These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5533#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1337 fasta sequence [TCTGGACCACCGATTTCCAATCCAACGAACACTCTCGCTGCCGCGGCCGCCGCCTCCTCGCCCCATCCAGCACTCCACGCCCCTCGAATCCATCCGCCGCCGCCGCGATGCCGCCTCCGCCGCACGCCGCTTTCCTCCTCCGGTCCCGGGGTCTACTGCCTCCTCTCCTCCGACGAAGCCCCAGCTCCGGCCCGCCGCCTCCGCTCCTCCGCCCGACCAGGCAGCGCCGCGGCCTCTCCGTCCGCGCCTCCGCTGCGGAGCTCGCCGCCGGAGTTGCAGGGGTGGAGGATGCGGTGGTGGGCTTCGTCACCGGCAAGCGGAAGGCCACCGAGTTAGCCCACGCGGTGTGGAGAAGTATTGTTCGGAAAGGGGATACTGTGGTTGATGCCACATGCGGGAACGGCAATGATACATTCGCTATGCTTAAATGGTAGCTGATGAAAGAGTACAAGGGCGTGTATATGGGTTGGACATTCAGGAGTCCGCGATAGCCAGCACTTCCTCTTTTCTGAAAATGGCCGTCAATAGCCATGAGCTCGAACTTGTCAAGTTGTTTACAATCTGTCACAGTAGAATGGAGGAGGTCGTCCCAAAAGATTTCCCTGTCAGGCTTGTAGCATTCAACTTGGGCTATCTTCCAGGAGGAGATAAAACAATAATCACTGTACCTAAGACGACTGAGCTGGCTTTGCAAGCTGCCAGTAGCATTGTCAGTTCTGGGGGACTCATAAGTGTCCTTGTCTACATTGGACATCCAGGTGGAAGGGATGAACTTGATGTTGTTGAATCATTTGCATCAAGCTTGCCTATTGATACCTGGATGAGCTGCAAGTTTGAAATGCTCAATAGACCAGCGGCTCCAGTACTCATTCTCCTGTACAAGAAATGATCACACCTTCTATGACCTACTTGTGGGGAATGACGGAGTTAGTGAGCGACCACATGCTTACTTGCATGCCAAGTGCCACAATGACCAAGGATTCAAGATTTGAAGTTACAAGGCATTTCCATAGGATTTTACTGGGTGGACAGCTGTGGGTATTGATAACAACTTTTGAGAGCTTCTTTTTCGCCAGGCCAACTTTTGAGAGCTTCACAACTATATATATGTTTCAAGCACTGCAGTTTAAACGAAGGGCAATTGCTTTGAGCCACACTCGTGACTTTACTCCTTTTTAGGGTTGTGTTGATGTTTTGTATTGGCAACAATAAAGGGGTAGCACACGAGACATTAAAGTGGATGGATGCAAGGAGACAAGGGTTTAGACATGTTTAGGCATACCCTACTCTTGTTTCGTGGATTGGATCTGCCGGATTGTATTGATCATGGTGTTCTT] [+] EMBL AK063707 [TCTGGACCACCGATTTCCAATCCAACGAACACTCTCGCTGCCGCGGCCGCCGCCTCCTCGCCCCATCCAGCACTCCACGCCCCTCGAATCCATCCGCCGCCGCCGCGATGCCGCCTCCGCCGCACGCCGCTTTCCTCCTCCGGTCCCGGGGTCTACTGCCTCCTCTCCTCCGACGAAGCCCCAGCTCCGGCCCGCCGCCTCCGCTCCTCCGCCCGACCAGGCAGCGCCGCGGCCTCTCCGTCCGCGCCTCCGCTGCGGAGCTCGCCGCCGGAGTTGCAGGGGTGGAGGATGCGGTGGTGGGCTTCGTCACCGGCAAGCGGAAGGCCACCGAGTTAGCCCACGCGGTGTGGAGAAGTATTGTTCGGAAAGGGGATACTGTGGTTGATGCCACATGCGGGAACGGCAATGATACATTCGCTATGCTTAAATGGTAGCTGATGAAAGAGTACAAGGGCGTGTATATGGGTTGGACATTCAGGAGTCCGCGATAGCCAGCACTTCCTCTTTTCTGAAAATGGCCGTCAATAGCCATGAGCTCGAACTTGTCAAGTTGTTTACAATCTGTCACAGTAGAATGGAGGAGGTCGTCCCAAAAGATTTCCCTGTCAGGCTTGTAGCATTCAACTTGGGCTATCTTCCAGGAGGAGATAAAACAATAATCACTGTACCTAAGACGACTGAGCTGGCTTTGCAAGCTGCCAGTAGCATTGTCAGTTCTGGGGGACTCATAAGTGTCCTTGTCTACATTGGACATCCAGGTGGAAGGGATGAACTTGATGTTGTTGAATCATTTGCATCAAGCTTGCCTATTGATACCTGGATGAGCTGCAAGTTTGAAATGCTCAATAGACCAGCGGCTCCAGTACTCATTCTCCTGTACAAGAAATGATCACACCTTCTATGACCTACTTGTGGGGAATGACGGAGTTAGTGAGCGACCACATGCTTACTTGCATGCCAAGTGCCACAATGACCAAGGATTCAAGATTTGAAGTTACAAGGCATTTCCATAGGATTTTACTGGGTGGACAGCTGTGGGTATTGATAACAACTTTTGAGAGCTTCTTTTTCGCCAGGCCAACTTTTGAGAGCTTCACAACTATATATATGTTTCAAGCACTGCAGTTTAAACGAAGGGCAATTGCTTTGAGCCACACTCGTGACTTTACTCCTTTTTAGGGTTGTGTTGATGTTTTGTATTGGCAACAATAAAGGGGTAGCACACGAGACATTAAAGTGGATGGATGCAAGGAGACAAGGGTTTAGACATGTTTAGGCATACCCTACTCTTGTTTCGTGGATTGGATCTGCCGGATTGTATTGATCATGGTGTTCTT] [-] EMBL CB619325 [ AATCNCTGTACCTAAGACGACTGAGCTGGCTTTGCAAGCTGCCAGTAGCATTGTCAGTTCTGGGGGACTCATAAGTGTCCTTGTCTACATTGGACATCCAGGTGGAAGGGATGAACTTGATGTTGTTGAATCATTTGCATCAAGCTTGCCTATTGATACCTGGATGAGCTGCAAGTTTGAAATGCTCAATAGACCAGCGGCTCCAGTACTCATTCTCCTGTACAAGAAATGATCACACCTTCTATGACCTACTTGTGGGGAATGACGGAGTTAGTGAGCGACCACATGCTTACTTGCATGCCAAGTGCCACAATGACCAAGGACTCAAGATTTGAAGTTACAAGGCATTTCCATAGGATTTTACTGGGTGGACAGCTGTGGGTATTGATAACAACTTTTGAGAGCTTCTTTTTCGCCAGGCCAACTTTTGAGAGCTTCACAACTATATATATGTTTCAAGCACTGCAGTTTAAACGAAGGGCAATTGCTTTGAGCCACACTCGTGACTTTACTCCTTTTTAGGGTTGTGTTGATGTTTTGTATTGGCAACAATAAAGGGGTAGCACACGAGACATTAAAGTGGATGGATGCAAGGAGACAAGGGTTTAGACATGTTTAGGCATACCCTACTCTTGTTTCGTGGATTGGAAAGGCCGGATTGTATTGATCATGG ] consensusID : consensus_5533#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 790 fasta sequence [ATCCATCCGCCGCCGCCGCGATGCCGCCTCCGCCGCACGCCGCTTTCCTCCTCCGGTCCCGGGGTCTACTGCCTCCTCTCCTCCGACGAAGCCCCAGCTCCGGCCCGCCGCCTCCGCTCCTCCGCCCGACCAGGCAGCGCCGCGGCCTCTCCGTCCGCGCCTCCGCTGCGGAGCTCGCCGCCGGAGTTGCAGGGGTGGAGGATGCGGTGGTGGGCTTCGTCACCGGCAAGCGGAAGGCCACCGAGTTAGCCCACGCGGTGTGGAGAAGTATTGTTCGGAAAGGGGATACTGTGGTTGATGCCACATGCGGGAACGGCAATGATACATTCGCTATGCTTAAAATGGTAGCTGATGAAAGAGTACAAGGGCGTGTATATGGGTTGGACATTCAGGAGTCCGCGATAGCCAGCACTTCCTCTTTTCTGAAAATGGCCGTCAATAGCCATGAGATCTTAGTATATAGAAACAAGCATCATTGCCATATTCCCAGGAAATATCTGCAGTTTTGGGGTTGTTGCAATAACTTATCTTGGCTGCAGCTCGAACTTGTCAAGTTGTTTACAATCTGTCACAGTAGAATGGAGGAGGTCGTTCCAAAAGATTTCCCTGTCAGGCTTGTAGCATTCAACTTGGGCTATCTTCCAGGAGGAGATAAAACAATAATCACTGTACCTAAGACGACTGAGCTGGCTTTGCAAGCTGCCAGTAGCATTGTCAGTTCTGGGGGACTCATAAGTGTCCTTGTCTACATTGGACATCCAGGTGGAAGGGATGAACTTGATGTTGTTGA] [+] EMBL CB619324 [ATCCATCCGCCGCCGCCGCGATGCCGCCTCCGCCGCACGCCGCTTTCCTCCTCCGGTCCCGGGGTCTACTGCCTCCTCTCCTCCGACGAAGCCCCAGCTCCGGCCCGCCGCCTCCGCTCCTCCGCCCGACCAGGCAGCGCCGCGGCCTCTCCGTCCGCGCCTCCGCTGCGGAGCTCGCCGCCGGAGTTGCAGGGGTGGAGGATGCGGTGGTGGGCTTCGTCACCGGCAAGCGGAAGGCCACCGAGTTAGCCCACGCGGTGTGGAGAAGTATTGTTCGGAAAGGGGATACTGTGGTTGATGCCACATGCGGGAACGGCAATGATACATTCGCTATGCTTAAAATGGTAGCTGATGAAAGAGTACAAGGGCGTGTATATGGGTTGGACATTCAGGAGTCCGCGATAGCCAGCACTTCCTCTTTTCTGAAAATGGCCGTCAATAGCCATGAGATCTTAGTATATAGAAACAAGCATCATTGCCATATTCCCAGGAAATATCTGCAGTTTTGGGGTTGTTGCAATAACTTATCTTGGCTGCAGCTCGAACTTGTCAAGTTGTTTACAATCTGTCACAGTAGAATGGAGGAGGTCGTTCCAAAAGATTTCCCTGTCAGGCTTGTAGCATTCAACTTGGGCTATCTTCCAGGAGGAGATAAAACAATAATCACTGTACCTAAGACGACTGAGCTGGCTTTGCAAGCTGCCAGTAGCATTGTCAGTTCTGGGGGACTCATAAGTGTCCTTGTCTACATTGGACATCCAGGTGGAAGGGATGAACTTGATGTTGTTGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5533#0 TCTGGACCACCGATTTCCAATCCAACGAACACTCTCGCTGCCGCGGCCGCCGCCTCCTCG 60 consensus_5533#1 ------------------------------------------------------------ consensus_5533#0 CCCCATCCAGCACTCCACGCCCCTCGAATCCATCCGCCGCCGCCGCGATGCCGCCTCCGC 120 consensus_5533#1 ---------------------------ATCCATCCGCCGCCGCCGCGATGCCGCCTCCGC 33 ********************************* consensus_5533#0 CGCACGCCGCTTTCCTCCTCCGGTCCCGGGGTCTACTGCCTCCTCTCCTCCGACGAAGCC 180 consensus_5533#1 CGCACGCCGCTTTCCTCCTCCGGTCCCGGGGTCTACTGCCTCCTCTCCTCCGACGAAGCC 93 ************************************************************ consensus_5533#0 CCAGCTCCGGCCCGCCGCCTCCGCTCCTCCGCCCGACCAGGCAGCGCCGCGGCCTCTCCG 240 consensus_5533#1 CCAGCTCCGGCCCGCCGCCTCCGCTCCTCCGCCCGACCAGGCAGCGCCGCGGCCTCTCCG 153 ************************************************************ consensus_5533#0 TCCGCGCCTCCGCTGCGGAGCTCGCCGCCGGAGTTGCAGGGGTGGAGGATGCGGTGGTGG 300 consensus_5533#1 TCCGCGCCTCCGCTGCGGAGCTCGCCGCCGGAGTTGCAGGGGTGGAGGATGCGGTGGTGG 213 ************************************************************ consensus_5533#0 GCTTCGTCACCGGCAAGCGGAAGGCCACCGAGTTAGCCCACGCGGTGTGGAGAAGTATTG 360 consensus_5533#1 GCTTCGTCACCGGCAAGCGGAAGGCCACCGAGTTAGCCCACGCGGTGTGGAGAAGTATTG 273 ************************************************************ consensus_5533#0 TTCGGAAAGGGGATACTGTGGTTGATGCCACATGCGGGAACGGCAATGATACATTCGCTA 420 consensus_5533#1 TTCGGAAAGGGGATACTGTGGTTGATGCCACATGCGGGAACGGCAATGATACATTCGCTA 333 ************************************************************ consensus_5533#0 TGCTTAAA-TGGTAGCTGATGAAAGAGTACAAGGGCGTGTATATGGGTTGGACATTCAGG 479 consensus_5533#1 TGCTTAAAATGGTAGCTGATGAAAGAGTACAAGGGCGTGTATATGGGTTGGACATTCAGG 393 ******** *************************************************** consensus_5533#0 AGTCCGCGATAGCCAGCACTTCCTCTTTTCTGAAAATGGCCGTCAATAGCCATGAG---- 535 consensus_5533#1 AGTCCGCGATAGCCAGCACTTCCTCTTTTCTGAAAATGGCCGTCAATAGCCATGAGATCT 453 ******************************************************** consensus_5533#0 ------------------------------------------------------------ consensus_5533#1 TAGTATATAGAAACAAGCATCATTGCCATATTCCCAGGAAATATCTGCAGTTTTGGGGTT 513 consensus_5533#0 --------------------------CTCGAACTTGTCAAGTTGTTTACAATCTGTCACA 569 consensus_5533#1 GTTGCAATAACTTATCTTGGCTGCAGCTCGAACTTGTCAAGTTGTTTACAATCTGTCACA 573 ********************************** consensus_5533#0 GTAGAATGGAGGAGGTCGTCCCAAAAGATTTCCCTGTCAGGCTTGTAGCATTCAACTTGG 629 consensus_5533#1 GTAGAATGGAGGAGGTCGTTCCAAAAGATTTCCCTGTCAGGCTTGTAGCATTCAACTTGG 633 ******************* **************************************** consensus_5533#0 GCTATCTTCCAGGAGGAGATAAAACAATAATCACTGTACCTAAGACGACTGAGCTGGCTT 689 consensus_5533#1 GCTATCTTCCAGGAGGAGATAAAACAATAATCACTGTACCTAAGACGACTGAGCTGGCTT 693 ************************************************************ consensus_5533#0 TGCAAGCTGCCAGTAGCATTGTCAGTTCTGGGGGACTCATAAGTGTCCTTGTCTACATTG 749 consensus_5533#1 TGCAAGCTGCCAGTAGCATTGTCAGTTCTGGGGGACTCATAAGTGTCCTTGTCTACATTG 753 ************************************************************ consensus_5533#0 GACATCCAGGTGGAAGGGATGAACTTGATGTTGTTGAATCATTTGCATCAAGCTTGCCTA 809 consensus_5533#1 GACATCCAGGTGGAAGGGATGAACTTGATGTTGTTGA----------------------- 790 ************************************* consensus_5533#0 TTGATACCTGGATGAGCTGCAAGTTTGAAATGCTCAATAGACCAGCGGCTCCAGTACTCA 869 consensus_5533#1 ------------------------------------------------------------ consensus_5533#0 TTCTCCTGTACAAGAAATGATCACACCTTCTATGACCTACTTGTGGGGAATGACGGAGTT 929 consensus_5533#1 ------------------------------------------------------------ consensus_5533#0 AGTGAGCGACCACATGCTTACTTGCATGCCAAGTGCCACAATGACCAAGGATTCAAGATT 989 consensus_5533#1 ------------------------------------------------------------ consensus_5533#0 TGAAGTTACAAGGCATTTCCATAGGATTTTACTGGGTGGACAGCTGTGGGTATTGATAAC 1049 consensus_5533#1 ------------------------------------------------------------ consensus_5533#0 AACTTTTGAGAGCTTCTTTTTCGCCAGGCCAACTTTTGAGAGCTTCACAACTATATATAT 1109 consensus_5533#1 ------------------------------------------------------------ consensus_5533#0 GTTTCAAGCACTGCAGTTTAAACGAAGGGCAATTGCTTTGAGCCACACTCGTGACTTTAC 1169 consensus_5533#1 ------------------------------------------------------------ consensus_5533#0 TCCTTTTTAGGGTTGTGTTGATGTTTTGTATTGGCAACAATAAAGGGGTAGCACACGAGA 1229 consensus_5533#1 ------------------------------------------------------------ consensus_5533#0 CATTAAAGTGGATGGATGCAAGGAGACAAGGGTTTAGACATGTTTAGGCATACCCTACTC 1289 consensus_5533#1 ------------------------------------------------------------ consensus_5533#0 TTGTTTCGTGGATTGGATCTGCCGGATTGTATTGATCATGGTGTTCTT 1337 consensus_5533#1 ------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||