These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5815#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 566 fasta sequence [TTGCTGGTAACATGAAATTTTGTACCTGGCTGCTTGGTGGAATGTGTGTTGTGTTTGTGAAAAATAATGGCTGTTCCCAGTGGGACCTATTGATAAACTTGGTGCCTGAAGGAAAGGACGCTAGAAACCACCTGTGTGTTTGCCATGAGCCCATGGTAACTGAGGGAAGCTGCCATGTGTGCTGCGTAAATAAGATGTGGCATGCCCAATGTGTGCGCTGTGCAACGCCTGCATGTGGTTGTTAAAGCGCAACCTGTGTGCATGTGGTGCCCAGAATGGTTTGGGAGAAGCTTTGACCCCCCTGATAGAAAGGACCCAGTAGAGTCATTGCAAGATCTTCGCAGAAGTGACATGGACTGGACAAAGGAGCTCCTTTTGCCCCTGCTGTAGATGGACAACCATCTGAAGAGGACACAGTTTCTCAGTCTCCAAGACACAGTGGTTCCCAATATGGGATTAGTGGATTGCTTAATTACCACATTTCTTTTTTCTTGATATGTAAACCACTAGAGTTTCTTCTCCCTTGTAAAGACAGAATCTGCCAATGCCTTTCTTTCAAAAAAAAA] [+] EMBL BI803784 [TTGCTGGTAACATGAAATTTTGTACCTGGCTGCTTGGTGGAATGTGTGTTGTGTTTGTGAAAAATAATGGCTGTTCCCAGTGGGACCTATTGATAAACTTGGTGCCTGAAGGAAAGGACGCTAGAAACCACCTGTGTGTTTGCCATGAGCCCATGGTAACTGAGGGAAGCTGCCATGTGTGCTGCGTAAATAAGATGTGGCATGCCCAATGTGTGCGCTGTGCAACGCCTGCATGTGGTTGTTAAAGCGCAACCTGTGTGCATGTGGTGCCCAGAATGGTTTGGGAGAAGCTTTGACCCCCCTGATAGAAAGGACCCAGTAGAGTCATTGCAAGATCTTCGCAGAAGTGACATGGACTGGACAAAGGAGCTCCTTTTGCCCCTGCTGTAGATGGACAACCATCTGAAGAGGACACAGTTTCTCAGTCTCCAAGACACAGTGGTTCCCAATATGGGATTAGTGGATTGCTTAATTACCACATTTCTTTTTTCTTGATATGTAAACCACTAGAGTTTCTTCTCCCTTGTAAAGACAGAATCTGCCAATGCCTTTCTTTCAAAAAAAAA] consensusID : consensus_5815#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 532 fasta sequence [GTTTCACACTTTCTTTAGGCTACAATTTTCAAACTTGATACAGTCGGTACACAGTCATTTCTGTACATAAATTTTACTGCTCTTGTGAATTTTTTTTTAAAAAAATGCTTTCAGTGGACTATTATAAACTTGTCTAAGAAGAGCAGAACACTGTTGTTTCCATAGCCATGTAACTAGGAAGCTCCATTTCTCGTAATAAGATTGCATCACAATTTCGCTTCAAGCCTCATTGTTTTAAGGCAACCTTTCATTGTCACAGAATGTTTGGAGAAGCTTTACCCACTGAAGAAAGACACAGTAGAGTCATTGCAAGATCTTGCAGAAGTGACATGGACTGCAAAGGAGCTCCTTTTCGCATGCTGTAGATGACAACCATCTGAAGAGGAACAGTTTCTCAGTCTCCAAGAACAGTGTTTCAATATGGGATTAGTGATTGCTTAATTACACATTTCTTTTTTCTTGATATGTAAAGCACTAGAGTTTCTTTCCCTTGTAAAGAAGAATCTGGCATGGCTTTCTTTCAAAAAAAAAA] [+] EMBL BI804675 [GTTTCACACTTTCTTTAGGCTACAATTTTCAAACTTGATACAGTCGGTACACAGTCATTTCTGTACATAAATTTTACTGCTCTTGTGAATTTTTTTTTAAAAAAATGCTTTCAGTGGACTATTATAAACTTGTCTAAGAAGAGCAGAACACTGTTGTTTCCATAGCCATGTAACTAGGAAGCTCCATTTCTCGTAATAAGATTGCATCACAATTTCGCTTCAAGCCTCATTGTTTTAAGGCAACCTTTCATTGTCACAGAATGTTTGGAGAAGCTTTACCCACTGAAGAAAGACACAGTAGAGTCATTGCAAGATCTTGCAGAAGTGACATGGACTGCAAAGGAGCTCCTTTTCGCATGCTGTAGATGACAACCATCTGAAGAGGAACAGTTTCTCAGTCTCCAAGAACAGTGTTTCAATATGGGATTAGTGATTGCTTAATTACACATTTCTTTTTTCTTGATATGTAAAGCACTAGAGTTTCTTTCCCTTGTAAAGAAGAATCTGGCATGGCTTTCTTTCAAAAAAAAAA] [+] EMBL BI803039 [ ACACAGTCATTTCTGTACATAAATTTTACTGCTCTTGTGAATTTTTTTTTAAAAAAATGCTTTCAGTGGACTATTATAAACTTGTCTAAGAAGAGCAGAACACTGTTGTTTCCATAGCCATGTAACTAGGAAGCTCCATTTCTCGTAATAAGATTGCATCACAATTTCGCTTCAAGCCTCATTGTTTTAAGGCAACCTTTCATTGTCACAGAATGTTTGGAGAAGCTTTACCCACTGAAGAAAGACACAGTAGAGTCATTGCAAGATCTTGCAGAAGTGACATGGACTGCAAAGGAGCTCCTTTTCGCATCCTGTAGATGACAACCATCTGAAGAGGAACAGTTTCTCAGTCTCCAAGAACAGTGTTTCAATATGGGATTAGTGATTGCTTAATTACACATTTCTTTTTTCTTGATATGTAAA CACTAGAGTTTCTTTCCCTTGTAAAGAACCCTCTGCAATGCCTTTCTTTCAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5815#0 TTGCTGGTAACATGAAATTTTGTACCTGGCTGCTTGGTGGAATGTGTGTTGTGTTTGTGA 60 consensus_5815#1 ---------GTTTCACACTTTCT-TTAGGCTACAATTTTCAAACTTGATACAGTCGGTAC 50 * * * *** * **** * * ** * * ** ** consensus_5815#0 AAAATAATGGCTGTTCCCAGTGGGACCTATTGATAAACTTGGTGCCTGAAGGAAAGGACG 120 consensus_5815#1 ACAGTCATTTCTGTACATAAATTTTACTGCTCTTGTGAATTTTTTTTTAAAAAAATGCTT 110 * * * ** **** * * ** * * * * * ** *** * consensus_5815#0 CTAGAAACCACCTGTGTGTTTGCCATGAGCCCATGGTAACTGAGGGAAGCTGCCATGTGT 180 consensus_5815#1 TCAGTGGACTATTATAAACTTGTC-TAAG--AAGAGCAGAACACTGTTGTTTCCATA--- 164 ** * * * *** * * ** * * * * * * * **** consensus_5815#0 GCTGCGTAAATAAGATGTGGCATGCCC---AATGTGTGCGCTGTGCAACGCC--TGCATG 235 consensus_5815#1 GCCATGTAACTAGGAAGCTCCATTTCTCGTAATAAGATTGCATCACAATTTCGCTTCAAG 224 ** **** ** ** * *** * *** * ** *** * * ** * consensus_5815#0 --TGGTTGTTAAAGCGCAACCTGTGTGCATGTGGTGCCCAGAATGGTTTGGGAGAAGCTT 293 consensus_5815#1 CCTCATTGTTTTAAGGCAACCTTT-----CATTGT-CACAGAATG--TTTGGAGAAGCTT 276 * ***** * ******* * * ** * ******* ** ********** consensus_5815#0 TGACCCCCCTGATAGAAAGGACCCAGTAGAGTCATTGCAAGATCTTCGCAGAAGTGACAT 353 consensus_5815#1 TA--CCCACTG--AAGAAAGACACAGTAGAGTCATTGCAAGATCTT-GCAGAAGTGACAT 331 * *** *** * ** *** *********************** ************* consensus_5815#0 GGACTGGACAAAGGAGCTCCTTTTGCCCCTGCTGTAGATGGACAACCATCTGAAGAGGAC 413 consensus_5815#1 GGACTG--CAAAGGAGCTCCTTTT-CGCATGCTGTAGATG-ACAACCATCTGAAGAGGA- 386 ****** **************** * * *********** ****************** consensus_5815#0 ACAGTTTCTCAGTCTCCAAGACACAGTGGTTCCCAATATGGGATTAGTGGATTGCTTAAT 473 consensus_5815#1 ACAGTTTCTCAGTCTCCAAGA-ACAGTGTTTC--AATATGGGATTAGTG-ATTGCTTAAT 442 ********************* ****** *** *************** ********** consensus_5815#0 TACCACATTTCTTTTTTCTTGATATGTAAACCACTAGAGTTTCTTCTCCCTTGTAAAGAC 533 consensus_5815#1 TAC-ACATTTCTTTTTTCTTGATATGTAAAGCACTAGAGTTTCTT-TCCCTTGTAAAGA- 499 *** ************************** ************** ************* consensus_5815#0 AGAATCTGCCAATGCCTTTCTTTCAAAAAAAAA- 566 consensus_5815#1 AGAATCTGGCA-TGGCTTTCTTTCAAAAAAAAAA 532 ******** ** ** ****************** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||