------------ consensus_5526#0 TAGCTAGCTTGCATGACAGCATGAGTGCAAAACGACGTGCAATGGAGTGTAATACTAATA 1732 consensus_5526#1 ------------------------------------------------------------ consensus_5526#0 AAACTTATATAAAAAAAAGTGCACTCCACCTTTCAGGGATTAAAAATAAAAAATAAAAAT 1792 consensus_5526#1 ------------------------------------------------------------ consensus_5526#0 AAAACGGAGCC 1803 consensus_5526#1 ----------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||