These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5977#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 606 fasta sequence [TTTTAGAGTAGTAGGGCGGCATGGCATGGATTATCACTGGAAACAGCTCTCCAAGTGCATCCTAATTAGCATTAATTTAACAGTGCTAGACAAACTTAATGCGTGCTTCATTGCTGCCTCGACTTAGTTGCATTTGGAGAGTGTAGTATCCATCATCAAATGATTAATTTGCCGTGGTTGGATCGCCCCGAAGGTGACATGTATTAAGAACAAAAGCATCGATCGAGAAGCATCGCTGTAGCCTTCATATCTTGTTCTCTTGATT-AAAAACAGCGGAGTTCGTTTGCGTATCAAGGAGAAAGATGACTTCAGACACCTCTGAATTCAGAAATAAATGCGGCCCGCGGTTGAGGGTGGGCAAGGGTCCCCTCTTACTGCTTGGGCAGATCCAATTTCATTTCATTCTGGATTATATTTTCCTTTACTGAAGATGGTACAGATCTTGCTGTCAGAGGCGGTCTATTGTAATGTGCTACACTACACACTTGCATCTTTTTTGAGGTGCCACTGAATCACTGATTGAATTGTACGTATGATCCCACTGCAGGGAAAAGAAACAGCTGCATGGGGGTTGGTGAGCATACTACTCAAACCCTTGTCTTCGCC] [+] EMBL CA760795 [TTTTAGAGTAGTAGGGCGGCATGGCATGGATTATCACTGGAAACAGCTCTCCAAGTGCATCCTAATTAGCATTAATTTAACAGTGCTAGACAAACTTAATGCGTGCTTCATTGCTGCCTCGACTTAGTTGCATTTGGAGAGTGTAGTATCCATCATCAAATGATTAATTTGCCGTGGTTGGATCGCCCCGAAGGTGACATGTATTAAGAACAAAAGCATCGATCGAGAAGCATCGCTGTAGCCTTCATATCTTGTTCTCTTGATT AAAAACAGCGGAGTTCGTTTGCGTATCAAGGAGAAAGATGACTTCAGACACCTCTGAATTCAGAAATAAATGCGGCCCGCGGTTGAGGGTGGGCAAGGGTCCCCTCTTACTGCTTGGGCAGATCCAATTTCATTTCATTCTGGATTATATTTTCCTTTACTGAAGATGGTACAGATCTTGCTGTCAGAGGCGGTCTATTGTAATGTGCTACACTACACACTTGCATCTTTTTTGAGGTGCCACTGAATCACTGATTGAATTGTACGTATGATCCCACTGCAGGGAAAAGAAACAGCTGCATGGGGGTTGGTGAGCATACTACTCAAACCCTTGTCTTCGCC] [-] EMBL AA752487 [ CTCTTGATTGAAAAACRCCGGAGTTCGTTTGCGTATCAAGGAGAAAGATGACTTCAGACACCTCTGAATTCAGAAATAAATGCGGCCCGCGGTTGAGGGTGGGCAAGGGTCCCCTCTTACTGCTTGGGCAGATCCAATTTCATTTCATctcg ] consensusID : consensus_5977#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 151 fasta sequence [TTTTTTTTTTTAGTAGGGCGGCATGGCATGGATTATCACTGGAAACAGCTCTCCAAGTGCATCCTAATTAGCATTAATTTAACAGTGCTAGACAAACTTAATGCGTGCTTCATTGCTGCCTGCAATAAGACATACTCCTTCAGTCCAGTCA] [-] EMBL CF305293 [TTTTTTTTTTTAGTAGGGCGGCATGGCATGGATTATCACTGGAAACAGCTCTCCAAGTGCATCCTAATTAGCATTAATTTAACAGTGCTAGACAAACTTAATGCGTGCTTCATTGCTGCCTGCAATAAGACATACTCCTTCAGTCCAGTCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5977#0 --TTTTAGAGTAGTAGGGCGGCATGGCATGGATTATCACTGGAAACAGCTCTCCAAGTGC 58 consensus_5977#1 TTTTTTTTTTTAGTAGGGCGGCATGGCATGGATTATCACTGGAAACAGCTCTCCAAGTGC 60 **** ************************************************** consensus_5977#0 ATCCTAATTAGCATTAATTTAACAGTGCTAGACAAACTTAATGCGTGCTTCATTGCTGCC 118 consensus_5977#1 ATCCTAATTAGCATTAATTTAACAGTGCTAGACAAACTTAATGCGTGCTTCATTGCTGCC 120 ************************************************************ consensus_5977#0 TCGACTTAGTTGCATTTGGAGAGTGTAGTATCCATCATCAAATGATTAATTTGCCGTGGT 178 consensus_5977#1 TGCAATAAGACATACTCCTTCAGTCCAGTCA----------------------------- 151 * * * ** * * *** *** consensus_5977#0 TGGATCGCCCCGAAGGTGACATGTATTAAGAACAAAAGCATCGATCGAGAAGCATCGCTG 238 consensus_5977#1 ------------------------------------------------------------ consensus_5977#0 TAGCCTTCATATCTTGTTCTCTTGATTAAAAACAGCGGAGTTCGTTTGCGTATCAAGGAG 298 consensus_5977#1 ------------------------------------------------------------ consensus_5977#0 AAAGATGACTTCAGACACCTCTGAATTCAGAAATAAATGCGGCCCGCGGTTGAGGGTGGG 358 consensus_5977#1 ------------------------------------------------------------ consensus_5977#0 CAAGGGTCCCCTCTTACTGCTTGGGCAGATCCAATTTCATTTCATTCTGGATTATATTTT 418 consensus_5977#1 ------------------------------------------------------------ consensus_5977#0 CCTTTACTGAAGATGGTACAGATCTTGCTGTCAGAGGCGGTCTATTGTAATGTGCTACAC 478 consensus_5977#1 ------------------------------------------------------------ consensus_5977#0 TACACACTTGCATCTTTTTTGAGGTGCCACTGAATCACTGATTGAATTGTACGTATGATC 538 consensus_5977#1 ------------------------------------------------------------ consensus_5977#0 CCACTGCAGGGAAAAGAAACAGCTGCATGGGGGTTGGTGAGCATACTACTCAAACCCTTG 598 consensus_5977#1 ------------------------------------------------------------ consensus_5977#0 TCTTCGCC 606 consensus_5977#1 -------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||