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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5795#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 937 fasta sequence
[AGAGGCTAAAAGCTAGCTAGGTGTAGATAGCTTCTTGTGATATATTGCCTCTGCTTGCCATGGCGGTAGCTCACCTTCTTATCCAACTCATCTCCATGGCTGGCAATGGTGTTGGAGCCTGCAGGGTGCAGATTATTCCGGCCATTATCTTTCTTCAGCTCCTCTTTAGAGCTCTTGGCGCGGATGGCGCGTCGTCGTTCAGCTTCACCAACAGCTGCCAGTATCCGGTGTGGGTGGGCGTGCTCCACGGCGCCAGCTCGCCGGCGCTGGCGCGCTCCGGCTTCTACCTCGCGCCGTCGGGCACGTACCACCTCGCCGCGCCGTCGTCGGGGACATGGTCCGGCACGTTCTGGGCGCGCACCGGCTGCGCCGTCGACTCCTCCACCGGCCGCTTCACCTGCGCCACCGCGGACTGCGGCTCCGGCGACGTCGCCTGCAACGGCCGCGGCCCGTCGCCGCCGGTCACGCTCGCCGAGATCACCCTCGCCGCGCCGGGCTCCGGCGGCCAGGACTTCTACGACGTCAGCCTCGTCGACGGGTTCAACGTGCCGGTGCGCCTCGCGCCGTCGTCGTCGGGCGGCGGCGGGGGCGACTGCCACGCCGTGTCGTGCGCGGGCGACGTTAACGCCGCGTGCCCCTCCGACCTCCGCGTCGTGTCCGGCGCCGGCGCCGTCGTGGCGTGCCGGAGCGCGTGCGACGCGTACCGGAGCGCGCGCTACTGCTGCACCGGCGCCTACGGCTCGCCGGCGGCGTGCGGGCCCACCGACTACTCGCAGGTGTTCAAGGCCGCGTGCCCGGCGGCGTACAGCTACGCCTACGATGACGCCAGCAGCACGTTCACCTGCTTCGGAGCATCCAGCTATGACGTCACCTTCTGCCCTCGATCTTAATTACAATGTGATTGTTGCTATATAAGTTATATGAAACTATATCATCA]
[+] EMBL AK107984 [AGAGGCTAAAAGCTAGCTAGGTGTAGATAGCTTCTTGTGATATATTGCCTCTGCTTGCCATGGCGGTAGCTCACCTTCTTATCCAACTCATCTCCATGGCTGGCAATGGTGTTGGAGCCTGCAGGGTGCAGATTATTCCGGCCATTATCTTTCTTCAGCTCCTCTTTAGAGCTCTTGGCGCGGATGGCGCGTCGTCGTTCAGCTTCACCAACAGCTGCCAGTATCCGGTGTGGGTGGGCGTGCTCCACGGCGCCAGCTCGCCGGCGCTGGCGCGCTCCGGCTTCTACCTCGCGCCGTCGGGCACGTACCACCTCGCCGCGCCGTCGTCGGGGACATGGTCCGGCACGTTCTGGGCGCGCACCGGCTGCGCCGTCGACTCCTCCACCGGCCGCTTCACCTGCGCCACCGCGGACTGCGGCTCCGGCGACGTCGCCTGCAACGGCCGCGGCCCGTCGCCGCCGGTCACGCTCGCCGAGATCACCCTCGCCGCGCCGGGCTCCGGCGGCCAGGACTTCTACGACGTCAGCCTCGTCGACGGGTTCAACGTGCCGGTGCGCCTCGCGCCGTCGTCGTCGGGCGGCGGCGGGGGCGACTGCCACGCCGTGTCGTGCGCGGGCGACGTTAACGCCGCGTGCCCCTCCGACCTCCGCGTCGTGTCCGGCGCCGGCGCCGTCGTGGCGTGCCGGAGCGCGTGCGACGCGTACCGGAGCGCGCGCTACTGCTGCACCGGCGCCTACGGCTCGCCGGCGGCGTGCGGGCCCACCGACTACTCGCAGGTGTTCAAGGCCGCGTGCCCGGCGGCGTACAGCTACGCCTACGATGACGCCAGCAGCACGTTCACCTGCTTCGGAGCATCCAGCTATGACGTCACCTTCTGCCCTCGATCTTAATTACAATGTGATTGTTGCTATATAAGTTATATGAAACTATATCATCA]
[+] EMBL OSS4969A [ CTAGGTGTAGATAGCTTCTTGTGATATATTGCCTCTGCTTGCCATGGCGGTAG TCACCTTCTTATCCAACTCATCTCCATGGCTGGCAATGGTGTTGGAGCCTGCAGGGTGCAGATTATTCCGGCCATTATCTTTCTTCAGCTCCTCTTTAGNGCTCTNGGNGCGGATGGCGCGTCGTCGTTCAGCTTCACCAACAGCTGCCAGTATCCGGNGTGGGTGGGNGTGCTCCACGGCGCCACTTCGCCGGCGCTGGCGCGCTCCGGCTTCTACCTCGCGANGTCGGGCACGTACCACCTCGCCGCGCCGTCGTCGGGGACATGGTCCGGCACGT ]
consensusID : consensus_5795#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 636 fasta sequence
[CATGGTCCGGCACGTTCTGGGCGCGCACCGGCTGCGCCGTCGACTCCTCCACCGGCCGCTTCACCTGCGCCACCGCCGACTGCGGCTCGGGCGACGTCGCCTGCAACGGCCGCGGCCCGTCGCCGCCGGTCACGCTCGCCGAGATCACCCTCGCCGCGCCGGGCTCCGGCGGCCAGGACTTCTACGATGTCAGCCTCGTCGACGGGTTCAACGTGCCGGTGCGCCTCGCGCCGTCGTCCTCGGGCGGCGGCGGCGACTGCCACGCCGTGTCGTGCGCGGGCGACGTGAACGCCGCGTGCCCCTCCGACCTCCGCGTCGTGTCCGGCGGCGGCGCCGTCGTGGCGTGCCGGAGCGCGTGCGACGCGTACCGGAGCGCGCGCTACTGCTGCACCGGCGCCTACGGCTCGCCGGCGGCGTGCGGGCCCACCGACTACTCGCAGGTGTTCAAGGCCGCGTGCCCGGCGGCGTACAGCTACGCCTACGATGACGCCAGCAGCACGTTCACCTGCTTCGGAGCATCCAGCTATGACGTCACCTTCTGTCCTCTCTCCTAGTTACAATGTGATTGCTGCTAATTATAAGTTACTCCCTCTCTCTCAAAATAAGCGTAGCTATGACTGTTATGTATCCAACTTT]
[+] EMBL BF430860 [CATGGTCCGGCACGTTCTGGGCGCGCACCGGCTGCGCCGTCGACTCCTCCACCGGCCGCTTCACCTGCGCCACCGCCGACTGCGGCTCGGGCGACGTCGCCTGCAACGGCCGCGGCCCGTCGCCGCCGGTCACGCTCGCCGAGATCACCCTCGCCGCGCCGGGCTCCGGCGGCCAGGACTTCTACGATGTCAGCCTCGTCGACGGGTTCAACGTGCCGGTGCGCCTCGCGCCGTCGTCCTCGGGCGGCGGCGGCGACTGCCACGCCGTGTCGTGCGCGGGCGACGTGAACGCCGCGTGCCCCTCCGACCTCCGCGTCGTGTCCGGCGGCGGCGCCGTCGTGGCGTGCCGGAGCGCGTGCGACGCGTACCGGAGCGCGCGCTACTGCTGCACCGGCGCCTACGGCTCGCCGGCGGCGTGCGGGCCCACCGACTACTCGCAGGTGTTCAAGGCCGCGTGCCCGGCGGCGTACAGCTACGCCTACGATGACGCCAGCAGCACGTTCACCTGCTTCGGAGCATCCAGCTATGACGTCACCTTCTGTCCTCTCTCCTAGTTACAATGTGATTGCTGCTAATTATAAGTTACTCCCTCTCTCTCAAAATAAGCGTAGCTATGACTGTTATGTATCCAACTTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5795#0 AGAGGCTAAAAGCTAGCTAGGTGTAGATAGCTTCTTGTGATATATTGCCTCTGCTTGCCA 60
consensus_5795#1 ------------------------------------------------------------
consensus_5795#0 TGGCGGTAGCTCACCTTCTTATCCAACTCATCTCCATGGCTGGCAATGGTGTTGGAGCCT 120
consensus_5795#1 ------------------------------------------------------------
consensus_5795#0 GCAGGGTGCAGATTATTCCGGCCATTATCTTTCTTCAGCTCCTCTTTAGAGCTCTTGGCG 180
consensus_5795#1 ------------------------------------------------------------
consensus_5795#0 CGGATGGCGCGTCGTCGTTCAGCTTCACCAACAGCTGCCAGTATCCGGTGTGGGTGGGCG 240
consensus_5795#1 ------------------------------------------------------------
consensus_5795#0 TGCTCCACGGCGCCAGCTCGCCGGCGCTGGCGCGCTCCGGCTTCTACCTCGCGCCGTCGG 300
consensus_5795#1 ------------------------------------------------------------
consensus_5795#0 GCACGTACCACCTCGCCGCGCCGTCGTCGGGGACATGGTCCGGCACGTTCTGGGCGCGCA 360
consensus_5795#1 ---------------------------------CATGGTCCGGCACGTTCTGGGCGCGCA 27
***************************
consensus_5795#0 CCGGCTGCGCCGTCGACTCCTCCACCGGCCGCTTCACCTGCGCCACCGCGGACTGCGGCT 420
consensus_5795#1 CCGGCTGCGCCGTCGACTCCTCCACCGGCCGCTTCACCTGCGCCACCGCCGACTGCGGCT 87
************************************************* **********
consensus_5795#0 CCGGCGACGTCGCCTGCAACGGCCGCGGCCCGTCGCCGCCGGTCACGCTCGCCGAGATCA 480
consensus_5795#1 CGGGCGACGTCGCCTGCAACGGCCGCGGCCCGTCGCCGCCGGTCACGCTCGCCGAGATCA 147
* **********************************************************
consensus_5795#0 CCCTCGCCGCGCCGGGCTCCGGCGGCCAGGACTTCTACGACGTCAGCCTCGTCGACGGGT 540
consensus_5795#1 CCCTCGCCGCGCCGGGCTCCGGCGGCCAGGACTTCTACGATGTCAGCCTCGTCGACGGGT 207
**************************************** *******************
consensus_5795#0 TCAACGTGCCGGTGCGCCTCGCGCCGTCGTCGTCGGGCGGCGGCGGGGGCGACTGCCACG 600
consensus_5795#1 TCAACGTGCCGGTGCGCCTCGCGCCGTCGTCCTCGGGCGGCGGCG---GCGACTGCCACG 264
******************************* ************* ************
consensus_5795#0 CCGTGTCGTGCGCGGGCGACGTTAACGCCGCGTGCCCCTCCGACCTCCGCGTCGTGTCCG 660
consensus_5795#1 CCGTGTCGTGCGCGGGCGACGTGAACGCCGCGTGCCCCTCCGACCTCCGCGTCGTGTCCG 324
********************** *************************************
consensus_5795#0 GCGCCGGCGCCGTCGTGGCGTGCCGGAGCGCGTGCGACGCGTACCGGAGCGCGCGCTACT 720
consensus_5795#1 GCGGCGGCGCCGTCGTGGCGTGCCGGAGCGCGTGCGACGCGTACCGGAGCGCGCGCTACT 384
*** ********************************************************
consensus_5795#0 GCTGCACCGGCGCCTACGGCTCGCCGGCGGCGTGCGGGCCCACCGACTACTCGCAGGTGT 780
consensus_5795#1 GCTGCACCGGCGCCTACGGCTCGCCGGCGGCGTGCGGGCCCACCGACTACTCGCAGGTGT 444
************************************************************
consensus_5795#0 TCAAGGCCGCGTGCCCGGCGGCGTACAGCTACGCCTACGATGACGCCAGCAGCACGTTCA 840
consensus_5795#1 TCAAGGCCGCGTGCCCGGCGGCGTACAGCTACGCCTACGATGACGCCAGCAGCACGTTCA 504
************************************************************
consensus_5795#0 CCTGCTTCGGAGCATCCAGCTATGACGTCACCTTCTGCCCTCGATCTTAATTACAATGTG 900
consensus_5795#1 CCTGCTTCGGAGCATCCAGCTATGACGTCACCTTCTGTCCTCTCTCCTAGTTACAATGTG 564
************************************* **** ** ** **********
consensus_5795#0 ATTGTTGCTA--TATAAGTTATATGAAACTATATCATCA--------------------- 937
consensus_5795#1 ATTGCTGCTAATTATAAGTTAC-TCCCTCTCTCTCAAAATAAGCGTAGCTATGACTGTTA 623
**** ***** ********* * ** * *** *
consensus_5795#0 -------------
consensus_5795#1 TGTATCCAACTTT 636
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||