These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5739#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 812 fasta sequence [ACAGCGCAAGAAAATGGCGGGTGCCATGACCATGAGTCGCCGCCGTCTCTCCCACGCGCTCCTCCTCGTGCTCGCGATCCTCCCCAACCTGGCCGCTCTCGCCGTCGCCGCCGGCGGCGGCAGCGGAGGCGGTGGCTTCTTCCCGCACCGGTCCCTCCTCCAGTCCTCCAGCTGCCAGCCGAGCGGCGCCATCACCGGAACGTCCGGCGACTGCAACGCGGACAACGGCTCCGAGTGCTGCCAGGACGGCGTCCAGTACATGACGTACGCCTGCTCGCCGCCCGTCGCCGCCGGCGGCACCGGCACCGCGGCCCTCCTCACGCTCAACAGCTTCGCCGACGGCGGGGACGGCGGCGGCGCGCCGTCCTGCACGGGGAGGTTCTACGACGACGGCCAGCTGGTGGTGGCGCTGTCCACGGGGTGGTTCGACGGGAGGAGCCGGTGCGAGAAGGACGTCGTCATCCGGGCGAGCGGCGGCGCGTCCGTGACGGCCATGGTCGTCGACGAGTGCGACTCCCAGCGCGGCTGCGACAGCGACCACAACTTCGAGCCGCCGTGCCGGAACAACATCGTCGACGGGTCGCCGGCGGTGTGGGACGCGCTGGGGCTCAACAAGGACGACGGCGAGGCCCAGATCACCTGGTCCGATGCTTGACGACGACGACGACACACGTAGTGACGTAGACGCCATGTAACACGGCCGTATAATTTCCCATTAATAAGCTTATATATATTCCCTAACAGTGATGTATCGTAATTTTTCTTTTGTAAAATTAAACACCTCTTGATATATCAAGTAATAAAGAGGGAAT] [+] EMBL AK102387 [ACAGCGCAAGAAAATGGCGGGTGCCATGACCATGAGTCGCCGCCGTCTCTCCCACGCGCTCCTCCTCGTGCTCGCGATCCTCCCCAACCTGGCCGCTCTCGCCGTCGCCGCCGGCGGCGGCAGCGGAGGCGGTGGCTTCTTCCCGCACCGGTCCCTCCTCCAGTCCTCCAGCTGCCAGCCGAGCGGCGCCATCACCGGAACGTCCGGCGACTGCAACGCGGACAACGGCTCCGAGTGCTGCCAGGACGGCGTCCAGTACATGACGTACGCCTGCTCGCCGCCCGTCGCCGCCGGCGGCACCGGCACCGCGGCCCTCCTCACGCTCAACAGCTTCGCCGACGGCGGGGACGGCGGCGGCGCGCCGTCCTGCACGGGGAGGTTCTACGACGACGGCCAGCTGGTGGTGGCGCTGTCCACGGGGTGGTTCGACGGGAGGAGCCGGTGCGAGAAGGACGTCGTCATCCGGGCGAGCGGCGGCGCGTCCGTGACGGCCATGGTCGTCGACGAGTGCGACTCCCAGCGCGGCTGCGACAGCGACCACAACTTCGAGCCGCCGTGCCGGAACAACATCGTCGACGGGTCGCCGGCGGTGTGGGACGCGCTGGGGCTCAACAAGGACGACGGCGAGGCCCAGATCACCTGGTCCGATGCTTGACGACGACGACGACACACGTAGTGACGTAGACGCCATGTAACACGGCCGTATAATTTCCCATTAATAAGCTTATATATATTCCCTAACAGTGATGTATCGTAATTTTTCTTTTGTAAAATTAAACACCTCTTGATATATCAAGTAATAAAGAGGGAAT] [+] EMBL CB628880 [ GCCATGACCATGAGTCGCCGCCGTCTCTCCCACGCGCTCCTCCTCGTGCTCGCGATCCTCCCCAACCTGGCCGCTCTCGCCGTCGCCGCCGGCGGCGGCAGCGGAGGCGGTGGCTTCTTCCCGCACCGGTCCCTCCTCCAGTCCTCCAGCTGCCAGCCGAGCGGCGCCATCACCGGAACGTCCGGCGACTGCAACGCGGACAACGGCTCCGAGTGCTGCCAGGACGGCGTCCAGTACACGACGTACGCCTGCTCGCCGCCCGTCGCCGCCGGCGGCACCGGCACCGCGGCCCTCCTCACGCTCAACAGCTTCGCCGACGGCGGGGACGGCGGCAGCGCACCGTCGTGCACGGGGAGGTTCTACCACGACGGCCAACTGGTGGTGGCGCTGTCCACGGGGTGGTTCGACGGGAGGAGCCCGTGCAAAAAGGACGTCCTAATTGGGGGGAGCGGTAGAGCGTCCGTGAGGGCGATGGTCCTCTACCACTGCCACTCCCATCGGAGATGCTACAGAGACCACAAATGCCAGCCGCCGTGCCGGAACAACATCGTCGACGGGTCGCCGGCGGGGTGGGACGCGC ] consensusID : consensus_5739#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 682 fasta sequence [GCCGAGCGGCGCCATCACCGGAACGTCCGGCGACTGCAACGCGGACAACGGCTCCGAGTGCTGCCAGGACGGCGTCCAGTACACGACGTACGCCTGCTCGCCGCCCGTCGCCGCCGGCGGCACCGGCACCGCGGCCCTCCTCACGCTCAACAGCTTCGCCGACGGCGGGGACGGCGGCAGCGCGCCGTCCTGCACGGGGAGGTTCTACGACGACGGCCAGCTGGTGGTGGCGCTGTCCACGGGGTGGTTCGACGGGAGGAGCCGGTGCGAGAAGGACGTCGTCATCCGGGCGAGCGGCGGCGCGTCCGTGACGGCCATGGTCGTCGACGAGTGCGACTCCCAGCGCGGCTGCGACAGCGACCACAACTTCGAGCCGCCGTGCCGGAACAACATCGTCGACGGGTCGCCGGCGGTGTGGGACGCGCTGGGGCTCAACAAGGACGACGGCGAGGCCCAGATCACCTGGTCCGATGCTTGACGACGACGACGACACACGTAGTGACGTAGACGCCATGTAACACGGACGTATAATTTCCCATTAATAAGCTTATATATATTCCCTAACAGTGATTTTACAGTCTCTGATGAGATATCGAGATGTATCGTAATTTTTCTTTTGTAAAATTAAGCATCTCTTGATATATCAAGCAATAAAGAGGGAATACTAAATTATACTAAGAGA] [-] EMBL CB628881 [GCCGAGCGGCGCCATCACCGGAACGTCCGGCGACTGCAACGCGGACAACGGCTCCGAGTGCTGCCAGGACGGCGTCCAGTACACGACGTACGCCTGCTCGCCGCCCGTCGCCGCCGGCGGCACCGGCACCGCGGCCCTCCTCACGCTCAACAGCTTCGCCGACGGCGGGGACGGCGGCAGCGCGCCGTCCTGCACGGGGAGGTTCTACGACGACGGCCAGCTGGTGGTGGCGCTGTCCACGGGGTGGTTCGACGGGAGGAGCCGGTGCGAGAAGGACGTCGTCATCCGGGCGAGCGGCGGCGCGTCCGTGACGGCCATGGTCGTCGACGAGTGCGACTCCCAGCGCGGCTGCGACAGCGACCACAACTTCGAGCCGCCGTGCCGGAACAACATCGTCGACGGGTCGCCGGCGGTGTGGGACGCGCTGGGGCTCAACAAGGACGACGGCGAGGCCCAGATCACCTGGTCCGATGCTTGACGACGACGACGACACACGTAGTGACGTAGACGCCATGTAACACGGACGTATAATTTCCCATTAATAAGCTTATATATATTCCCTAACAGTGATTTTACAGTCTCTGATGAGATATCGAGATGTATCGTAATTTTTCTTTTGTAAAATTAAGCATCTCTTGATATATCAAGCAATAAAGAGGGAATACTAAATTATACTAAGAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5739#0 ACAGCGCAAGAAAATGGCGGGTGCCATGACCATGAGTCGCCGCCGTCTCTCCCACGCGCT 60 consensus_5739#1 ------------------------------------------------------------ consensus_5739#0 CCTCCTCGTGCTCGCGATCCTCCCCAACCTGGCCGCTCTCGCCGTCGCCGCCGGCGGCGG 120 consensus_5739#1 ------------------------------------------------------------ consensus_5739#0 CAGCGGAGGCGGTGGCTTCTTCCCGCACCGGTCCCTCCTCCAGTCCTCCAGCTGCCAGCC 180 consensus_5739#1 ---------------------------------------------------------GCC 3 *** consensus_5739#0 GAGCGGCGCCATCACCGGAACGTCCGGCGACTGCAACGCGGACAACGGCTCCGAGTGCTG 240 consensus_5739#1 GAGCGGCGCCATCACCGGAACGTCCGGCGACTGCAACGCGGACAACGGCTCCGAGTGCTG 63 ************************************************************ consensus_5739#0 CCAGGACGGCGTCCAGTACATGACGTACGCCTGCTCGCCGCCCGTCGCCGCCGGCGGCAC 300 consensus_5739#1 CCAGGACGGCGTCCAGTACACGACGTACGCCTGCTCGCCGCCCGTCGCCGCCGGCGGCAC 123 ******************** *************************************** consensus_5739#0 CGGCACCGCGGCCCTCCTCACGCTCAACAGCTTCGCCGACGGCGGGGACGGCGGCGGCGC 360 consensus_5739#1 CGGCACCGCGGCCCTCCTCACGCTCAACAGCTTCGCCGACGGCGGGGACGGCGGCAGCGC 183 ******************************************************* **** consensus_5739#0 GCCGTCCTGCACGGGGAGGTTCTACGACGACGGCCAGCTGGTGGTGGCGCTGTCCACGGG 420 consensus_5739#1 GCCGTCCTGCACGGGGAGGTTCTACGACGACGGCCAGCTGGTGGTGGCGCTGTCCACGGG 243 ************************************************************ consensus_5739#0 GTGGTTCGACGGGAGGAGCCGGTGCGAGAAGGACGTCGTCATCCGGGCGAGCGGCGGCGC 480 consensus_5739#1 GTGGTTCGACGGGAGGAGCCGGTGCGAGAAGGACGTCGTCATCCGGGCGAGCGGCGGCGC 303 ************************************************************ consensus_5739#0 GTCCGTGACGGCCATGGTCGTCGACGAGTGCGACTCCCAGCGCGGCTGCGACAGCGACCA 540 consensus_5739#1 GTCCGTGACGGCCATGGTCGTCGACGAGTGCGACTCCCAGCGCGGCTGCGACAGCGACCA 363 ************************************************************ consensus_5739#0 CAACTTCGAGCCGCCGTGCCGGAACAACATCGTCGACGGGTCGCCGGCGGTGTGGGACGC 600 consensus_5739#1 CAACTTCGAGCCGCCGTGCCGGAACAACATCGTCGACGGGTCGCCGGCGGTGTGGGACGC 423 ************************************************************ consensus_5739#0 GCTGGGGCTCAACAAGGACGACGGCGAGGCCCAGATCACCTGGTCCGATGCTTGACGACG 660 consensus_5739#1 GCTGGGGCTCAACAAGGACGACGGCGAGGCCCAGATCACCTGGTCCGATGCTTGACGACG 483 ************************************************************ consensus_5739#0 ACGACGACACACGTAGTGACGTAGACGCCATGTAACACGGCCGTATAATTTCCCATTAAT 720 consensus_5739#1 ACGACGACACACGTAGTGACGTAGACGCCATGTAACACGGACGTATAATTTCCCATTAAT 543 **************************************** ******************* consensus_5739#0 AAGCTTATATATATTCCCTAACAGTGAT----------------------------GTAT 752 consensus_5739#1 AAGCTTATATATATTCCCTAACAGTGATTTTACAGTCTCTGATGAGATATCGAGATGTAT 603 **************************** **** consensus_5739#0 CGTAATTTTTCTTTTGTAAAATTAAACACCTCTTGATATATCAAGTAATAAAGAGGGAAT 812 consensus_5739#1 CGTAATTTTTCTTTTGTAAAATTAAGCATCTCTTGATATATCAAGCAATAAAGAGGGAAT 663 ************************* ** **************** ************** consensus_5739#0 ------------------- consensus_5739#1 ACTAAATTATACTAAGAGA 682 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||