These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5681#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 819 fasta sequence [CCCTCCTGTTAAAGGTGAAGATTACATTTTGTATTGCCATCCAGAGATTCAGAAGACACCAAAGTCTGATAAACTGCGTCAGTGGTACTTATCTATGCTTCAAAAGGCTATTAAGGAGAACATTGTTGTCGAGTTGACAAATCTCTATGATCAATTTTTTGTCACTGCAAAAGAATGCAAGATAAAAGTATCTGCAGCTCGCTTGCCATATTTTGATGGAGATTATTGGCCAGGAGCTGCAGAAGATATTATCAACCAACTTCAACTAGAGGGTGATGGTAAGCTGCTGAAGAAGGGGAGAGTAAATAAAATTATCACAAAACGAGCTTTAAAAGCTGCCGGCCACACTGATCTAAGTGGGAATGCTTCAAAAGAGGCTATGCTGATGCAAAAACTTGGAGAAATCATTTGCCCAATTAAGGATGATCTCATCATGGTCCATTTGCAGTATTCGTGCAGTCACTGTTGTACCTTTATGGTGTCTGGAAGACGCTGGGTCTGCAATGAATGCAAAAGTTTTTATATTTGTGACAGGTGTTATAATGCAGAGCAGCGGCTTGAGGAGAAGGAGAGGCACCCAAGTAATAGTAAATGTTTGCATATACTCCACCCAGTTGAAATTGTTGGGGTCTCTGAAGATACCAAGGACAGAGATATTATCTTAGAAAATGAGATCTTTGACACCAGACAGGCATTCCTGAGTTTTTGTCAAGGGTATCATTATCAATATGACACCCTCCGCCGTGCAAAGCATTCCACCATGATGATGCTATACCACCTTCATAATCCAACTGGACCAGCTTTTGTTGCCACATGTAA] [+] EMBL CB677581 [CCCTCCTGTTAAAGGTGAAGATTACATTTTGTATTGCCATCCAGAGATTCAGAAGACACCAAAGTCTGATAAACTGCGTCAGTGGTACTTATCTATGCTTCAAAAGGCTATTAAGGAGAACATTGTTGTCGAGTTGACAAATCTCTATGATCAATTTTTTGTCACTGCAAAAGAATGCAAGATAAAAGTATCTGCAGCTCGCTTGCCATATTTTGATGGAGATTATTGGCCAGGAGCTGCAGAAGATATTATCAACCAACTTCAACTAGAGGGTGATGGTAAGCTGCTGAAGAAGGGGAGAGTAAATAAAATTATCACAAAACGAGCTTTAAAAGCTGCCGGCCACACTGATCTAAGTGGGAATGCTTCAAAAGAGGCTATGCTGATGCAAAAACTTGGAGAAATCATTTGCCCAATTAAGGATGATCTCATCATGGTCCATTTGCAGTATTCGTGCAGTCACTGTTGTACCTTTATGGTGTCTGGAAGACGCTGGGTCTGCAATGAATGCAAAAGTTTTTATATTTGTGACAGGTGTTATAATGCAGAGCAGCGGCTTGAGGAGAAGGAGAGGCACCCAAGTAATAGTAAATGTTTGCATATACTCCACCCAGTTGAAATTGTTGGGGTCTCTGAAGATACCAAGGACAGAGATATTATCTTAGAAAATGAGATCTTTGACACCAGACAGGCATTCCTGAGTTTTTGTCAAGGGTATCATTATCAATATGACACCCTCCGCCGTGCAAAGCATTCCACCATGATGATGCTATACCACCTTCATAATCCAACTGGACCAGCTTTTGTTGCCACATGTAA] consensusID : consensus_5681#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 794 fasta sequence [CAGGAGAGGAAAAGCATTGAGGAGGTTCCTGGAGCCGAAGGTCTTGTGGTTAGAGTTGTTTCATCAGTGGACAAGAAGCTGGAAGTAAAACCACGTTTTTTGGAAATTTTTCAAGAAGATAACTACCCGACAGAGTTCCCATACAAGTCCAAGGCTGTCCTTTTGTTCCAGAAAATAGAAGGTGTAGAAGTGTGCCTATTTGGAATGTATGTTCAAGAATTTGGTGCAGAATGCTCCTACCCGAACCAGCGTCGTGTTTATTTGTCATACCTGGATTCTGTTAAATACTTCAGGCCTGAGATTAGAACGGTGTCTGGAGAGGCGTTACGTACATTTGTTTATCATGAAATTCTGATAGGATATCTTGAATATTGCAAGCAGCGTGGATTCACAAGCTGTTACATATGGGCGTGCCCACCTTTAAAAGGTGAAGATTACATTTTGTACTGCCATCCTGAGATTCAGAAGACTCCAAAATCCGACAAATTGAGGGAGTGGTACTTATCTATGCTTCGAAAAGCTACCAAGGAGGAGATTGTTGTTGAGCTGACAAATCTATATGACCATTTCTTCATTACTATGGGGGAGTGCAAGGCTAAAGTGACTGCTTCTCGTTTGCCTTACTTTGATGGAGATTATTGGCCAGGAGCTGCAGAAGATATGATCAATCAACTTCGTCAAGAAGAAGATGACCGGAAGCAGCAGAAGAAGGGCAAGACAAAGAAGATTATTACAAAAAGAGCTCTTAAAGCTGCTGGCCACACCGATCTCAGTGGGAATGCTTCCAAGGATGC] [+] EMBL CB627754 [CAGGAGAGGAAAAGCATTGAGGAGGTTCCTGGAGCCGAAGGTCTTGTGGTTAGAGTTGTTTCATCAGTGGACAAGAAGCTGGAAGTAAAACCACGTTTTTTGGAAATTTTTCAAGAAGATAACTACCCGACAGAGTTCCCATACAAGTCCAAGGCTGTCCTTTTGTTCCAGAAAATAGAAGGTGTAGAAGTGTGCCTATTTGGAATGTATGTTCAAGAATTTGGTGCAGAATGCTCCTACCCGAACCAGCGTCGTGTTTATTTGTCATACCTGGATTCTGTTAAATACTTCAGGCCTGAGATTAGAACGGTGTCTGGAGAGGCGTTACGTACATTTGTTTATCATGAAATTCTGATAGGATATCTTGAATATTGCAAGCAGCGTGGATTCACAAGCTGTTACATATGGGCGTGCCCACCTTTAAAAGGTGAAGATTACATTTTGTACTGCCATCCTGAGATTCAGAAGACTCCAAAATCCGACAAATTGAGGGAGTGGTACTTATCTATGCTTCGAAAAGCTACCAAGGAGGAGATTGTTGTTGAGCTGACAAATCTATATGACCATTTCTTCATTACTATGGGGGAGTGCAAGGCTAAAGTGACTGCTTCTCGTTTGCCTTACTTTGATGGAGATTATTGGCCAGGAGCTGCAGAAGATATGATCAATCAACTTCGTCAAGAAGAAGATGACCGGAAGCAGCAGAAGAAGGGCAAGACAAAGAAGATTATTACAAAAAGAGCTCTTAAAGCTGCTGGCCACACCGATCTCAGTGGGAATGCTTCCAAGGATGC] [+] EMBL CB640255 [ GAGGAGGTTCCTGGAGCCGAAGGTCTTGTGGTTAGAGTTGTTTCATCAGTGGACAAGAAGCTGGAAGTAAAACCACGTTTTTTGGAAATTTTTCAAGAAGATAACTACCCGACAGAGTTCCCATACAAGTCCAAGGCTGTCCTTTTGTTCCAGAAAATAGAAGGTGTAGAAGTGTGCCTATTTGGAATGTATGTTCAAGAATTTGGTGCAGAATGCTCCTACCCGAACCAGCGTCGTGTTTATTTGTCATACCTGGATTCTGTTAAATACTTCAGGCCTGAGATTAGAACGGTGTCTGGAGAGGCGTTACGTACATTTGTTTATCATGAAATTCTGATAGGATATCTTGAATATTGCAAGCAGCGTGGATTCACAAGCTGTTACATATGGGCGTGCCCACCTTTAAAAGGTGAAGATTACATTTTGTACTGCCATCCTGAGATTCAGAAGACTCCAAAATCCGACAAATTGAGGGAGTGGTACTTATCTATGCTTCGAAAAGCTACCAAGGAGGAGATTGT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5681#0 CCCTCCTGTTAAAGGTGAAGATTACATTTTGTATTGCCATCCAGAGATTCAGAAGACACC 60 consensus_5681#1 ------CAGGAGAGGAAAAGCATTGAGGAGGTTCCTGGAGCCGAAGGTCTTGTGGTTAGA 54 * *** *** * * ** * ** ** * * * * consensus_5681#0 AAAGTCTGATAAACTGC------GTCAGTGGTACTTATCTATGCTTCAAAAGGCTATTAA 114 consensus_5681#1 GTTGTTTCATCAGTGGACAAGAAGCTGGAAGTAAAACCACGTTTTTTGGAAATTTTTCAA 114 ** * ** * * * * *** * ** ** * * ** consensus_5681#0 GGAGAACATTGTT--GTCGAGTTGACAAATC--TCTATGATCAATTTTTTGTCACTGCAA 170 consensus_5681#1 GAAGATAACTACCCGACAGAGTTCCCATACAAGTCCAAGGCTGTCCTTTTGTTCCAGAAA 174 * *** * * ***** ** * ** * * ****** * * ** consensus_5681#0 A-AGAATGCA---AGATAAAAGTATCTGCAGCTCGCTTGCCATATTTTGATGGAGATTAT 226 consensus_5681#1 ATAGAAGGTGTAGAAGTGTGCCTATTTGGAATGTATGTTCAAGAATTTGGTGCAGAATGC 234 * **** * * * *** ** * * * * * **** ** *** * consensus_5681#0 TG--GCCAGGAGCTGCAGAAGATAT---TATCAA--CCAACTTCAACTAGA--------G 271 consensus_5681#1 TCCTACCCGAACCAGCGTCGTGTTTATTTGTCATACCTGGATTCTGTTAAATACTTCAGG 294 * ** * * * ** * * * *** * *** ** * * consensus_5681#0 GGTGATGGTAAGCTG----CTGAAGAAGGGGAGAGTAAATAAAATTATCACAAAACGAGC 327 consensus_5681#1 CCTGAGATTAGAACGGTGTCTGGAGAGGCGTTACGTACATTTGTTTATCATGAAAT---T 351 *** ** * *** *** * * *** ** ****** *** consensus_5681#0 TTTAAAAGCTGCCGGCCACACTGATCTAAGTGGGAATGCTTCAAAAGAGGCTA--TGCTG 385 consensus_5681#1 CTGATAGGATATCTTGAATATTG---CAAGCAGCGTGGATTCACAAGCTGTTACATATGG 408 * * * * * * * * ** *** * * **** *** * ** * * consensus_5681#0 ATGCAAAAACTTGGAGAAATCATTTGCCCAATTAAGGATGATCTCATCATGGTCCATTTG 445 consensus_5681#1 GCGTGCCCACCTTTAAAAGGTGAAGATTACATTTTGTAC--TGCCATCCTGAG--ATTCA 464 * ** * * ** *** * * * **** ** *** consensus_5681#0 CAGTATTCGTGCAGTCACTGTTGTACCTTTATGGTGTCTGGAAGACGCTGGGTCTGCAAT 505 consensus_5681#1 GAAGACTCCAAAATCCGACAAATTGAGGGAGTGGTACTTATCTATGCTTCGAAAAGCTAC 524 * * ** * * * **** * * * ** * consensus_5681#0 GAATGCAAAAGTTTTTATATTTGTGACAGGTGTTATAATGCAGAGCAGCGGCTTGAGGAG 565 consensus_5681#1 CAAGGAGGAGATTGTTGTTGAGCTGACAAAT------CTATATGACCATTTCTTCATTAC 578 ** * * ** ** * ***** * * * * *** * * consensus_5681#0 AAGGAGAGGCACCCAAGTAATAGTAAATGTTTG-CATATACTCCACCCAGTTGAA-ATTG 623 consensus_5681#1 TATGGGGGAGTGCAAGGCTAAAGTGACTGCTTCTCGTTTGCCTTACTTTGATGGAGATTA 638 * * * * * * * * *** * ** ** * * * * ** * ** * *** consensus_5681#0 TTGGGGTCTCTGAAGATACCAAGGACA-GAGATATTATCTTAGAAAATGAGATCTTTGAC 682 consensus_5681#1 TTGG----CCAGGAGCTGCAGAAGATATGATCAATCAACTTCGTCAAGAAGAAGAT-GAC 693 **** * * ** * * * ** * ** ** * *** * ** *** * *** consensus_5681#0 ACCAGACAGGCATTCCTGAGTTTTTGTCAAGGGTATCATTATCAATATGACACCCTCCGC 742 consensus_5681#1 CGGAAGCAG-CAGAAGAAGGGCAAGACAAAGAAGATTATTACAAAAAGAGCTCTTAAAGC 752 * *** ** * *** ** **** ** * * * ** consensus_5681#0 CGT--GCAAAGCATTCCACCATGATGATGCTATACCACCTTCATAATCCAACTGGACCAG 800 consensus_5681#1 TGCTGGCCACACCGATCTCAGTGGGAATGCTTCCAAGGATGC------------------ 794 * ** * * * * ** ***** * * consensus_5681#0 CTTTTGTTGCCACATGTAA 819 consensus_5681#1 ------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||