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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5856#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1874 fasta sequence
[CTCTTCCTTCCTTCTCAGCTTCTCCAAGCTCGCGCGCAAGCAAGCCGCCGCCGCCGCCGCCGCCGGAGAGATGGACTCCCGCGGCTTCGATTCCGAAGGCCGGGAATTCTCCAGCGCCACCGAGATGTGGGCGCACGAAATCGGCGCCGCGGCGGATGCCCCGGTCTCCGCCGCGGTAGCCGAACCCGCTCCGGCCCCCGCCGCCGGAAGCAACGGGGTCGCCGGCGAGGAGGAGGCAGGCGGCGGCGGGAAGCGGGAGGAGTGGTACTCCAAGGCAATCGCCTACTGGCAAGGCGTGGAGGCGTCGACCGAGGGTGTCCTTGGAGGGTACGGATGCGTGAACGACGTGGACGTCAAGGGCAGCGACGCGTTCCTCCGTCCTCTCCTCGCCGAGCGATTCGGCGCCGCGAGGCGCCATCTCGTCGCCCTCGATTGTGGCTCGGGCATCGGGAGGGTTACAAAGAATTTTCTTCTTAGGCATTTCAACGAGGTTGATCTTGTTGAGCCAGTGTCCCATTTTCTAGAAGCGGCACAGGAAAATCTTACTGAATGTATGGAAGTAGGGGAAGATACACATAAGGCTGCTAATTTTTATTGTGTACCTCTTCAGGATTTCACTCCTGATGAAGGAAGATATGATGTAATATGGATCCAGTGGTGCATAGGGCAACTTCCTGATGATGACTTTATTTCATTTTTTAACCGTGCAAAGATTGGGCTCAAACCCAATGGATTTTTTGTACTGAAGGAGAATATTGCAAGAAACGGATTTGTTTTGGACAAGGAGGATAACAGTATCACTAGATCTGATGCGTACTTCAAGGAGCTATTTAAAAAATGTGGTTTATATATCCATAGCATTAAGGACCAGAGCGACCTTCCAAAGGAATTATTTGCTGTTAAAATGTATGCATTGGTGACTGAAAAGCCGAAAATTCAAAAAAATGGGAAGAGAAGGCGCCCTAAAAATTCACCCCCCGTTGAGAAATCCGTCTCCGACAACAATTCGTTGTCAGTCCCTCGCTTTGTCCCGGCGGATTTCGAGACCCGCTTGGAGCTCATCCCCTTTGTCAGAGGGGTGAGTCAACTTGTTTCGCCGGCTAGCGGGCCTAGCCCATTTACCGAGCTAAACGAGTTTGATGAGGGATGCACAGCGGTTACTCGTTCGGGCACTTTTAGCCCACTGCAACATGGAGCAGTCCGTTCGGGCCCGCCTCGACGGGTACAAGGACCGTCTACGTCGGCTCGAGGGAGACCTTGGTCGAAAAAACCAGGAGCGAGAGGTGGTGGCCGAATCCCTAAGGCAGGCTAAGGCCGAAAACAAAAAACTAAAGGAGGAACTGGAGAAGGCGAAGCACCAGAACGCTACCCTCTTGGACTACTACAATTCGTCCGAGGGGAAGATGAACAGCCTTCGCCAGGAGCTGGACTAGGCAAAGGCCGCAGCCGAAACCACGGCGAAAGAGTCTGCCCGCTCCGTTGCTGGGATTACAGATTCGGCCAAGTCGGCCAGCTATACTCTCCGGCTTGCCCTTCATGAGTTGGGCGCCCAGGCCAAAGGCGTTCCAGGCAAAAATGCTTCCGCGCTGGACTTCTCGGAATGGACACAACAAGCCGGAGGTGCCGTGGCTGAGACCGGCAGCAATTATGGTGATTGTTGTGCTCGGGTTTCGGCGGCTTTCGTGCTTGGGGTGCTCCAGGAAAATGGGTGCGAACATGTCGCCCAATTCCCGGAGTTTCGTCAAGGGAGATTGGCCGGAGAAGTCGTACCCCATCTCTACTACTCTTCGCGCTTGGCGAAAAGAGTACTGGCAGAAGGAGGGGTGAACCATCGCTAAGGGCTATCTCCGCGACCAACTGGAGAAGAGCGCGAA]
[+] EMBL AK100619 [CTCTTCCTTCCTTCTCAGCTTCTCCAAGCTCGCGCGCAAGCAAGCCGCCGCCGCCGCCGCCGCCGGAGAGATGGACTCCCGCGGCTTCGATTCCGAAGGCCGGGAATTCTCCAGCGCCACCGAGATGTGGGCGCACGAAATCGGCGCCGCGGCGGATGCCCCGGTCTCCGCCGCGGTAGCCGAACCCGCTCCGGCCCCCGCCGCCGGAAGCAACGGGGTCGCCGGCGAGGAGGAGGCAGGCGGCGGCGGGAAGCGGGAGGAGTGGTACTCCAAGGCAATCGCCTACTGGCAAGGCGTGGAGGCGTCGACCGAGGGTGTCCTTGGAGGGTACGGATGCGTGAACGACGTGGACGTCAAGGGCAGCGACGCGTTCCTCCGTCCTCTCCTCGCCGAGCGATTCGGCGCCGCGAGGCGCCATCTCGTCGCCCTCGATTGTGGCTCGGGCATCGGGAGGGTTACAAAGAATTTTCTTCTTAGGCATTTCAACGAGGTTGATCTTGTTGAGCCAGTGTCCCATTTTCTAGAAGCGGCACAGGAAAATCTTACTGAATGTATGGAAGTAGGGGAAGATACACATAAGGCTGCTAATTTTTATTGTGTACCTCTTCAGGATTTCACTCCTGATGAAGGAAGATATGATGTAATATGGATCCAGTGGTGCATAGGGCAACTTCCTGATGATGACTTTATTTCATTTTTTAACCGTGCAAAGATTGGGCTCAAACCCAATGGATTTTTTGTACTGAAGGAGAATATTGCAAGAAACGGATTTGTTTTGGACAAGGAGGATAACAGTATCACTAGATCTGATGCGTACTTCAAGGAGCTATTTAAAAAATGTGGTTTATATATCCATAGCATTAAGGACCAGAGCGACCTTCCAAAGGAATTATTTGCTGTTAAAATGTATGCATTGGTGACTGAAAAGCCGAAAATTCAAAAAAATGGGAAGAGAAGGCGCCCTAAAAATTCACCCCCCGTTGAGAAATCCGTCTCCGACAACAATTCGTTGTCAGTCCCTCGCTTTGTCCCGGCGGATTTCGAGACCCGCTTGGAGCTCATCCCCTTTGTCAGAGGGGTGAGTCAACTTGTTTCGCCGGCTAGCGGGCCTAGCCCATTTACCGAGCTAAACGAGTTTGATGAGGGATGCACAGCGGTTACTCGTTCGGGCACTTTTAGCCCACTGCAACATGGAGCAGTCCGTTCGGGCCCGCCTCGACGGGTACAAGGACCGTCTACGTCGGCTCGAGGGAGACCTTGGTCGAAAAAACCAGGAGCGAGAGGTGGTGGCCGAATCCCTAAGGCAGGCTAAGGCCGAAAACAAAAAACTAAAGGAGGAACTGGAGAAGGCGAAGCACCAGAACGCTACCCTCTTGGACTACTACAATTCGTCCGAGGGGAAGATGAACAGCCTTCGCCAGGAGCTGGACTAGGCAAAGGCCGCAGCCGAAACCACGGCGAAAGAGTCTGCCCGCTCCGTTGCTGGGATTACAGATTCGGCCAAGTCGGCCAGCTATACTCTCCGGCTTGCCCTTCATGAGTTGGGCGCCCAGGCCAAAGGCGTTCCAGGCAAAAATGCTTCCGCGCTGGACTTCTCGGAATGGACACAACAAGCCGGAGGTGCCGTGGCTGAGACCGGCAGCAATTATGGTGATTGTTGTGCTCGGGTTTCGGCGGCTTTCGTGCTTGGGGTGCTCCAGGAAAATGGGTGCGAACATGTCGCCCAATTCCCGGAGTTTCGTCAAGGGAGATTGGCCGGAGAAGTCGTACCCCATCTCTACTACTCTTCGCGCTTGGCGAAAAGAGTACTGGCAGAAGGAGGGGTGAACCATCGCTAAGGGCTATCTCCGCGACCAACTGGAGAAGAGCGCGAA]
[+] EMBL AU097430 [CTCTTCCTTCCTTCTCAGCTTCTCCAAGCTCGCGCGCAA NAAGCCGCCGCCGCCGCCGCCGCCGGAGAGATGGACTCCCGCGGCTTCGATTCCGAAGGCCGGGAATTCTCCAGCGCCACCGAGATGTGGGCGCACGAAATCGGCGCCGCGGCGGATNCCCCGGTCTCCGCCGCGGTAGCCGAACCCGCTCCGGCCCCCGCCGCCGGAAGCAACGGGGTCGCCGGCGAGGAGGAGGCAGGCGGCGGCGGGAAGCGGGAGGAGTAGTACNCCAAGGCAATCGCCTACTGGCAAGGCGTGGAGGCGTCGACCGAGGGTATCCTTGGAGGGTACAGATACGTGAACNACGTGGACGTCAA ]
consensusID : consensus_5856#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 611 fasta sequence
[GATTTCACTCCTGATGAAGGAAGATATGATGTAATATGGATCCAGTGGTGCATAGGGCAACTTCCTGATGATGACTTTATTTCATTTTTTAACCGTGCAAAGATTGGGCTCAAACCCAATGGATTTTTTGTACTGAAGGAGAATATTGCAAGAAACGGATTTGTTTTGGACAAGGAGGATAACAGTATCACTAGATCTGATGCGTACTTCAAGGAGCTATTTAAAAAATGTGGTTTATATATCCATAGCATTAAGGACCAGAGCGACCTTCCAAAGGAATTATTTGCTGTTAAAATGTATGCATTGGTGACTGAAAAGCCGAAAATTCAAAAAAATGGGAAGAGAAGGCGCCCTAAAAATTCACCCCGTATGATCCGCTCTTAAAATCCCCCATATTAGATGGGTTATTACACTGTCTGGCAATGTATTGCTAAATGTCTGTCTCGAATTTTGCACATTCATTTTTGTTTGGTGTACATTTCAATTTGAATAGGCACAGTTTTACTGTGGCTAAATTGATTTTTTTTCACTTGCTGCTGGATTATTGGATGCTGTTGTAACATACTACTCCCTCCATTTCAAAATGTATGATGTTGTTGATTTTTCAAAAA]
[+] EMBL AU097431 [GATTTCACTCCTGATGAAGGAAGATATGATGTAATATGGATCCAGTGGTGCATAGGGCAACTTCCTGATGATGACTTTATTTCATTTTTTAACCGTGCAAAGATTGGGCTCAAACCCAATGGATTTTTTGTACTGAAGGAGAATATTGCAAGAAACGGATTTGTTTTGGACAAGGAGGATAACAGTATCACTAGATCTGATGCGTACTTCAAGGAGCTATTTAAAAAATGTGGTTTATATATCCATAGCATTAAGGACCAGAGCGACCTTCCAAAGGAATTATTTGCTGTTAAAATGTATGCATTGGTGACTGAAAAGCCGAAAATTCAAAAAAATGGGAAGAGAAGGCGCCCTAAAAATTCACCCCGTATGATCCGCTCTTAAAATCCCCCATATTAGATGGGTTATTACACTGTCTGGCAATGTATTGCTAAATGTCTGTCTCGAATTTTGCACATTCATTTTTGTTTGGTGTACATTTCAATTTGAATAGGCACAGTTTTACTGTGGCTAAATTGATTTTTTTTCACTTGCTGCTGGATTATTGGATGCTGTTGTAACATACTACTCCCTCCATTTCAAAATGTATGATGTTGTTGATTTTTCAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5856#0 CTCTTCCTTCCTTCTCAGCTTCTCCAAGCTCGCGCGCAAGCAAGCCGCCGCCGCCGCCGC 60
consensus_5856#1 ------------------------------------------------------------
consensus_5856#0 CGCCGGAGAGATGGACTCCCGCGGCTTCGATTCCGAAGGCCGGGAATTCTCCAGCGCCAC 120
consensus_5856#1 ------------------------------------------------------------
consensus_5856#0 CGAGATGTGGGCGCACGAAATCGGCGCCGCGGCGGATGCCCCGGTCTCCGCCGCGGTAGC 180
consensus_5856#1 ------------------------------------------------------------
consensus_5856#0 CGAACCCGCTCCGGCCCCCGCCGCCGGAAGCAACGGGGTCGCCGGCGAGGAGGAGGCAGG 240
consensus_5856#1 ------------------------------------------------------------
consensus_5856#0 CGGCGGCGGGAAGCGGGAGGAGTGGTACTCCAAGGCAATCGCCTACTGGCAAGGCGTGGA 300
consensus_5856#1 ------------------------------------------------------------
consensus_5856#0 GGCGTCGACCGAGGGTGTCCTTGGAGGGTACGGATGCGTGAACGACGTGGACGTCAAGGG 360
consensus_5856#1 ------------------------------------------------------------
consensus_5856#0 CAGCGACGCGTTCCTCCGTCCTCTCCTCGCCGAGCGATTCGGCGCCGCGAGGCGCCATCT 420
consensus_5856#1 ------------------------------------------------------------
consensus_5856#0 CGTCGCCCTCGATTGTGGCTCGGGCATCGGGAGGGTTACAAAGAATTTTCTTCTTAGGCA 480
consensus_5856#1 ------------------------------------------------------------
consensus_5856#0 TTTCAACGAGGTTGATCTTGTTGAGCCAGTGTCCCATTTTCTAGAAGCGGCACAGGAAAA 540
consensus_5856#1 ------------------------------------------------------------
consensus_5856#0 TCTTACTGAATGTATGGAAGTAGGGGAAGATACACATAAGGCTGCTAATTTTTATTGTGT 600
consensus_5856#1 ------------------------------------------------------------
consensus_5856#0 ACCTCTTCAGGATTTCACTCCTGATGAAGGAAGATATGATGTAATATGGATCCAGTGGTG 660
consensus_5856#1 ----------GATTTCACTCCTGATGAAGGAAGATATGATGTAATATGGATCCAGTGGTG 50
**************************************************
consensus_5856#0 CATAGGGCAACTTCCTGATGATGACTTTATTTCATTTTTTAACCGTGCAAAGATTGGGCT 720
consensus_5856#1 CATAGGGCAACTTCCTGATGATGACTTTATTTCATTTTTTAACCGTGCAAAGATTGGGCT 110
************************************************************
consensus_5856#0 CAAACCCAATGGATTTTTTGTACTGAAGGAGAATATTGCAAGAAACGGATTTGTTTTGGA 780
consensus_5856#1 CAAACCCAATGGATTTTTTGTACTGAAGGAGAATATTGCAAGAAACGGATTTGTTTTGGA 170
************************************************************
consensus_5856#0 CAAGGAGGATAACAGTATCACTAGATCTGATGCGTACTTCAAGGAGCTATTTAAAAAATG 840
consensus_5856#1 CAAGGAGGATAACAGTATCACTAGATCTGATGCGTACTTCAAGGAGCTATTTAAAAAATG 230
************************************************************
consensus_5856#0 TGGTTTATATATCCATAGCATTAAGGACCAGAGCGACCTTCCAAAGGAATTATTTGCTGT 900
consensus_5856#1 TGGTTTATATATCCATAGCATTAAGGACCAGAGCGACCTTCCAAAGGAATTATTTGCTGT 290
************************************************************
consensus_5856#0 TAAAATGTATGCATTGGTGACTGAAAAGCCGAAAATTCAAAAAAATGGGAAGAGAAGGCG 960
consensus_5856#1 TAAAATGTATGCATTGGTGACTGAAAAGCCGAAAATTCAAAAAAATGGGAAGAGAAGGCG 350
************************************************************
consensus_5856#0 CCCTAAAAATTCACCCCCCGTTGAGAAATCC----GTCTCCGACAACA-ATTCGTTGT-- 1013
consensus_5856#1 CCCTAAAAATTCACCCCGTATGATCCGCTCTTAAAATCCCCCATATTAGATGGGTTATTA 410
***************** * ** ** ** * * * ** *** *
consensus_5856#0 CAGTCCCTCGCTTTGTCCCGGCGGATTTCGAGACCCGCTTGGAGCTCATCC-CCTTTGTC 1072
consensus_5856#1 CACTGTCTGGCAATGTATTGCTAAATGTCT-GTCTCGAATTTTGCACATTCATTTTTGTT 469
** * ** ** *** * ** ** * * ** * ** *** * *****
consensus_5856#0 AGAGGGGTGAGTCAACTTGTTTCGCCGGCTAGCGGGCCTAGCCCATTTACCG-AGCTAAA 1131
consensus_5856#1 TGGTGTACATTTCAATTTG-----------AATAGGCACAGT---TTTACTGTGGCTAAA 515
* * **** *** * *** ** ***** * ******
consensus_5856#0 CGAGTTTGATGAGGGATGCACAGCGGTTACTCGTTCGGGCACTTTTAGCCCACTGCAACA 1191
consensus_5856#1 TTGATTTTTTTTCACTTGCTGCTGGATTATTGGAT---GCTGTTGTAACATACTACTCCC 572
*** * *** * *** * * * ** ** ** * *** * *
consensus_5856#0 TGGAGCAGTCCGTTCGGGCCCGCCTCGACGGGTACAAGGACCGTCTACGTCGGCTCGAGG 1251
consensus_5856#1 TCCATTTCAAAATGTATGATGTTGTTGATTT-TTCAAAAA-------------------- 611
* * * * * ** * *** *
consensus_5856#0 GAGACCTTGGTCGAAAAAACCAGGAGCGAGAGGTGGTGGCCGAATCCCTAAGGCAGGCTA 1311
consensus_5856#1 ------------------------------------------------------------
consensus_5856#0 AGGCCGAAAACAAAAAACTAAAGGAGGAACTGGAGAAGGCGAAGCACCAGAACGCTACCC 1371
consensus_5856#1 ------------------------------------------------------------
consensus_5856#0 TCTTGGACTACTACAATTCGTCCGAGGGGAAGATGAACAGCCTTCGCCAGGAGCTGGACT 1431
consensus_5856#1 ------------------------------------------------------------
consensus_5856#0 AGGCAAAGGCCGCAGCCGAAACCACGGCGAAAGAGTCTGCCCGCTCCGTTGCTGGGATTA 1491
consensus_5856#1 ------------------------------------------------------------
consensus_5856#0 CAGATTCGGCCAAGTCGGCCAGCTATACTCTCCGGCTTGCCCTTCATGAGTTGGGCGCCC 1551
consensus_5856#1 ------------------------------------------------------------
consensus_5856#0 AGGCCAAAGGCGTTCCAGGCAAAAATGCTTCCGCGCTGGACTTCTCGGAATGGACACAAC 1611
consensus_5856#1 ------------------------------------------------------------
consensus_5856#0 AAGCCGGAGGTGCCGTGGCTGAGACCGGCAGCAATTATGGTGATTGTTGTGCTCGGGTTT 1671
consensus_5856#1 ------------------------------------------------------------
consensus_5856#0 CGGCGGCTTTCGTGCTTGGGGTGCTCCAGGAAAATGGGTGCGAACATGTCGCCCAATTCC 1731
consensus_5856#1 ------------------------------------------------------------
consensus_5856#0 CGGAGTTTCGTCAAGGGAGATTGGCCGGAGAAGTCGTACCCCATCTCTACTACTCTTCGC 1791
consensus_5856#1 ------------------------------------------------------------
consensus_5856#0 GCTTGGCGAAAAGAGTACTGGCAGAAGGAGGGGTGAACCATCGCTAAGGGCTATCTCCGC 1851
consensus_5856#1 ------------------------------------------------------------
consensus_5856#0 GACCAACTGGAGAAGAGCGCGAA 1874
consensus_5856#1 -----------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||